16/01/2012 03:49:08 : INFO  : Run start: Mon Jan 16 03:49:08 GMT 2012
16/01/2012 03:49:08 : INFO  : Initialised job
16/01/2012 03:49:08 : INFO  : Renaming log file 'phyre2_20120116_034908.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/de4eb824eb653d95/phyre_20120116_034908.log'
16/01/2012 03:49:08 : INFO  : Initialised job:
Sequence
>batch____
MDQVVVFQKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNIRIITHDDTVLLLRGTR
NLLKVSTTKNPAKIKEAALLHICGKSTFREYCSTLAGAGVFRWVTDVNHNKRSYYAIDNT
LLYIEDVENNKPLI

16/01/2012 03:49:08 : INFO  : Checked sequence
16/01/2012 03:49:08 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 03:49:08 : INFO  : PSI-BLAST 3 iterations
16/01/2012 03:50:05 : INFO  : PSI-BLAST 5 iterations
16/01/2012 03:50:57 : INFO  : Finished PSI-BLAST
16/01/2012 03:50:57 : INFO  : Running Buildali to generate a3m file
16/01/2012 03:52:40 : INFO  : Converting to HMM
16/01/2012 03:52:40 : INFO  : Calibrating HMM
16/01/2012 03:52:43 : INFO  : Searching HMM database
16/01/2012 03:55:41 : INFO  : Finished buildali
16/01/2012 03:55:41 : INFO  : Predicting secondary structure
16/01/2012 03:55:41 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 03:55:41 : INFO  : Predicting Disordered regions
16/01/2012 03:55:41 : INFO  : Predicted Disorder (Disopred)
16/01/2012 03:55:41 : INFO  : Running memsat_svm check
16/01/2012 04:00:09 : INFO  : Running memsat_svm full
16/01/2012 04:01:44 : INFO  : Predicted Transmembrane (memsat_svm) ID 'de4eb824eb653d95'
16/01/2012 04:01:44 : INFO  : Initialising fold library search
16/01/2012 04:01:44 : INFO  : Initialised search input
16/01/2012 04:01:44 : INFO  : Building Ensemble models
16/01/2012 04:01:44 : INFO  : Building hh.d2hh8a1.model.1.pdb
16/01/2012 04:01:44 : INFO  : Building d2hh8a1.1.pdb
16/01/2012 04:01:44 : INFO  : Building d3elga1.2.pdb
16/01/2012 04:01:45 : INFO  : Building d3duea1.3.pdb
16/01/2012 04:01:45 : INFO  : Building c3ot2B_.4.pdb
16/01/2012 04:01:45 : INFO  : Building c3ot2A_.5.pdb
16/01/2012 04:01:46 : INFO  : Building c2k7bA_.6.pdb
16/01/2012 04:01:46 : INFO  : Building c1irjG_.7.pdb
16/01/2012 04:01:46 : INFO  : Building c3l23A_.8.pdb
16/01/2012 04:01:46 : INFO  : Building c2ph7B_.9.pdb
16/01/2012 04:01:47 : INFO  : Building d1avsa_.10.pdb
16/01/2012 04:01:47 : INFO  : Building c1m7lA_.11.pdb
16/01/2012 04:01:47 : INFO  : Building d1m39a_.12.pdb
16/01/2012 04:01:48 : INFO  : Building c2w3nA_.13.pdb
16/01/2012 04:01:48 : INFO  : Building c1f8aB_.14.pdb
16/01/2012 04:01:48 : INFO  : Building c3obeB_.15.pdb
16/01/2012 04:01:49 : INFO  : Building d1wxaa1.16.pdb
16/01/2012 04:01:49 : INFO  : Building d2gaxa1.17.pdb
16/01/2012 04:01:49 : INFO  : Building c2rqsA_.18.pdb
16/01/2012 04:01:49 : INFO  : Building d1xk4a1.19.pdb
16/01/2012 04:01:50 : INFO  : Building d1ekja_.20.pdb
16/01/2012 04:01:51 : INFO  : Finished HH model building
16/01/2012 04:01:51 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 04:01:54 : INFO  : html domain output complete ID 'de4eb824eb653d95'
16/01/2012 04:05:23 : INFO  : Run end  : Mon Jan 16 04:05:23 GMT 2012
