Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0ABR7
DateThu Jan 5 11:16:09 GMT 2012
Unique Job IDdef27a0b7e02e877

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3n0qA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative aromatic-ring hydroxylating dioxygenase;
PDBTitle: crystal structure of a putative aromatic-ring hydroxylating2 dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a3 resolution
Confidence and coverage
Confidence:100.0% Coverage: 93%
348 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSNLSPDFVLPENFCANPQEAWTIPARFYTDQNAFEHEKENVFAKSWICVAHSSELANAN
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Disorder  ??????????????
??????






































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   .........70.........80.........90.........100.........110.........120
Sequence  DYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSGEGKAKNVITCPYHAWAFKLDG
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?

















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   .........130.........140.........150.........160.........170.........180
Sequence  NLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFINMDPNATSVEDQLPGLGAKVLEACP
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?
















































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   .........190.........200.........210.........220.........230.........240
Sequence  EVHDLKLAARFTTRTPANWKNIVDNYLECYHCGPAHPGFSDSVQVDRYWHTMHGNWTLQY
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   .........250.........260.........270.........280.........290.........300
Sequence  GFAKPSEQSFKFEEGTDAAFHGFWLWPCTMLNVTPIKGMMTVIYEFPVDSETTLQNYDIY
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Disorder 

??????



















































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   .........310.........320.........330.........340.........350.........360
Sequence  FTNEELTDEQKSLIEWYRDVFRPEDLRLVESVQKGLKSRGYRGQGRIMADSSGSGISEHG
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?????
?






??????



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   .........370....
Sequence  IAHFHNLLAQVFKD
Secondary structure 

SS confidence 













Disorder 











??
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3n0q chain A

3D model

Region: 13 - 373
Aligned: 348
Modelled: 361
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative aromatic-ring hydroxylating dioxygenase;
PDBTitle: crystal structure of a putative aromatic-ring hydroxylating2 dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a3 resolution

Phyre2

PDB 1ulj chain A

3D model

Region: 19 - 373
Aligned: 351
Modelled: 355
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: A: PDB Molecule:biphenyl dioxygenase large subunit;
PDBTitle: biphenyl dioxygenase (bpha1a2) in complex with the substrate

Phyre2

PDB 2b1x chain E

3D model

Region: 20 - 373
Aligned: 354
Modelled: 354
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: E: PDB Molecule:naphthalene dioxygenase large subunit;
PDBTitle: crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp.

Phyre2

PDB 1wql chain A

3D model

Region: 20 - 373
Aligned: 350
Modelled: 354
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-sulfur protein large subunit of cumene dioxygenase;
PDBTitle: cumene dioxygenase (cuma1a2) from pseudomonas fluorescens ip01

Phyre2

PDB 2hmn chain A

3D model

Region: 19 - 373
Aligned: 351
Modelled: 355
Confidence: 100.0%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase alpha subunit;
PDBTitle: crystal structure of the naphthalene 1,2-dioxygenase f352v2 mutant bound to anthracene.

Phyre2

PDB 2gbx chain E

3D model

Region: 20 - 373
Aligned: 350
Modelled: 354
Confidence: 100.0%
Identity: 21%
PDB header:oxidoreductase
Chain: E: PDB Molecule:biphenyl 2,3-dioxygenase alpha subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl

Phyre2

PDB 3gte chain B

3D model

Region: 41 - 373
Aligned: 314
Modelled: 333
Confidence: 100.0%
Identity: 18%
PDB header:electron transport, oxidoreductase
Chain: B: PDB Molecule:ddmc;
PDBTitle: crystal structure of dicamba monooxygenase with non-heme2 iron

Phyre2

PDB 3gkq chain B

3D model

Region: 37 - 374
Aligned: 319
Modelled: 338
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 novosphingobium sp. ka1

Phyre2

PDB 2zyl chain A

3D model

Region: 42 - 374
Aligned: 307
Modelled: 319
Confidence: 100.0%
Identity: 13%
PDB header:oxidoreductase
Chain: A: PDB Molecule:possible oxidoreductase;
PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis

