Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	Q	V	V	V	F	Q	K	M	F	E	Q	V	R	K	E	Q	N	F	S	W	F	Y	S	E	L	K	H	H	R	I	A	H	Y	I	Y	Y	L	A	T	D	N	I	R	I	I	T	H	D	D	T	V	L	L	L	R	G	T	R
Secondary structure
SS confidence
Disorder		?	?																																																							?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	L	L	K	V	S	T	T	K	N	P	A	K	I	K	E	A	A	L	L	H	I	C	G	K	S	T	F	R	E	Y	C	S	T	L	A	G	A	G	V	F	R	W	V	T	D	V	N	H	N	K	R	S	Y	Y	A	I	D	N	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.
Sequence		L	L	Y	I	E	D	V	E	N	N	K	P	L	I
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2hh8 chain A domain 1 Region: 2 - 128 Aligned: 127 Modelled: 127 Confidence: 100.0% Identity: 46% Fold: YdfO-like Superfamily: YdfO-like Family: YdfO-like Phyre2 PDB 3elg chain A domain 1 Region: 30 - 124 Aligned: 87 Modelled: 95 Confidence: 89.3% Identity: 8% Fold: BLIP-like Superfamily: BT0923-like Family: BT0923-like Phyre2 PDB 3due chain A domain 1 Region: 28 - 126 Aligned: 91 Modelled: 99 Confidence: 82.4% Identity: 7% Fold: BLIP-like Superfamily: BT0923-like Family: BT0923-like Phyre2 PDB 3ot2 chain B Region: 62 - 120 Aligned: 46 Modelled: 59 Confidence: 24.4% Identity: 9% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution Phyre2 PDB 3ot2 chain A Region: 62 - 120 Aligned: 46 Modelled: 59 Confidence: 24.4% Identity: 9% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution Phyre2 PDB 2k7b chain A Region: 2 - 97 Aligned: 64 Modelled: 64 Confidence: 24.2% Identity: 11% PDB header:metal binding protein Chain: A: PDB Molecule:calcium-binding protein 1; PDBTitle: nmr structure of mg2+-bound cabp1 n-domain Phyre2 PDB 1irj chain G Region: 72 - 97 Aligned: 26 Modelled: 26 Confidence: 23.7% Identity: 19% PDB header:metal binding protein Chain: G: PDB Molecule:migration inhibitory factor-related protein 14; PDBTitle: crystal structure of the mrp14 complexed with chaps Phyre2 PDB 3l23 chain A Region: 83 - 110 Aligned: 28 Modelled: 27 Confidence: 22.9% Identity: 11% PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution Phyre2 PDB 2ph7 chain B Region: 88 - 111 Aligned: 24 Modelled: 24 Confidence: 22.1% Identity: 25% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein af_2093; PDBTitle: crystal structure of af2093 from archaeoglobus fulgidus Phyre2 PDB 1avs chain A Region: 2 - 97 Aligned: 64 Modelled: 64 Confidence: 21.7% Identity: 13% Fold: EF Hand-like Superfamily: EF-hand Family: Calmodulin-like Phyre2 PDB 1m7l chain A Region: 3 - 21 Aligned: 19 Modelled: 19 Confidence: 21.2% Identity: 37% PDB header:sugar binding protein Chain: A: PDB Molecule:pulmonary surfactant-associated protein d; PDBTitle: solution structure of the coiled-coil trimerization domain2 from lung surfactant protein d Phyre2 PDB 1m39 chain A Region: 6 - 93 Aligned: 56 Modelled: 56 Confidence: 20.0% Identity: 18% Fold: EF Hand-like Superfamily: EF-hand Family: Calmodulin-like Phyre2 PDB 2w3n chain A Region: 5 - 50 Aligned: 46 Modelled: 46 Confidence: 18.4% Identity: 15% PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase 2; PDBTitle: structure and inhibition of the co2-sensing carbonic2 anhydrase can2 from the pathogenic fungus cryptococcus3 neoformans Phyre2 PDB 1f8a chain B Region: 2 - 87 Aligned: 63 Modelled: 66 Confidence: 18.2% Identity: 11% PDB header:isomerase Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima- PDBTitle: structural basis for the phosphoserine-proline recognition2 by group iv ww domains Phyre2 PDB 3obe chain B Region: 83 - 109 Aligned: 27 Modelled: 23 Confidence: 18.1% Identity: 11% PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution Phyre2 PDB 1wxa chain A domain 1 Region: 40 - 80 Aligned: 38 Modelled: 41 Confidence: 16.5% Identity: 18% Fold: