Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	L	R	E	K	T	I	S	G	A	K	W	S	A	I	A	T	V	I	I	I	G	L	G	L	V	Q	M	T	V	L	A	R	I	I	D	N	H	Q	F	G	L	L	T	V	S	L	V	I	I	A	L	A	D	T	L	S	D	F
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	I	A	N	S	I	I	Q	R	K	E	I	S	H	L	E	L	T	T	L	Y	W	L	N	V	G	L	G	I	V	V	C	V	A	V	F	L	L	S	D	L	I	G	D	V	L	N	N	P	D	L	A	P	L	I	K	T	L	S	L
Secondary structure
SS confidence
Disorder			?	?					?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	F	V	V	I	P	H	G	Q	Q	F	R	A	L	M	Q	K	E	L	E	F	N	K	I	G	M	I	E	T	S	A	V	L	A	G	F	T	C	T	V	V	S	A	H	F	W	P	L	A	M	T	A	I	L	G	Y	L	V	N	S
Secondary structure
SS confidence
Disorder																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	V	R	T	L	L	F	G	Y	F	G	R	K	I	Y	R	P	G	L	H	F	S	L	A	S	V	A	P	N	L	R	F	G	A	W	L	T	A	D	S	I	I	N	Y	L	N	T	N	L	S	T	L	V	L	A	R	I	L	G	A
Secondary structure
SS confidence
Disorder													?	?		?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	V	A	G	G	Y	N	L	A	Y	N	V	A	V	V	P	P	M	K	L	N	P	I	I	T	R	V	L	F	P	A	F	A	K	I	Q	D	D	T	E	K	L	R	V	N	F	Y	K	L	L	S	V	V	G	I	I	N	F	P	A
Secondary structure
SS confidence
Disorder																																						?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	L	G	L	M	V	V	S	N	N	F	V	P	L	V	F	G	E	K	W	N	S	I	I	P	V	L	Q	L	L	C	V	V	G	L	L	R	S	V	G	N	P	I	G	S	L	L	M	A	K	A	R	V	D	I	S	F	K	F	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		V	F	K	T	F	L	F	I	P	A	I	V	I	G	G	Q	M	A	G	A	I	G	V	T	L	G	F	L	L	V	Q	I	I	N	T	I	L	S	Y	F	V	M	I	K	P	V	L	G	S	S	Y	R	Q	Y	I	L	S	L	W	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		P	F	Y	L	S	L	P	T	L	V	V	S	Y	A	L	G	I	V	L	K	G	Q	L	A	L	G	M	L	L	A	V	Q	I	A	T	G	V	L	A	F	V	V	M	I	V	L	S	R	H	P	L	V	V	E	V	K	R	Q	F	C
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.
Sequence		R	S	E	K	M	K	M	L	L	R	A	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?			?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3mku chain A Region: 5 - 410 Aligned: 403 Modelled: 403 Confidence: 99.9% Identity: 14% PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Phyre2 PDB 1pv7 chain A Region: 1 - 481 Aligned: 411 Modelled: 421 Confidence: 65.5% Identity: 10% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: LacY-like proton/sugar symporter Phyre2 PDB 3rko chain N Region: 2 - 315 Aligned: 306 Modelled: 314 Confidence: 16.9% Identity: 14% PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Phyre2 PDB 1pw4 chain A Region: 2 - 474 Aligned: 401 Modelled: 411 Confidence: 12.4% Identity: 7% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: Glycerol-3-phosphate transporter Phyre2 PDB 2iub chain A domain 2 Region: 352 - 405 Aligned: 50 Modelled: 54 Confidence: 12.2% Identity: 20% Fold: Transmembrane helix hairpin Superfamily: Magnesium transport protein CorA, transmembrane region Family: Magnesium transport protein CorA, transmembrane region Phyre2 PDB 1irx chain A domain 1 Region: 455 - 492 Aligned: 38 Modelled: 38 Confidence: 11.8% Identity: 21% Fold: An anticodon-binding domain of class I aminoacyl-tRNA synthetases Superfamily: An anticodon-binding domain of class I aminoacyl-tRNA synthetases Family: C-terminal domain of class I lysyl-tRNA synthetase Phyre2 PDB 2jwa chain A Region: 352 - 381 Aligned: 30 Modelled: 30 Confidence: 11.2% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure Phyre2 PDB 2pco chain A Region: 469 - 484 Aligned: 16 Modelled: 16 Confidence: 10.9% Identity: 6% PDB header:toxin Chain: A: PDB Molecule:latarcin-1; PDBTitle: spatial structure and membrane permeabilization for2 latarcin-1, a spider antimicrobial peptide Phyre2 PDB 3iz5 chain Q Region: 476 - 490 Aligned: 15 Modelled: 15 Confidence: 10.8% Identity: 20% PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l5 (l18p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 3izr chain Q Region: 476 - 490 Aligned: 15 Modelled: 15 Confidence: 10.8% Identity: 20% PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l5 (l18p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 2bbj chain B Region: 135 - 192 Aligned: 58 Modelled: 58 Confidence: 10.5% Identity: 14% PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter Phyre2 PDB 2okr chain C Region: 479 - 488 Aligned: 10 Modelled: 10 Confidence: 10.0% Identity: 30% PDB header:transferase Chain: C: PDB Molecule:map kinase-activated protein kinase 2; PDBTitle: crystal structure of the p38a-mapkap kinase 2 heterodimer Phyre2 PDB 2okr chain F Region: 479 - 488 Aligned: 10 Modelled: 10 Confidence: 10.0% Identity: 30% PDB header:transferase Chain: F: PDB Molecule:map kinase-activated protein kinase 2; PDBTitle: crystal structure of the p38a-mapkap kinase 2 heterodimer