Phyre2

PDB 2de7 chain B

3D model

Region: 38 - 373
Aligned: 316
Modelled: 336
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase

Phyre2

PDB 3gcf chain C

3D model

Region: 37 - 373
Aligned: 318
Modelled: 336
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: C: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 nocardioides aromaticivorans ic177

Phyre2

PDB 1z01 chain D

3D model

Region: 31 - 373
Aligned: 331
Modelled: 343
Confidence: 100.0%
Identity: 16%
PDB header:oxidoreductase
Chain: D: PDB Molecule:2-oxo-1,2-dihydroquinoline 8-monooxygenase,
PDBTitle: 2-oxoquinoline 8-monooxygenase component: active site2 modulation by rieske-[2fe-2s] center oxidation/reduction

Phyre2

PDB 2b1x chain A domain 1

3D model

Region: 18 - 160
Aligned: 143
Modelled: 143
Confidence: 100.0%
Identity: 30%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2

PDB 1wql chain A domain 1

3D model

Region: 3 - 160
Aligned: 152
Modelled: 158
Confidence: 100.0%
Identity: 30%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2

PDB 1uli chain A domain 1

3D model

Region: 19 - 160
Aligned: 142
Modelled: 142
Confidence: 100.0%
Identity: 29%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2

PDB 2bmo chain A domain 1

3D model

Region: 15 - 159
Aligned: 145
Modelled: 145
Confidence: 100.0%
Identity: 27%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2

PDB 1o7n chain A domain 1

3D model

Region: 12 - 159
Aligned: 148
Modelled: 148
Confidence: 100.0%
Identity: 28%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2

PDB 1z01 chain A domain 1

3D model

Region: 31 - 166
Aligned: 132
Modelled: 136
Confidence: 100.0%
Identity: 24%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2

PDB 2de6 chain A domain 1

3D model

Region: 28 - 162
Aligned: 131
Modelled: 134
Confidence: 100.0%
Identity: 28%
Fold: ISP domain
Superfamily: ISP domain
Family: Ring hydroxylating alpha subunit ISP domain

Phyre2

PDB 3d89 chain A

3D model

Region: 46 - 168
Aligned: 120
Modelled: 123
Confidence: 99.9%
Identity: 16%
PDB header:electron transport
Chain: A: PDB Molecule:rieske domain-containing protein;
PDBTitle: crystal structure of a soluble rieske ferredoxin from mus musculus

Phyre2
1

c3n0qA_
2

c1uljA_
3

c2b1xE_
4

c1wqlA_
5

c2hmnA_
6

c2gbxE_
7

c3gteB_
8

c3gkqB_
9

c2zylA_
10

c2de7B_
11

c3gcfC_
12

c1z01D_
13

d2b1xa1
14

d1wqla1
15

d1ulia1
16

d2bmoa1
17

d1o7na1
18

d1z01a1
19

d2de6a1
20

c3d89A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3n0qA_



100.0 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative aromatic-ring hydroxylating dioxygenase;
PDBTitle: crystal structure of a putative aromatic-ring hydroxylating2 dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a3 resolution
2c1uljA_



100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:biphenyl dioxygenase large subunit;
PDBTitle: biphenyl dioxygenase (bpha1a2) in complex with the substrate
3c2b1xE_



100.0 23 PDB header:oxidoreductase
Chain: E: PDB Molecule:naphthalene dioxygenase large subunit;
PDBTitle: crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp.
4c1wqlA_



100.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-sulfur protein large subunit of cumene dioxygenase;
PDBTitle: cumene dioxygenase (cuma1a2) from pseudomonas fluorescens ip01
5c2hmnA_



100.0 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase alpha subunit;
PDBTitle: crystal structure of the naphthalene 1,2-dioxygenase f352v2 mutant bound to anthracene.
6c2gbxE_



100.0 21 PDB header:oxidoreductase
Chain: E: PDB Molecule:biphenyl 2,3-dioxygenase alpha subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
7c3gteB_