beta-Grasp (ubiquitin-like) Superfamily: Ubiquitin-like Family: Ras-binding domain, RBD Phyre2 PDB 2gax chain A domain 1 Region: 46 - 99 Aligned: 52 Modelled: 54 Confidence: 16.2% Identity: 8% Fold: Peptidyl-tRNA hydrolase II Superfamily: Peptidyl-tRNA hydrolase II Family: Peptidyl-tRNA hydrolase II Phyre2 PDB 2rqs chain A Region: 8 - 87 Aligned: 58 Modelled: 58 Confidence: 16.1% Identity: 17% PDB header:isomerase Chain: A: PDB Molecule:parvulin-like peptidyl-prolyl isomerase; PDBTitle: 3d structure of pin from the psychrophilic archeon cenarcheaum2 symbiosum (cspin) Phyre2 PDB 1xk4 chain A domain 1 Region: 67 - 97 Aligned: 31 Modelled: 31 Confidence: 16.0% Identity: 13% Fold: EF Hand-like Superfamily: EF-hand Family: S100 proteins Phyre2 PDB 1ekj chain A Region: 9 - 50 Aligned: 42 Modelled: 42 Confidence: 15.9% Identity: 7% Fold: Resolvase-like Superfamily: beta-carbonic anhydrase, cab Family: beta-carbonic anhydrase, cab Phyre2 1 d2hh8a1 2 d3elga1 3 d3duea1 4 c3ot2B_ 5 c3ot2A_ 6 c2k7bA_ 7 c1irjG_ 8 c3l23A_ 9 c2ph7B_ 10 d1avsa_ 11 c1m7lA_ 12 d1m39a_ 13 c2w3nA_ 14 c1f8aB_ 15 c3obeB_ 16 d1wxaa1 17 d2gaxa1 18 c2rqsA_ 19 d1xk4a1 20 d1ekja_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2hh8a1 100.0 46 Fold:YdfO-like Superfamily:YdfO-like Family:YdfO-like 2 d3elga1 89.3 8 Fold:BLIP-like Superfamily:BT0923-like Family:BT0923-like 3 d3duea1 82.4 7 Fold:BLIP-like Superfamily:BT0923-like Family:BT0923-like 4 c3ot2B_ 24.4 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution 5 c3ot2A_ 24.4 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution 6 c2k7bA_ 24.2 11 PDB header:metal binding protein Chain: A: PDB Molecule:calcium-binding protein 1; PDBTitle: nmr structure of mg2+-bound cabp1 n-domain 7 c1irjG_ 23.7 19 PDB header:metal binding protein Chain: G: PDB Molecule:migration inhibitory factor-related protein 14; PDBTitle: crystal structure of the mrp14 complexed with chaps 8 c3l23A_ 22.9 11 PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution 9 c2ph7B_ 22.1 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein af_2093; PDBTitle: crystal structure of af2093 from archaeoglobus fulgidus 10 d1avsa_ 21.7 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 11 c1m7lA_ 21.2 37 PDB header:sugar binding protein Chain: A: PDB Molecule:pulmonary surfactant-associated protein d; PDBTitle: solution structure of the coiled-coil trimerization domain2 from lung surfactant protein d 12 d1m39a_ 20.0 18 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 13 c2w3nA_ 18.4 15 PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase 2; PDBTitle: structure and inhibition of the co2-sensing carbonic2 anhydrase can2 from the pathogenic fungus cryptococcus3 neoformans 14 c1f8aB_ 18.2 11 PDB header:isomerase Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima- PDBTitle: structural basis for the phosphoserine-proline recognition2 by group iv ww domains 15 c3obeB_ 18.1 11 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution 16 d1wxaa1 16.5 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 17 d2gaxa1 16.2 8 Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II 18 c2rqsA_ 16.1 17 PDB header:isomerase Chain: A: PDB Molecule:parvulin-like peptidyl-prolyl isomerase; PDBTitle: 3d structure of pin from the psychrophilic archeon cenarcheaum2 symbiosum (cspin) 19 d1xk4a1 16.0 13 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 20 d1ekja_ 15.9 7 Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab 21 c2qlxA_ not modelled 15.7 13 PDB header:isomerase Chain: A: PDB Molecule:l-rhamnose mutarotase; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose 22 c2qlwA_ not modelled 15.7 13 PDB header:isomerase Chain: A: PDB