Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP15032
DateThu Jan 5 11:34:17 GMT 2012
Unique Job IDdfc42f2183d2aba1

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3h4rA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:exodeoxyribonuclease 8;
PDBTitle: crystal structure of e. coli rece exonuclease
Confidence and coverage
Confidence:100.0% Coverage: 25%
219 residues ( 25% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSTKPLFLLRKAKKSSGEPDVVLWASNDFESTCATLDYLIVKSGKKLSSYFKAVATNFPV
Secondary structure 
SS confidence 
Disorder  ???????
??
??
???
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  VNDLPAEGEIDFTWSERYQLSKDSMTWELKPGAAPDNAHYQGNTNVNGEDMTEIEENMLL
Secondary structure 
SS confidence 
Disorder 
?
?
?
??
???????????????????
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  PISGQELPIRWLAQHGSEKPVTHVSRDGLQALHIARAEELPAVTALAVSHKTSLLDPLEI
Secondary structure 
SS confidence 
Disorder 
?
?????
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  RELHKLVRDTDKVFPNPGNSNLGLITAFFEAYLNADYTDRGLLTKEWMKGNRVSHITRTA
Secondary structure 
SS confidence 
Disorder 
??
??
?????????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  SGANAGGGNLTDRGEGFVHDLTSLARDVATGVLARSMDLDIYNLHPAHAKRIEEIIAENK
Secondary structure 
SS confidence 
Disorder  ??????????????
?
????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  PPFSVFRDKFITMPGGLDYSRAIVVASVKEAPIGIEVIPAHVTEYLNKVLTETDHANPDP
Secondary structure 
SS confidence 
Disorder 
????
?
???????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  EIVDIACGRSSAPMPQRVTEEGKQDDEEKPQPSGTTAVEQGEAETMEPDATEHHQDTQPL
Secondary structure 
SS confidence 
Disorder 
??????????????????????????????????????????????????????????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  DAQSQVNSVDAKYQELRAELHEARKNIPSKNPVDDDKLLAASRGEFVDGISDPNDPKWVK
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  GIQTRDCVYQNQPETEKTSPDMNQPEPVVQQEPEIACNACGQTGGDNCPDCGAVMGDATY
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  QETFDEESQVEAKENDPEEMEGAEHPHNENAGSDPHRDCSDETGEVADPVIVEDIEPGIY
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????
?????????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  YGISNENYHAGPGISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLEPEE
Secondary structure 
SS confidence 
Disorder 
???????
??
??????????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  FSNRFIVAPEFNRRTNAGKEEEKAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQW
Secondary structure 
SS confidence 
Disorder 
?
????????
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  LVESAGHAESSIYWEDPETGILCRCRPDKIIPEFHWIMDVKTTADIQRFKTAYYDYRYHV
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  QDAFYSDGYEAQFGVQPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLS
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........850.........860......
Sequence  DCLNTDEWPAIKTLSLPRWAKEYAND
Secondary structure 
SS confidence 
Disorder 
?
????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3h4r chain A

3D model

Region: 612 - 864
Aligned: 219
Modelled: 228
Confidence: 100.0%
Identity: 100%
PDB header:hydrolase
Chain: A: PDB Molecule:exodeoxyribonuclease 8;
PDBTitle: crystal structure of e. coli rece exonuclease

Phyre2

PDB 3l0a chain A

3D model

Region: 602 - 849
Aligned: 217
Modelled: 228
Confidence: 100.0%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:putative exonuclease;
PDBTitle: crystal structure of putative exonuclease (rer070207002219) from2 eubacterium rectale at 2.19 a resolution

Phyre2

PDB 1w36 chain E

3D model

Region: 643 - 792
Aligned: 131
Modelled: 133
Confidence: 97.6%
Identity: 21%
PDB header:recombination
Chain: E: PDB Molecule:exodeoxyribonuclease v beta chain;
PDBTitle: recbcd:dna complex

Phyre2

PDB 1w36 chain B domain 3

3D model

Region: 741 - 792
Aligned: 52
Modelled: 52
Confidence: 96.7%
Identity: 19%
Fold: Restriction endonuclease-like
Superfamily: Restriction endonuclease-like
Family: Exodeoxyribonuclease V beta chain (RecB), C-terminal domain