100.0 18 PDB header:electron transport, oxidoreductase
Chain: B: PDB Molecule:ddmc;
PDBTitle: crystal structure of dicamba monooxygenase with non-heme2 iron
8c3gkqB_



100.0 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 novosphingobium sp. ka1
9c2zylA_



100.0 13 PDB header:oxidoreductase
Chain: A: PDB Molecule:possible oxidoreductase;
PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis
10c2de7B_



100.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase
11c3gcfC_



100.0 16 PDB header:oxidoreductase
Chain: C: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 nocardioides aromaticivorans ic177
12c1z01D_



100.0 16 PDB header:oxidoreductase
Chain: D: PDB Molecule:2-oxo-1,2-dihydroquinoline 8-monooxygenase,
PDBTitle: 2-oxoquinoline 8-monooxygenase component: active site2 modulation by rieske-[2fe-2s] center oxidation/reduction
13d2b1xa1



100.0 30 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
14d1wqla1



100.0 30 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
15d1ulia1



100.0 29 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
16d2bmoa1



100.0 27 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
17d1o7na1



100.0 28 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
18d1z01a1



100.0 24 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
19d2de6a1



100.0 28 Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
20c3d89A_



99.9 16 PDB header:electron transport
Chain: A: PDB Molecule:rieske domain-containing protein;
PDBTitle: crystal structure of a soluble rieske ferredoxin from mus musculus
21d1vm9a_



not modelled 99.9 21 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
22d1fqta_



not modelled 99.9 17 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
23d3c0da1



not modelled 99.9 19 Fold:ISP domain
Superfamily:ISP domain
Family:NirD-like
24c2de7E_



not modelled 99.9 23 PDB header:oxidoreductase
Chain: E: PDB Molecule:ferredoxin component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase
25c3dqyA_



not modelled 99.9 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin
PDBTitle: crystal structure of toluene 2,3-dioxygenase ferredoxin
26c3gceA_



not modelled 99.9 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin component of carbazole 1,9a-
PDBTitle: ferredoxin of carbazole 1,9a-dioxygenase from nocardioides2 aromaticivorans ic177
27d2jzaa1



not modelled 99.8 19 Fold:ISP domain
Superfamily:ISP domain
Family:NirD-like
28c2qpzA_



not modelled 99.8 21 PDB header:metal binding protein
Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase system ferredoxin
PDBTitle: naphthalene 1,2-dioxygenase rieske ferredoxin
29d2jo6a1



not modelled 99.8 17 Fold:ISP domain
Superfamily:ISP domain
Family:NirD-like
30c2i7fB_



not modelled 99.8 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin component of dioxygenase;
PDBTitle: sphingomonas yanoikuyae b1 ferredoxin
31d2bmoa2



not modelled 99.8 20 Fold:TBP-like
Superfamily:Bet v1-like
Family:Ring hydroxylating alpha subunit catalytic domain
32d2b1xa2



not modelled 99.8 16 Fold:TBP-like
Superfamily:Bet v1-like
Family:Ring hydroxylating alpha subunit catalytic domain
33d1ulia2



not modelled 99.8 12 Fold:TBP-like
Superfamily:Bet v1-like
Family:Ring hydroxylating alpha subunit catalytic domain
34d1wqla2



not modelled 99.8 17 Fold:TBP-like
Superfamily:Bet v1-like
Family:Ring hydroxylating alpha subunit catalytic domain
35d1o7na2



not modelled 99.8 21 Fold:TBP-like
Superfamily:Bet v1-like
Family:Ring hydroxylating alpha subunit catalytic domain
36d1rfsa_



not modelled 99.6 22 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
37d1q90c_



not modelled 99.6 20 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
38d3cx5e1



not modelled 99.5 18 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
39d1g8kb_



not modelled 99.5 28 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
40d2e74d1



not modelled 99.5 21 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
41d1riea_



not modelled 99.4 18 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
42c2nvgA_



not modelled 99.3 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: soluble domain of rieske iron sulfur protein.
43d1nyka_