Molecule:rhau; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum 23 c2hklB_ not modelled 15.3 15 PDB header:transferase Chain: B: PDB Molecule:l,d-transpeptidase; PDBTitle: crystal structure of enterococcus faecium l,d-2 transpeptidase c442s mutant 24 d1dj0a_ not modelled 14.3 12 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase I TruA 25 d3buxb3 not modelled 14.2 39 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 26 c3ec8A_ not modelled 13.9 9 PDB header:cell adhesion Chain: A: PDB Molecule:putative uncharacterized protein flj10324; PDBTitle: the crystal structure of the ra domain of flj10324 (radil) 27 d1i6pa_ not modelled 13.8 20 Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab 28 c2b1uA_ not modelled 13.8 13 PDB header:metal binding protein Chain: A: PDB Molecule:calmodulin-like protein 5; PDBTitle: solution structure of calmodulin-like skin protein c2 terminal domain 29 d1x8da1 not modelled 13.7 21 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YiiL-like 30 d1j55a_ not modelled 12.8 15 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 31 d4icba_ not modelled 12.7 12 Fold:EF Hand-like Superfamily:EF-hand Family:Calbindin D9K 32 d1k8ua_ not modelled 12.7 23 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 33 c2z4hB_ not modelled 12.3 8 PDB header:signaling protein activator Chain: B: PDB Molecule:copper homeostasis protein cutf; PDBTitle: crystal structure of the cpx pathway activator nlpe from2 escherichia coli 34 c1vs3B_ not modelled 12.2 12 PDB header:isomerase Chain: B: PDB Molecule:trna pseudouridine synthase a; PDBTitle: crystal structure of the trna pseudouridine synthase trua from thermus2 thermophilus hb8 35 c2k2aA_ not modelled 12.1 25 PDB header:contractile protein Chain: A: PDB Molecule:troponin c; PDBTitle: solution structure of the apo c terminal domain of lethocerus troponin2 c isoform f1 36 d1urra_ not modelled 12.1 7 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 37 d1f53a_ not modelled 11.6 20 Fold:gamma-Crystallin-like Superfamily:gamma-Crystallin-like Family:Killer toxin-like protein SKLP 38 c2kaxA_ not modelled 11.5 13 PDB header:metal binding protein Chain: A: PDB Molecule:protein s100-a5; PDBTitle: solution structure and dynamics of s100a5 in the apo and2 ca2+ -bound states 39 c2ggmA_ not modelled 11.1 11 PDB header:cell cycle Chain: A: PDB Molecule:centrin-2; PDBTitle: human centrin 2 xeroderma pigmentosum group c protein2 complex 40 c3p6lA_ not modelled 10.9 9 PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_1903)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution 41 d1pvaa_ not modelled 10.8 22 Fold:EF Hand-like Superfamily:EF-hand Family:Parvalbumin 42 d2p5zx2 not modelled 10.7 12 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 43 c2i18A_ not modelled 10.7 18 PDB header:metal binding protein Chain: A: PDB Molecule:calcium-binding protein; PDBTitle: the refined structure of c-terminal domain of an ef-hand2 calcium binding protein from entamoeba histolytica 44 d1g33a_ not modelled 10.6 19 Fold:EF Hand-like Superfamily:EF-hand Family:Parvalbumin 45 d1e8aa_ not modelled 10.5 19 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 46 c2pmyB_ not modelled 10.5 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:ras and ef-hand domain-containing protein; PDBTitle: ef-hand domain of human rasef 47 d2g0wa1 not modelled 10.4 23 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 48 d1apsa_ not modelled 10.3 3 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 49 c2rgiA_ not modelled 10.3 23 PDB header:metal binding protein Chain: A: PDB Molecule:protein s100-a2; PDBTitle: crystal structure of ca2+-free s100a2 at 1.6 a resolution 50 d1c7va_ not modelled 10.1 11 