Phyre2

PDB 1rho chain A

3D model

Region: 467 - 479
Aligned: 12
Modelled: 13
Confidence: 54.1%
Identity: 50%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: E set domains
Family: RhoGDI-like

Phyre2

PDB 2fhz chain B domain 1

3D model

Region: 464 - 480
Aligned: 16
Modelled: 17
Confidence: 48.6%
Identity: 56%
Fold: Colicin D/E5 nuclease domain
Superfamily: Colicin D/E5 nuclease domain
Family: Colicin E5 nuclease domain

Phyre2

PDB 2nuh chain A

3D model

Region: 695 - 780
Aligned: 73
Modelled: 86
Confidence: 37.6%
Identity: 18%
PDB header:unknown function
Chain: A: PDB Molecule:periplasmic divalent cation tolerance protein;
PDBTitle: crystal structure of cuta from the phytopathgen bacterium xylella2 fastidiosa

Phyre2

PDB 2v43 chain A

3D model

Region: 732 - 745
Aligned: 14
Modelled: 14
Confidence: 36.2%
Identity: 36%
PDB header:regulator
Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb;
PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli

Phyre2

PDB 1nza chain A

3D model

Region: 695 - 780
Aligned: 73
Modelled: 86
Confidence: 34.3%
Identity: 18%
Fold: Ferredoxin-like
Superfamily: GlnB-like
Family: Divalent ion tolerance proteins CutA (CutA1)

Phyre2

PDB 1naq chain A

3D model

Region: 695 - 780
Aligned: 73
Modelled: 86
Confidence: 33.2%
Identity: 26%
Fold: Ferredoxin-like
Superfamily: GlnB-like
Family: Divalent ion tolerance proteins CutA (CutA1)

Phyre2

PDB 2zom chain C

3D model

Region: 695 - 780
Aligned: 73
Modelled: 86
Confidence: 32.2%
Identity: 18%
PDB header:unknown function
Chain: C: PDB Molecule:protein cuta, chloroplast, putative, expressed;
PDBTitle: crystal structure of cuta1 from oryza sativa

Phyre2

PDB 3ahp chain A

3D model

Region: 695 - 780
Aligned: 73
Modelled: 86
Confidence: 31.1%
Identity: 14%
PDB header:electron transport
Chain: A: PDB Molecule:cuta1;
PDBTitle: crystal structure of stable protein, cuta1, from a psychrotrophic2 bacterium shewanella sp. sib1

Phyre2

PDB 1k8t chain A

3D model

Region: 278 - 348
Aligned: 64
Modelled: 71
Confidence: 30.7%
Identity: 16%
Fold: Adenylylcyclase toxin (the edema factor)
Superfamily: Adenylylcyclase toxin (the edema factor)
Family: Adenylylcyclase toxin (the edema factor)

Phyre2

PDB 3bb5 chain B

3D model

Region: 247 - 303
Aligned: 49
Modelled: 57
Confidence: 30.2%
Identity: 20%
PDB header:unknown function
Chain: B: PDB Molecule:stress responsive alpha-beta protein;
PDBTitle: crystal structure of a dimeric ferredoxin-like protein of unknown2 function (jann_3925) from jannaschia sp. ccs1 at 2.30 a resolution

Phyre2

PDB 2zfh chain A domain 1

3D model

Region: 695 - 780
Aligned: 73
Modelled: 86
Confidence: 29.5%
Identity: 16%
Fold: Ferredoxin-like
Superfamily: GlnB-like
Family: Divalent ion tolerance proteins CutA (CutA1)

Phyre2

PDB 1xk8 chain A

3D model

Region: 695 - 780
Aligned: 73
Modelled: 86
Confidence: 29.5%
Identity: 16%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:divalent cation tolerant protein cuta;
PDBTitle: divalent cation tolerant protein cuta from homo sapiens2 o60888

Phyre2

PDB 2zfh chain A

3D model

Region: 695 - 780
Aligned: 73
Modelled: 86
Confidence: 29.1%
Identity: 16%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cuta;
PDBTitle: crystal structure of putative cuta1 from homo sapiens at 2.05a2 resolution