not modelled 99.3 15 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
44c2e76D_



not modelled 99.2 19 PDB header:photosynthesis
Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
45d1z01a2



not modelled 99.1 10 Fold:TBP-like
Superfamily:Bet v1-like
Family:Ring hydroxylating alpha subunit catalytic domain
46c2fyuE_



not modelled 99.1 20 PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
47c2fynO_



not modelled 99.0 21 PDB header:oxidoreductase
Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
48d2de6a2



not modelled 98.9 15 Fold:TBP-like
Superfamily:Bet v1-like
Family:Ring hydroxylating alpha subunit catalytic domain
49c1p84E_



not modelled 98.8 18 PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
50d1jm1a_



not modelled 97.9 35 Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
51d1pwka_



not modelled 40.6 13 Fold:DLC
Superfamily:DLC
Family:DLC
52c2c3yA_



not modelled 25.8 9 PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase;
PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus
53c2z0rA_



not modelled 24.9 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ttha0547;
PDBTitle: crystal structure of hypothetical protein ttha0547
54c2ba1B_



not modelled 23.9 13 PDB header:rna binding protein
Chain: B: PDB Molecule:archaeal exosome rna binding protein csl4;
PDBTitle: archaeal exosome core
55d1w44a_



not modelled 22.9 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
56c2w3nA_



not modelled 22.2 26 PDB header:lyase
Chain: A: PDB Molecule:carbonic anhydrase 2;
PDBTitle: structure and inhibition of the co2-sensing carbonic2 anhydrase can2 from the pathogenic fungus cryptococcus3 neoformans
57c3kv0A_



not modelled 22.0 40 PDB header:transport protein
Chain: A: PDB Molecule:het-c2;
PDBTitle: crystal structure of het-c2: a fungal glycolipid transfer protein2 (gltp)
58c1ddzA_



not modelled 21.3 21 PDB header:lyase
Chain: A: PDB Molecule:carbonic anhydrase;
PDBTitle: x-ray structure of a beta-carbonic anhydrase from the red2 alga, porphyridium purpureum r-1
59d2c42a2



not modelled 21.0 9 Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:PFOR PP module
60d1swxa_



not modelled 20.4 60 Fold:Glycolipid transfer protein, GLTP
Superfamily:Glycolipid transfer protein, GLTP
Family:Glycolipid transfer protein, GLTP
61c2i3fA_



not modelled 19.6 40 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:glycolipid transfer-like protein;
PDBTitle: crystal structure of a glycolipid transfer-like protein2 from galdieria sulphuraria
62d1cmia_



not modelled 19.1 13 Fold:DLC
Superfamily:DLC
Family:DLC
63c1dfcB_



not modelled 18.5 18 PDB header:structural protein
Chain: B: PDB Molecule:fascin;
PDBTitle: crystal structure of human fascin, an actin-crosslinking protein
64d1ddza2



not modelled 17.7 25 Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
65c3k2tA_



not modelled 17.4 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lmo2511 protein;
PDBTitle: crystal structure of lmo2511 protein from listeria2 monocytogenes, northeast structural genomics consortium3 target lkr84a
66d1t62a_



not modelled 17.3 15 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:Hypothetical protein EF3133
67d1ubdc1



not modelled 17.1 67 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
68d1igqa_



not modelled 16.8 14 Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:Transcriptional repressor protein KorB
69c3s9xA_



not modelled 16.6 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:asch domain;
PDBTitle: high resolution crystal structure of asch domain from lactobacillus2 crispatus jv v101
70c3izbP_



not modelled 16.6 40 PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein rps11 (s17p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
71d1uhva1



not modelled 16.1 18 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
72c3iz6P_



not modelled 16.1 40 PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s11 (s17p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
73c3nwiC_



not modelled 16.0 12 PDB header:transport protein
Chain: C: PDB Molecule:zinc transport protein zntb;
PDBTitle: the soluble domain structure of the zntb zn2+ efflux system
74d1igub_



not modelled 15.1 14 Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:Transcriptional repressor protein KorB
75d1d1la_