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 51 d1xk4c1 not modelled 9.9 19 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 52 d1j6ya_ not modelled 9.8 18 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 53 d1g5ca_ not modelled 9.7 13 Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab 54 d1eq3a_ not modelled 9.7 10 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 55 d3d37a1 not modelled 9.6 13 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 56 d1fw4a_ not modelled 9.5 12 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 57 c2dk6A_ not modelled 9.4 18 PDB header:signaling protein Chain: A: PDB Molecule:parp11 protein; PDBTitle: solution structure of wwe domain in poly (adp-ribose)2 polymerase family, member 11 (parp 11) 58 c2p5zX_ not modelled 9.4 12 PDB header:structural genomics, unknown function Chain: X: PDB Molecule:type vi secretion system component; PDBTitle: the e. coli c3393 protein is a component of the type vi secretion2 system and exhibits structural similarity to t4 bacteriophage tail3 proteins gp27 and gp5 59 d1oqpa_ not modelled 9.3 10 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 60 c3ucoB_ not modelled 9.2 9 PDB header:lyase/lyase inhibitor Chain: B: PDB Molecule:carbonic anhydrase; PDBTitle: coccomyxa beta-carbonic anhydrase in complex with iodide 61 c2a8cE_ not modelled 9.0 16 PDB header:lyase Chain: E: PDB Molecule:carbonic anhydrase 2; PDBTitle: haemophilus influenzae beta-carbonic anhydrase 62 c2a4jA_ not modelled 9.0 14 PDB header:structural protein Chain: A: PDB Molecule:centrin 2; PDBTitle: solution structure of the c-terminal domain (t94-y172) of2 the human centrin 2 in complex with a 17 residues peptide3 (p1-xpc) from xeroderma pigmentosum group c protein 63 c2l0vB_ not modelled 8.9 23 PDB header:metal binding protein Chain: B: PDB Molecule:protein s100-a16; PDBTitle: solution structure of calcium(ii) bound s100a16 64 c2kz2A_ not modelled 8.7 13 PDB header:metal binding protein Chain: A: PDB Molecule:calmodulin; PDBTitle: calmodulin, c-terminal domain, f92e mutant 65 c3fdqB_ not modelled 8.6 40 PDB header:dna binding protein/dna Chain: B: PDB Molecule:motility gene repressor mogr; PDBTitle: recognition of at-rich dna binding sites by the mogr2 repressor 66 d1zmba1 not modelled 8.5 24 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:Putative acetylxylan esterase-like 67 d1a4pa_ not modelled 8.5 26 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 68 d3cdda2 not modelled 8.5 13 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 69 c1q88B_ not modelled 8.5 17 PDB header:dna binding protein Chain: B: PDB Molecule:39 kda initiator binding protein; PDBTitle: crystal structure of the c-domain of the t.vaginalis inr2 binding protein, ibp39 (monoclinic form) 70 d2acya_ not modelled 8.4 7 Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like 71 d1cb1a_ not modelled 8.4 9 Fold:EF Hand-like Superfamily:EF-hand Family:Calbindin D9K 72 c2ktgA_ not modelled 8.4 11 PDB header:ca-binding protein Chain: A: PDB Molecule:calmodulin, putative; PDBTitle: calmodulin like protein from entamoeba histolytica: solution structure2 and calcium binding properties of a partially folded protein 73 c2k7wB_ not modelled 8.4 29 PDB header:apoptosis Chain: B: PDB Molecule:bcl-2-like protein 11; PDBTitle: bax activation is initiated at a novel interaction site 74 c3ox6C_ not modelled 8.4 19 PDB header:calcium binding protein Chain: C: PDB Molecule:calcium-binding protein 1; PDBTitle: crystal structure of the calcium sensor calcium-binding protein 12 (cabp1) 75 c3h4sE_ not modelled 8.3 13 PDB header:motor protein/calcium binding protein Chain: E: PDB Molecule:kcbp interacting ca2+-binding protein; PDBTitle: structure of the complex of a mitotic kinesin with its2 calcium binding regulator 76 c3lmzA_ not modelled 8.3 13 PDB header:isomerase Chain: A: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase. (yp_001305105.1) from2 parabacteroides distasonis atcc 8503 at 1.44 a resolution 77 c3cnyA_ not modelled 8.2 17 PDB header:biosynthetic protein Chain: A: PDB Molecule:inositol catabolism protein iole; PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution 78 c2ciuA_ not modelled 8.2 18 PDB header:protein transport Chain: A: PDB Molecule:import inner membrane translocase subunit tim21 PDBTitle: structure of the ims domain of the mitochondrial import2 protein tim21 from s. cerevisiae 79 c1ponB_ not modelled 8.2 30 PDB header:calcium-binding protein Chain: B: PDB Molecule:troponin c; PDBTitle: site iii-site iv troponin c heterodimer, nmr 80 d1ftpa_ not modelled 8.1 14 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 81 c1bomB_ not modelled 8.1 33 PDB header:insulin-like brain-secretory peptide Chain: B: PDB Molecule:bombyxin-ii,bombyxin a-6; PDBTitle: three-dimensional structure of bombyxin-ii, an insulin-2 related brain-secretory peptide of the silkmoth bombyx3 mori: comparison with insulin and relaxin 82 c3fs7D_ not modelled 8.0 22 PDB header:metal binding protein Chain: D: PDB Molecule:parvalbumin, thymic; PDBTitle: crystal structure of gallus gallus beta-parvalbumin (avian2 thymic hormone) 83 d1wrka1 not modelled 8.0 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 84 d1m45a_ not modelled 8.0 6 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 85 d2pq3a1 not modelled 8.0 16 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 86 d1ksoa_ not modelled 7.9 23 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 87 c1x5bA_ not modelled 7.9 15 PDB header:protein binding Chain: A: PDB Molecule:signal transducing adaptor molecule 2; PDBTitle: the solution structure of the vhs domain of human signal2 transducing adaptor molecule 2 88 c2bjeA_ not modelled 7.9 10 PDB header:hydrolase Chain: A: PDB Molecule:acylphosphatase; PDBTitle: acylphosphatase from sulfolobus solfataricus. monclinic p212 space group 89 d1sw8a_ not modelled 7.8 20 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 90 d1wdja_ not modelled 7.8 13 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hypothetical protein TT1808 (TTHA1514) 91 c3ereD_ not modelled 7.8 15 PDB header:dna binding protein/dna Chain: D: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator 92 c3ngfA_ not modelled 7.7 27 PDB header:isomerase Chain: A: PDB Molecule:ap endonuclease, family 2; PDBTitle: crystal structure of ap endonuclease, family 2 from brucella2 melitensis 93 d1qx2a_ not modelled 7.6 13 Fold:EF Hand-like Superfamily:EF-hand Family:Calbindin D9K 94 c2kdhA_ not modelled 7.6 11 PDB header:structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: the solution structure of human cardiac troponin c in2 complex with the green tea polyphenol; (-)-3 epigallocatechin-3-gallate 95 d2obha1 not modelled 7.5 15 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like 96 c1ozsA_ not modelled 7.4 13 PDB header:structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: c-domain of human cardiac troponin c in complex with the2 inhibitory region of human cardiac troponin i 97 d1q88a_ not modelled 7.4 17 Fold:39 kda initiator binding protein, IBP39, C-terminal domains Superfamily:39 kda initiator binding protein, IBP39, C-terminal domains Family:39 kda initiator binding protein, IBP39, C-terminal domains 98 d1yuta1 not modelled 7.4 10 Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins 99 d1zaca_ not modelled 7.4 19 Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0