Secondary structure and disorder prediction

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Sequence		M	Q	N	T	T	H	D	N	V	I	L	E	L	T	V	R	N	H	P	G	V	M	T	H	V	C	G	L	F	A	R	R	A	F	N	V	E	G	I	L	C	L	P	I	Q	D	S	D	K	S	H	I	W	L	L	V	N	D	D	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Sequence		R	L	E	Q	M	I	S	Q	I	D	K	L	E	D	V	V	K	V	Q	R	N	Q	S	D	P	T	M	F	N	K	I	A	V	F	F	Q
Secondary structure
SS confidence
Disorder																																		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2pc6 chain C Region: 6 - 94 Aligned: 89 Modelled: 86 Confidence: 100.0% Identity: 29% PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea Phyre2 PDB 2fgc chain A Region: 6 - 94 Aligned: 89 Modelled: 85 Confidence: 100.0% Identity: 31% PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase, small subunit; PDBTitle: crystal structure of acetolactate synthase- small subunit from2 thermotoga maritima Phyre2 PDB 2f1f chain A Region: 8 - 94 Aligned: 87 Modelled: 87 Confidence: 100.0% Identity: 30% PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase isozyme iii small subunit; PDBTitle: crystal structure of the regulatory subunit of2 acetohydroxyacid synthase isozyme iii from e. coli Phyre2 PDB 2fgc chain A domain 2 Region: 6 - 82 Aligned: 77 Modelled: 77 Confidence: 100.0% Identity: 35% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2pc6 chain A domain 2 Region: 7 - 82 Aligned: 76 Modelled: 75 Confidence: 100.0% Identity: 32% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2f1f chain A domain 1 Region: 8 - 81 Aligned: 74 Modelled: 74 Confidence: 100.0% Identity: 34% Fold: Ferredoxin-like Superfamily: ACT-like Family: IlvH-like Phyre2 PDB 2f06 chain A domain 2 Region: 11 - 68 Aligned: 57 Modelled: 58 Confidence: 99.5% Identity: 16% Fold: Ferredoxin-like Superfamily: ACT-like Family: BT0572-like Phyre2 PDB 1sc6 chain A domain 3 Region: 9 - 81 Aligned: 72 Modelled: 73 Confidence: 99.4% Identity: 17% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain Phyre2 PDB 1ygy chain A domain 3 Region: 7 - 82 Aligned: 75 Modelled: 76 Confidence: 99.3% Identity: 15% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain Phyre2 PDB 3ibw chain A Region: 5 - 83 Aligned: 79 Modelled: 79 Confidence: 99.2% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a Phyre2 PDB 1ygy chain A Region: 7 - 82 Aligned: 75 Modelled: 76 Confidence: 98.3% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis Phyre2 PDB 2f06 chain B Region: 11 - 54 Aligned: 44 Modelled: 44 Confidence: 98.2% Identity: 18% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron Phyre2 PDB 1u8s chain A domain 2 Region: 8 - 79 Aligned: 72 Modelled: 72 Confidence: 98.2% Identity: 19% Fold: Ferredoxin-like Superfamily: ACT-like Family: Glycine cleavage system transcriptional repressor Phyre2 PDB 1zpv chain A domain 1 Region: 7 - 72 Aligned: 66 Modelled: 65 Confidence: 97.9% Identity: 12% Fold: Ferredoxin-like Superfamily: ACT-like Family: SP0238-like Phyre2 PDB 1u8s chain A domain 1 Region: 4 - 72 Aligned: 67 Modelled: 69 Confidence: 97.9% Identity: 10% Fold: Ferredoxin-like Superfamily: ACT-like Family: Glycine cleavage system transcriptional repressor Phyre2 PDB 1y7p chain B Region: 6 - 88 Aligned: 82 Modelled: 83 Confidence: 97.9% Identity: 15% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein af1403; PDBTitle: 1.9 a crystal structure of a protein of unknown function2 af1403 from archaeoglobus fulgidus, probable metabolic3 regulator Phyre2 PDB 3n0v chain D Region: 7 - 72 Aligned: 66 Modelled: 66 Confidence: 97.8% Identity: 15% PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution Phyre2 PDB 2nyi chain B Region: 5 - 72 Aligned: 68 Modelled: 68 Confidence: 97.8% Identity: 9% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria Phyre2 PDB 3lou chain B Region: 7 - 72 Aligned: 66 Modelled: 66 Confidence: 97.7% Identity: 15% PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution Phyre2 PDB 2qmw chain A domain 2 Region: 8 - 78 Aligned: 71 Modelled: 70 Confidence: 97.6% Identity: 17% Fold: Ferredoxin-like Superfamily: ACT-like Family: Phenylalanine metabolism regulatory domain Phyre2 1 c2pc6C_ 2 c2fgcA_ 3 c2f1fA_ 4 d2fgca2 5 d2pc6a2 6 d2f1fa1 7 d2f06a2 8 d1sc6a3 9 d1ygya3 10 c3ibwA_ 11 c1ygyA_ 12 c2f06B_ 13 d1u8sa2 14 d1zpva1 15 d1u8sa1 16 c1y7pB_ 17 c3n0vD_ 