not modelled 14.9 29 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
76c3lasA_



not modelled 14.6 7 PDB header:lyase
Chain: A: PDB Molecule:putative carbonic anhydrase;
PDBTitle: crystal structure of carbonic anhydrase from streptococcus mutans to2 1.4 angstrom resolution
77c2xznQ_



not modelled 14.5 40 PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein s17 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
78c3ka5A_



not modelled 14.4 14 PDB header:chaperone
Chain: A: PDB Molecule:ribosome-associated protein y (psrp-1);
PDBTitle: crystal structure of ribosome-associated protein y (psrp-1)2 from clostridium acetobutylicum. northeast structural3 genomics consortium target id car123a
79c3fcgB_



not modelled 14.4 11 PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher
80d4croa_



not modelled 14.2 29 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
81d3orca_



not modelled 14.2 29 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
82d1nfga1



not modelled 14.1 22 Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:Hydantoinase (dihydropyrimidinase)
83c2yrtA_



not modelled 14.1 25 PDB header:transcription
Chain: A: PDB Molecule:chord containing protein-1;
PDBTitle: solution structure of the chord domain of human chord-2 containing protein 1
84c2kppA_



not modelled 13.6 19 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0431 protein;
PDBTitle: solution nmr structure of lin0431 protein from listeria innocua.2 northeast structural genomics consortium target lkr112
85c2jv2A_



not modelled 13.6 18 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ph1500;
PDBTitle: solution structure of the n-terminal domain of ph1500
86c2pijB_



not modelled 13.4 29 PDB header:transcription
Chain: B: PDB Molecule:prophage pfl 6 cro;
PDBTitle: structure of the cro protein from prophage pfl 6 in pseudomonas2 fluorescens pf-5
87c3ozbF_



not modelled 13.3 19 PDB header:transferase
Chain: F: PDB Molecule:methylthioadenosine phosphorylase;
PDBTitle: crystal structure of 5'-methylthioinosine phosphorylase from2 psedomonas aeruginosa in complex with hypoxanthine
88d1ddza1



not modelled 13.0 21 Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
89d1wida_



not modelled 12.7 21 Fold:DNA-binding pseudobarrel domain
Superfamily:DNA-binding pseudobarrel domain
Family:B3 DNA binding domain
90d1ugpa_



not modelled 12.6 10 Fold:Nitrile hydratase alpha chain
Superfamily:Nitrile hydratase alpha chain
Family:Nitrile hydratase alpha chain
91c1ylkA_



not modelled 12.5 21 PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein rv1284/mt1322;
PDBTitle: crystal structure of rv1284 from mycobacterium tuberculosis in complex2 with thiocyanate
92c2a8cE_



not modelled 12.1 36 PDB header:lyase
Chain: E: PDB Molecule:carbonic anhydrase 2;
PDBTitle: haemophilus influenzae beta-carbonic anhydrase
93d1v29a_



not modelled 12.0 14 Fold:Nitrile hydratase alpha chain
Superfamily:Nitrile hydratase alpha chain
Family:Nitrile hydratase alpha chain
94d3e2ba1



not modelled 11.8 11 Fold:DLC
Superfamily:DLC
Family:DLC
95d1ei5a2



not modelled 11.6 15 Fold:Streptavidin-like
Superfamily:D-aminopeptidase, middle and C-terminal domains
Family:D-aminopeptidase, middle and C-terminal domains
96d1en2a2



not modelled 11.2 19 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Plant lectins/antimicrobial peptides
Family:Hevein-like agglutinin (lectin) domain
97c2fhdA_



not modelled 11.2 5 PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9/crb2;
PDBTitle: crystal structure of crb2 tandem tudor domains
98d1do5a_



not modelled 11.1 29 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cu,Zn superoxide dismutase-like
Family:Cu,Zn superoxide dismutase-like
99d1ehda2



not modelled 10.7 19 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Plant lectins/antimicrobial peptides
Family:Hevein-like agglutinin (lectin) domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0