Phyre2

PDB 3d0j chain A

3D model

Region: 595 - 609
Aligned: 15
Modelled: 14
Confidence: 28.5%
Identity: 27%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ca_c3497;
PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824

Phyre2

PDB 1fyb chain A

3D model

Region: 468 - 477
Aligned: 10
Modelled: 10
Confidence: 27.2%
Identity: 60%
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:proteinase inhibitor;
PDBTitle: solution structure of c1-t1, a two-domain proteinase2 inhibitor derived from the circular precursor protein na-3 propi from nicotiana alata

Phyre2

PDB 1p1l chain A

3D model

Region: 695 - 750
Aligned: 54
Modelled: 56
Confidence: 25.2%
Identity: 19%
Fold: Ferredoxin-like
Superfamily: GlnB-like
Family: Divalent ion tolerance proteins CutA (CutA1)

Phyre2
1
c3h4rA_
2
c3l0aA_
3
c1w36E_
4
d1w36b3
5
d1rhoa_
6
d2fhzb1
7
c2nuhA_
8
c2v43A_
9
d1nzaa_
10
d1naqa_
11
c2zomC_
12
c3ahpA_
13
d1k8ta_
14
c3bb5B_
15
d2zfha1
16
c1xk8A_
17
c2zfhA_
18
c3d0jA_
19
c1fybA_
20
d1p1la_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3h4rA_
100.0 100 PDB header:hydrolase
Chain: A: PDB Molecule:exodeoxyribonuclease 8;
PDBTitle: crystal structure of e. coli rece exonuclease
2c3l0aA_
100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:putative exonuclease;
PDBTitle: crystal structure of putative exonuclease (rer070207002219) from2 eubacterium rectale at 2.19 a resolution
3c1w36E_
97.6 21 PDB header:recombination
Chain: E: PDB Molecule:exodeoxyribonuclease v beta chain;
PDBTitle: recbcd:dna complex
4d1w36b3
96.7 19 Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Exodeoxyribonuclease V beta chain (RecB), C-terminal domain
5d1rhoa_
54.1 50 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
6d2fhzb1
48.6 56 Fold:Colicin D/E5 nuclease domain
Superfamily:Colicin D/E5 nuclease domain
Family:Colicin E5 nuclease domain
7c2nuhA_
37.6 18 PDB header:unknown function
Chain: A: PDB Molecule:periplasmic divalent cation tolerance protein;
PDBTitle: crystal structure of cuta from the phytopathgen bacterium xylella2 fastidiosa
8c2v43A_
36.2 36 PDB header:regulator
Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb;
PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli
9d1nzaa_
34.3 18 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
10d1naqa_
33.2 26 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
11c2zomC_
32.2 18 PDB header:unknown function
Chain: C: PDB Molecule:protein cuta, chloroplast, putative, expressed;
PDBTitle: crystal structure of cuta1 from oryza sativa
12c3ahpA_
31.1 14 PDB header:electron transport
Chain: A: PDB Molecule:cuta1;
PDBTitle: crystal structure of stable protein, cuta1, from a psychrotrophic2 bacterium shewanella sp. sib1
13d1k8ta_
30.7 16 Fold:Adenylylcyclase toxin (the edema factor)
Superfamily:Adenylylcyclase toxin (the edema factor)
Family:Adenylylcyclase toxin (the edema factor)
14c3bb5B_
30.2 20 PDB header:unknown function
Chain: B: PDB Molecule:stress responsive alpha-beta protein;
PDBTitle: crystal structure of a dimeric ferredoxin-like protein of unknown2 function (jann_3925) from jannaschia sp. ccs1 at 2.30 a resolution
15d2zfha1
29.5 16 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
16c1xk8A_
29.5 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:divalent cation tolerant protein cuta;
PDBTitle: divalent cation tolerant protein cuta from homo sapiens2 o60888
17c2zfhA_
29.1 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cuta;
PDBTitle: crystal structure of putative cuta1 from homo sapiens at 2.05a2 resolution
18c3d0jA_
28.5 27 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ca_c3497;
PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824
19c1fybA_
27.2 60 PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:proteinase inhibitor;
PDBTitle: solution structure of c1-t1, a two-domain proteinase2 inhibitor derived from the circular precursor protein na-3 propi from nicotiana alata