18 c2nyiB_ 19 c3louB_ 20 d2qmwa2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2pc6C_ 100.0 29 PDB header:lyase Chain: C: PDB Molecule:probable acetolactate synthase isozyme iii (small subunit); PDBTitle: crystal structure of putative acetolactate synthase- small subunit2 from nitrosomonas europaea 2 c2fgcA_ 100.0 31 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase, small subunit; PDBTitle: crystal structure of acetolactate synthase- small subunit from2 thermotoga maritima 3 c2f1fA_ 100.0 30 PDB header:transferase Chain: A: PDB Molecule:acetolactate synthase isozyme iii small subunit; PDBTitle: crystal structure of the regulatory subunit of2 acetohydroxyacid synthase isozyme iii from e. coli 4 d2fgca2 100.0 35 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 5 d2pc6a2 100.0 32 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 6 d2f1fa1 100.0 34 Fold:Ferredoxin-like Superfamily:ACT-like Family:IlvH-like 7 d2f06a2 99.5 16 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 8 d1sc6a3 99.4 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 9 d1ygya3 99.3 15 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain 10 c3ibwA_ 99.2 14 PDB header:transferase Chain: A: PDB Molecule:gtp pyrophosphokinase; PDBTitle: crystal structure of the act domain from gtp2 pyrophosphokinase of chlorobium tepidum. northeast3 structural genomics consortium target ctr148a 11 c1ygyA_ 98.3 15 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis 12 c2f06B_ 98.2 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron 13 d1u8sa2 98.2 19 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 14 d1zpva1 97.9 12 Fold:Ferredoxin-like Superfamily:ACT-like Family:SP0238-like 15 d1u8sa1 97.9 10 Fold:Ferredoxin-like Superfamily:ACT-like Family:Glycine cleavage system transcriptional repressor 16 c1y7pB_ 97.9 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein af1403; PDBTitle: 1.9 a crystal structure of a protein of unknown function2 af1403 from archaeoglobus fulgidus, probable metabolic3 regulator 17 c3n0vD_ 97.8 15 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution 18 c2nyiB_ 97.8 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:unknown protein; PDBTitle: crystal structure of an unknown protein from galdieria2 sulphuraria 19 c3louB_ 97.7 15 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution 20 d2qmwa2 97.6 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 21 c1u8sB_ not modelled 97.5 10 PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor 22 c3obiC_ not modelled 97.5 13 PDB header:hydrolase Chain: C: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution 23 c3o1lB_ not modelled 97.4 10 PDB header:hydrolase Chain: B: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution 24 c3luyA_ not modelled 97.4 17 PDB header:isomerase Chain: A: PDB Molecule:probable chorismate mutase; PDBTitle: putative chorismate mutase from bifidobacterium adolescentis 25 c3nrbD_ not modelled 97.4 18 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution 26 c2qmwA_ not modelled 97.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of the prephenate dehydratase (pdt) from2 staphylococcus aureus subsp. aureus mu50 27 c3mwbA_ not modelled 97.3 18 PDB header:lyase Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of prephenate dehydratase in complex with l-phe2 from arthrobacter aurescens to 2.0a 28 c1ybaC_ not modelled 97.3 17 PDB header:oxidoreductase Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: the active form of phosphoglycerate dehydrogenase 29 c2qmxB_ not modelled 97.3 16 PDB header:ligase Chain: B: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of l-phe inhibited prephenate dehydratase from2 chlorobium tepidum tls 30 d1phza1 not modelled 97.2 16 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 31 c3k5pA_ not modelled 96.9 8 PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of amino acid-binding act: d-isomer specific 2-2 hydroxyacid dehydrogenase catalytic domain from brucella melitensis 32 c3mtjA_ not modelled 96.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a 33 d2f06a1 not modelled 96.8 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 34 d2hmfa3 not modelled 94.5 17 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 35 c2dtjA_ not modelled 93.8 13 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: crystal structure of regulatory subunit of aspartate kinase2 from corynebacterium glutamicum 36 d2hmfa2 not modelled 93.6 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 37 d2nzca1 not modelled 93.2 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:TM1266-like 38 c3mahA_ not modelled 92.8 14 PDB header:transferase Chain: A: PDB Molecule:aspartokinase; PDBTitle: a putative c-terminal regulatory domain of aspartate kinase from2 porphyromonas gingivalis w83. 39 d2cdqa2 not modelled 92.7 23 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 40 c2phmA_ not modelled 91.9 14 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (phenylalanine-4-hydroxylase); PDBTitle: structure of phenylalanine hydroxylase dephosphorylated 41 c3p96A_ not modelled 91.3 12 PDB header:hydrolase Chain: A: PDB Molecule:phosphoserine phosphatase serb; PDBTitle: crystal structure of phosphoserine phosphatase serb from mycobacterium2 avium, native form 42 c3mgjA_ not modelled 91.2 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1480; PDBTitle: crystal structure of the saccharop_dh_n domain of mj14802 protein from methanococcus jannaschii. northeast structural3 genomics consortium target mjr83a. 43 c1tdjA_ not modelled 90.6 15 PDB header:allostery Chain: A: PDB Molecule:biosynthetic threonine deaminase; PDBTitle: threonine deaminase (biosynthetic) from e. coli 44 c2re1A_ not modelled 90.3 16 PDB header:transferase Chain: A: PDB Molecule:aspartokinase, alpha and beta subunits; PDBTitle: crystal structure of aspartokinase alpha and beta subunits 45 d1rwua_ not modelled 90.1 13 Fold:Ferredoxin-like Superfamily:YbeD/HP0495-like Family:YbeD-like 46 c1rwuA_ not modelled 90.1 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0250 protein ybed; PDBTitle: solution structure of conserved protein ybed from e. coli 47 c2zhoB_ not modelled 90.1 20 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of the regulatory subunit of aspartate2 kinase from thermus thermophilus (ligand free form) 48 d2cdqa3 not modelled 88.6 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 49 c2rjzA_ not modelled 87.5 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pilo protein; PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa 50 c3l76B_ not modelled 87.4 16 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of aspartate kinase from synechocystis 51 c3ab4K_ not modelled 87.1 15 PDB header:transferase Chain: K: PDB Molecule:aspartokinase; PDBTitle: crystal structure of feedback inhibition resistant mutant of aspartate2 kinase from corynebacterium glutamicum in complex with lysine and3 threonine 52 d2j0wa2 not modelled 84.0 25 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 53 c3c1nA_ not modelled 81.0 12 PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine 54 c2az1B_ not modelled 74.4 20 PDB header:transferase Chain: B: PDB Molecule:nucleoside diphosphate kinase; PDBTitle: structure of a halophilic nucleoside diphosphate kinase2 from halobacterium salinarum 55 c2dgbA_ not modelled 70.3 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein purs; PDBTitle: structure of thermus thermophilus purs in the p21 form 56 d2j0wa3 not modelled 69.7 22 Fold:Ferredoxin-like Superfamily:ACT-like Family:Aspartokinase allosteric domain-like 57 c2cdqB_ not modelled 65.8 17 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine 58 d1tdja2 not modelled 50.1 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:Allosteric threonine deaminase C-terminal domain 59 d1gtda_ not modelled 46.2 12 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 60 c2j0wA_ not modelled 45.7 20 PDB header:transferase Chain: A: PDB Molecule:lysine-sensitive aspartokinase 3; PDBTitle: crystal structure of e. coli aspartokinase iii in complex2 with aspartate and adp (r-state) 61 d2az3a1 not modelled 38.5 19 Fold:Ferredoxin-like Superfamily:Nucleoside diphosphate kinase, NDK Family:Nucleoside diphosphate kinase, NDK 62 c3cg4A_ not modelled 33.