20d1p1la_
25.2 19 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
21d1vhfa_
not modelled 22.6 17 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
22d1osce_
not modelled 21.9 15 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
23d1ukua_
not modelled 20.5 17 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
24d1kr4a_
not modelled 19.7 17 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Divalent ion tolerance proteins CutA (CutA1)
25d3bgea1
not modelled 18.7 18 Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
26d3ctda1
not modelled 18.2 21 Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
27d1ajwa_
not modelled 18.2 40 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
28c3et6A_
not modelled 15.0 13 PDB header:lyase
Chain: A: PDB Molecule:soluble guanylyl cyclase beta;
PDBTitle: the crystal structure of the catalytic domain of a eukaryotic2 guanylate cyclase
29d1gpja1
not modelled 15.0 14 Fold:Glutamyl tRNA-reductase dimerization domain
Superfamily:Glutamyl tRNA-reductase dimerization domain
Family:Glutamyl tRNA-reductase dimerization domain
30c3nj2B_
not modelled 14.9 27 PDB header:unknown function
Chain: B: PDB Molecule:duf269-containing protein;
PDBTitle: crystal structure of cce_0566 from the cyanobacterium cyanothece2 51142, a protein associated with nitrogen fixation from the duf2693 family
31c3iyuY_
not modelled 14.4 14 PDB header:virus
Chain: Y: PDB Molecule:outer capsid protein vp4;
PDBTitle: atomic model of an infectious rotavirus particle
32c3g43F_
not modelled 13.6 30 PDB header:metal binding protein
Chain: F: PDB Molecule:voltage-dependent l-type calcium channel subunit
PDBTitle: crystal structure of the calmodulin-bound cav1.2 c-terminal2 regulatory domain dimer
33c3kolA_
not modelled 13.2 44 PDB header:metal binding protein
Chain: A: PDB Molecule:glyoxalase/bleomycin resistance
PDBTitle: crystal structure of a glyoxalase/dioxygenase from nostoc2 punctiforme
34d1pjua1
not modelled 12.9 50 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
35c1h4tD_
not modelled 12.6 24 PDB header:aminoacyl-trna synthetase
Chain: D: PDB Molecule:prolyl-trna synthetase;
PDBTitle: prolyl-trna synthetase from thermus thermophilus complexed2 with l-proline
36c1wq6A_
not modelled 12.5 29 PDB header:oncoprotein
Chain: A: PDB Molecule:aml1-eto;
PDBTitle: the tetramer structure of the nervy homolgy two (nhr2) domain of aml1-2 eto is critical for aml1-eto's activity
37c2o61A_
not modelled 12.3 32 PDB header:transcription/dna
Chain: A: PDB Molecule:transcription factor p65/interferon regulatory factor
PDBTitle: crystal structure of nfkb, irf7, irf3 bound to the interferon-b2 enhancer
38c2q2kA_
not modelled 12.0 9 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
39d4sgbi_
not modelled 11.8 60 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
40d1nr3a_
not modelled 11.3 5 Fold:DNA-binding protein Tfx
Superfamily:DNA-binding protein Tfx
Family:DNA-binding protein Tfx
41c3mcrA_
not modelled 11.1 32 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh dehydrogenase, subunit c;
PDBTitle: crystal structure of nadh dehydrogenase subunit c (tfu_2693) from2 thermobifida fusca yx-er1 at 2.65 a resolution
42c2qycA_
not modelled 10.8 24 PDB header:unknown function
Chain: A: PDB Molecule:ferredoxin-like protein;
PDBTitle: crystal structure of a dimeric ferredoxin-like protein (bb1511) from2 bordetella bronchiseptica rb50 at 1.90 a resolution
43d1oyvi_
not modelled 10.7 50 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
44c2l1nA_
not modelled 10.7 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of the protein yp_399305.1
45c3bn7A_
not modelled 10.7 16 PDB header:unknown function
Chain: A: PDB Molecule:ferredoxin-like protein;
PDBTitle: crystal structure of a dimeric ferredoxin-like protein (cc_2267) from2 caulobacter crescentus cb15 at 1.64 a resolution
46d1k3ka_
not modelled 10.5 16 Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
47c2khrA_
not modelled 10.3 67 PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein mbth;
PDBTitle: solution structure of rv2377c, a mbth-like protein from mycobacterium2 tuberculosis
48c2xgfA_
not modelled 9.9 26 PDB header:viral protein
Chain: A: PDB Molecule:long tail fiber protein p37;
PDBTitle: structure of the bacteriophage t4 long tail fibre needle-2 shaped receptor-binding tip
49c3nsjA_
not modelled 9.3 19 PDB header:immune system
Chain: A: PDB Molecule:perforin-1;
PDBTitle: the x-ray crystal structure of lymphocyte perforin
50c1w36F_
not modelled 9.1 12 PDB header:recombination
Chain: F: PDB Molecule:exodeoxyribonuclease v gamma chain;
PDBTitle: recbcd:dna complex
51d1azsb_
not modelled 8.8 14 Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
52c2oevA_
not modelled 8.3 15 PDB header:protein transport
Chain: A: PDB Molecule:programmed cell death 6-interacting protein;
PDBTitle: crystal structure of alix/aip1
53d1leha2
not modelled 8.3 20 Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
54d2f23a1
not modelled 8.2 22 Fold:Long alpha-hairpin
Superfamily:GreA transcript cleavage protein, N-terminal domain
Family:GreA transcript cleavage protein, N-terminal domain
55c2rmsB_
not modelled 8.2 32 PDB header:transcription
Chain: B: PDB Molecule:msin3a-binding protein;
PDBTitle: solution structure of the msin3a pah1-sap25 sid complex
56c2bf9A_
not modelled 7.9 17 PDB header:hormone
Chain: A: PDB Molecule:pancreatic hormone;
PDBTitle: anisotropic refinement of avian (turkey) pancreatic2 polypeptide at 0.99 angstroms resolution.
57d1fyba1
not modelled 7.7 60 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
58d2ftxa1
not modelled 7.5 53 Fold:Kinetochore globular domain-like
Superfamily:Kinetochore globular domain
Family:Spc25-like
59c2hr5B_
not modelled 7.3 20 PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
60c3ctdB_
not modelled 7.2 21 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative atpase, aaa family;
PDBTitle: crystal structure of a putative aaa family atpase from2 prochlorococcus marinus subsp. pastoris
61d1g7oa1
not modelled 7.1 21 Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
62c1tz5A_
not modelled 7.1 17 PDB header:hormone/growth factor
Chain: A: PDB Molecule:chimera of pancreatic hormone and neuropeptide y;
PDBTitle: [pnpy19-23]-hpp bound to dpc micelles
63d1tzfa_
not modelled 7.0 14 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Cytidylytransferase
64c3u7vA_
not modelled 7.0 36 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: the structure of a putative beta-galactosidase from caulobacter2 crescentus cb15.
65c2xnsC_
not modelled 6.8 71 PDB header:hydrolase/peptide
Chain: C: PDB Molecule:regulator of g-protein signaling 14;
PDBTitle: crystal structure of human g alpha i1 bound to a designed helical2 peptide derived from the goloco motif of rgs14
66c1hk8A_
not modelled 6.6 44 PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp
67d1hk8a_
not modelled 6.6 44 Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:Class III anaerobic ribonucleotide reductase NRDD subunit
68d1xpma2
not modelled 6.5 14 Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
69d3erja1
not modelled 6.5 22 Fold:Peptidyl-tRNA hydrolase II
Superfamily:Peptidyl-tRNA hydrolase II
Family:Peptidyl-tRNA hydrolase II
70c2hfvA_
not modelled 6.3 33 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rpa1041;
PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90.
71c3f4yF_
not modelled 6.3 26 PDB header:viral protein
Chain: F: PDB Molecule:mutant peptide derived from hiv gp41 chr domain;
PDBTitle: hiv gp41 six-helix bundle containing a mutant chr alpha-2 peptide sequence
72d1f06a2
not modelled 6.2 23 Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