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 63 d1p4xa2 not modelled 32.7 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 64 c2jsxA_ not modelled 32.0 16 PDB header:chaperone Chain: A: PDB Molecule:protein napd; PDBTitle: solution structure of the e. coli tat proofreading2 chaperone protein napd 65 d1be4a_ not modelled 31.2 15 Fold:Ferredoxin-like Superfamily:Nucleoside diphosphate kinase, NDK Family:Nucleoside diphosphate kinase, NDK 66 d1kona_ not modelled 31.1 15 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 67 c3r9lA_ not modelled 30.4 9 PDB header:transferase Chain: A: PDB Molecule:nucleoside diphosphate kinase; PDBTitle: crystal structure of nucleoside diphosphate kinase from giardia2 lamblia featuring a disordered dinucleotide binding site 68 c3eodA_ not modelled 30.3 12 PDB header:signaling protein Chain: A: PDB Molecule:protein hnr; PDBTitle: crystal structure of n-terminal domain of e. coli rssb 69 d1qkka_ not modelled 28.1 8 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 70 d1dcfa_ not modelled 26.8 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:Receiver domain of the ethylene receptor 71 d2joqa1 not modelled 25.7 12 Fold:Ferredoxin-like Superfamily:YbeD/HP0495-like Family:HP0495-like 72 d2a9pa1 not modelled 25.0 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 73 c2zw2B_ not modelled 21.5 12 PDB header:ligase Chain: B: PDB Molecule:putative uncharacterized protein sts178; PDBTitle: crystal structure of formylglycinamide ribonucleotide amidotransferase2 iii from sulfolobus tokodaii (stpurs) 74 c3crnA_ not modelled 21.0 15 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like; PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 75 d1mb3a_ not modelled 19.2 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 76 c3hdgE_ not modelled 19.0 12 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes 77 d1t4aa_ not modelled 18.3 12 Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase 78 c3cfyA_ not modelled 18.3 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus 79 d2b3tb1 not modelled 17.7 13 Fold:Release factor Superfamily:Release factor Family:Release factor 80 c3gt7A_ not modelled 17.7 19 PDB header:hydrolase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus 81 d1mw7a_ not modelled 17.4 15 Fold:YebC-like Superfamily:YebC-like Family:YebC-like 82 c1zbtA_ not modelled 17.2 10 PDB header:translation Chain: A: PDB Molecule:peptide chain release factor 1; PDBTitle: crystal structure of peptide chain release factor 1 (rf-1) (smu.1085)2 from streptococcus mutans at 2.34 a resolution 83 d2b4aa1 not modelled 17.0 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 84 c2rjnA_ not modelled 16.4 14 PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis 85 d1xjca_ not modelled 16.1 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 86 d1wxma1 not modelled 15.0 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 87 d1zh2a1 not modelled 14.9 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 88 c2qxyB_ not modelled 14.9 19 PDB header:transcription Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from thermotoga2 maritima 89 d1kgsa2 not modelled 14.8 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 90 c2rdmB_ not modelled 14.5 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419 91 d2ayxa1 not modelled 14.1 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 92 c2gwrA_ not modelled 13.8 14 PDB header:signaling protein Chain: A: PDB Molecule:dna-binding response regulator mtra; PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis 93 c2qr3A_ not modelled 13.7 23 PDB header:transcription Chain: A: PDB Molecule:two-component system response regulator; PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis 94 c3ktoA_ not modelled 13.5 7 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein2 from pseudoalteromonas atlantica 95 d1w25a1 not modelled 13.2 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 96 c3r0jA_ not modelled 13.1 14 PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis 97 c2ayxA_ not modelled 13.1 13 PDB header:transferase Chain: A: PDB Molecule:sensor kinase protein rcsc; PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain 98 c3cu5B_ not modelled 13.0 13 PDB header:transcription regulator Chain: B: PDB Molecule:two component transcriptional regulator, arac family; PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg 99 c3d5cX_ not modelled 13.0 16 PDB header:ribosome Chain: X: PDB Molecule:peptide chain release factor 1; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0