73d1m8aa_
not modelled 6.1 45 Fold:IL8-like
Superfamily:Interleukin 8-like chemokines
Family:Interleukin 8-like chemokines
74c2rbcA_
not modelled 6.1 8 PDB header:transferase
Chain: A: PDB Molecule:sugar kinase;
PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens
75d1tiha_
not modelled 6.1 60 Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
76c1xtyD_
not modelled 6.0 18 PDB header:hydrolase
Chain: D: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of sulfolobus solfataricus peptidyl-trna2 hydrolase
77d1q7sa_
not modelled 5.9 20 Fold:Peptidyl-tRNA hydrolase II
Superfamily:Peptidyl-tRNA hydrolase II
Family:Peptidyl-tRNA hydrolase II
78d1dl6a_
not modelled 5.9 29 Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
79c3g7pA_
not modelled 5.9 21 PDB header:unknown function
Chain: A: PDB Molecule:nitrogen fixation protein;
PDBTitle: crystal structure of a nifx-associated protein of unknown function2 (afe_1514) from acidithiobacillus ferrooxidans atcc at 2.00 a3 resolution
80c2wx6B_
not modelled 5.8 44 PDB header:oxidoreductase
Chain: B: PDB Molecule:peroxidase ycdb;
PDBTitle: x-ray crystallographic structure of e. coli apo-efeb
81c2dezA_
not modelled 5.8 31 PDB header:neuropeptide
Chain: A: PDB Molecule:peptide yy;
PDBTitle: structure of human pyy
82c3be3A_
not modelled 5.8 50 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein belonging to pfam duf16532 from bordetella bronchiseptica
83c1ronA_
not modelled 5.7 13 PDB header:neuropeptide
Chain: A: PDB Molecule:neuropeptide y;
PDBTitle: nmr solution structure of human neuropeptide y
84d2gvka1
not modelled 5.7 50 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Dyp-type peroxidase-like
85d1rlka_
not modelled 5.6 12 Fold:Peptidyl-tRNA hydrolase II
Superfamily:Peptidyl-tRNA hydrolase II
Family:Peptidyl-tRNA hydrolase II
86c2yy8B_
not modelled 5.6 29 PDB header:transferase
Chain: B: PDB Molecule:upf0106 protein ph0461;
PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine
87d1q4ra_
not modelled 5.5 19 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Plant stress-induced protein
88d2o3aa1
not modelled 5.5 29 Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF0751-like
89d2i2la1
not modelled 5.4 24 Fold:YopX-like
Superfamily:YopX-like
Family:YopX-like
90d1nrja_
not modelled 5.4 41 Fold:Profilin-like
Superfamily:SNARE-like
Family:SRP alpha N-terminal domain-like
91c3c18B_
not modelled 5.4 9 PDB header:transferase
Chain: B: PDB Molecule:nucleotidyltransferase-like protein;
PDBTitle: crystal structure of nucleotidyltransferase-like protein2 (zp_00538802.1) from exiguobacterium sibiricum 255-15 at 1.90 a3 resolution
92c1jsuC_
not modelled 5.4 35 PDB header:complex (transferase/cyclin/inhibitor)
Chain: C: PDB Molecule:p27;
PDBTitle: p27(kip1)/cyclin a/cdk2 complex
93c2om2B_
not modelled 5.4 86 PDB header:signaling protein
Chain: B: PDB Molecule:regulator of g-protein signalling 14 goloco
PDBTitle: crystal structure of human g[alpha]i1 bound to the goloco2 motif of rgs14
94d1wz3a1
not modelled 5.4 18 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:APG12-like
95d2o8sa1
not modelled 5.3 21 Fold:AGR C 984p-like
Superfamily:AGR C 984p-like
Family:AGR C 984p-like
96c2rp4C_
not modelled 5.3 24 PDB header:transcription
Chain: C: PDB Molecule:transcription factor p53;
PDBTitle: solution structure of the oligomerization domain in dmp53
97c2d3kA_
not modelled 5.3 24 PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: structural study on project id ph1539 from pyrococcus2 horikoshii ot3
98d1tr0a_
not modelled 5.3 19 Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Plant stress-induced protein
99c2l4nA_
not modelled 5.2 36 PDB header:cytokine
Chain: A: PDB Molecule:c-c motif chemokine 21;
PDBTitle: solution structure of the chemokine ccl21

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0