Phyre2 PDB 2yuk chain A Region: 465 - 491 Aligned: 27 Modelled: 27 Confidence: 9.9% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia PDBTitle: solution structure of the hmg box of human myeloid/lymphoid2 or mixed-lineage leukemia protein 3 homolog Phyre2 PDB 3nd0 chain A Region: 449 - 485 Aligned: 37 Modelled: 37 Confidence: 9.7% Identity: 16% PDB header:transport protein Chain: A: PDB Molecule:sll0855 protein; PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter Phyre2 PDB 1udx chain A domain 3 Region: 468 - 492 Aligned: 25 Modelled: 25 Confidence: 9.3% Identity: 16% Fold: Obg GTP-binding protein C-terminal domain Superfamily: Obg GTP-binding protein C-terminal domain Family: Obg GTP-binding protein C-terminal domain Phyre2 PDB 2jo8 chain B Region: 470 - 485 Aligned: 16 Modelled: 16 Confidence: 9.2% Identity: 6% PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase 4; PDBTitle: solution structure of c-terminal domain of human mammalian2 sterile 20-like kinase 1 (mst1) Phyre2 PDB 1b9u chain A Region: 386 - 406 Aligned: 21 Modelled: 21 Confidence: 9.0% Identity: 29% PDB header:hydrolase Chain: A: PDB Molecule:protein (atp synthase); PDBTitle: membrane domain of the subunit b of the e.coli atp synthase Phyre2 PDB 1o82 chain A Region: 429 - 485 Aligned: 57 Modelled: 57 Confidence: 9.0% Identity: 12% Fold: Saposin-like Superfamily: Bacteriocin AS-48 Family: Bacteriocin AS-48 Phyre2 PDB 1p84 chain D Region: 431 - 486 Aligned: 56 Modelled: 56 Confidence: 8.9% Identity: 9% PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex Phyre2 1 c3mkuA_ 2 d1pv7a_ 3 c3rkoN_ 4 d1pw4a_ 5 d2iuba2 6 d1irxa1 7 c2jwaA_ 8 c2pcoA_ 9 c3iz5q_ 10 c3izrq_ 11 c2bbjB_ 12 c2okrC_ 13 c2okrF_ 14 c2yukA_ 15 c3nd0A_ 16 d1udxa3 17 c2jo8B_ 18 c1b9uA_ 19 d1o82a_ 20 c1p84D_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3mkuA_ 99.9 14 PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter 2 d1pv7a_ 65.5 10 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter 3 c3rkoN_ 16.9 14 PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 4 d1pw4a_ 12.4 7 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 5 d2iuba2 12.2 20 Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region 6 d1irxa1 11.8 21 Fold:An anticodon-binding domain of class I aminoacyl-tRNA synthetases Superfamily:An anticodon-binding domain of class I aminoacyl-tRNA synthetases Family:C-terminal domain of class I lysyl-tRNA synthetase 7 c2jwaA_ 11.2 17 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 8 c2pcoA_ 10.9 6 PDB header:toxin Chain: A: PDB Molecule:latarcin-1; PDBTitle: spatial structure and membrane permeabilization for2 latarcin-1, a spider antimicrobial peptide 9 c3iz5q_ 10.8 20 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l5 (l18p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 10 c3izrq_ 10.8 20 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l5 (l18p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 11 c2bbjB_ 10.5 14 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 12 c2okrC_ 10.0 30 PDB header:transferase Chain: C: PDB Molecule:map kinase-activated protein kinase 2; PDBTitle: crystal structure of the p38a-mapkap kinase 2 heterodimer 13 c2okrF_ 10.0 30 PDB header:transferase Chain: F: PDB Molecule:map kinase-activated protein kinase 2; PDBTitle: crystal structure of the p38a-mapkap kinase 2 heterodimer 14 c2yukA_ 9.9 15 PDB header:transferase Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia PDBTitle: solution structure of the hmg box of human myeloid/lymphoid2 or mixed-lineage leukemia protein 3 homolog 15 c3nd0A_ 9.7 16 PDB header:transport protein Chain: A: PDB Molecule:sll0855 protein; PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter 16 d1udxa3 9.3 16 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 17 c2jo8B_ 9.2 6 PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase 4; PDBTitle: solution structure of c-terminal domain of human mammalian2 sterile 20-like kinase 1 (mst1) 18 c1b9uA_ 9.0 29 PDB header:hydrolase Chain: A: PDB Molecule:protein (atp synthase); PDBTitle: membrane domain of the subunit b of the e.coli atp synthase 19 d1o82a_ 9.0 12 Fold:Saposin-like Superfamily:Bacteriocin AS-48 Family:Bacteriocin AS-48 20 c1p84D_ 8.9 9 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 21 c1r6rA_ not modelled 8.7 15 PDB header:viral protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: solution structure of dengue virus capsid protein reveals a2 new fold 22 d1r6ra_ not modelled 8.7 15 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 23 c1qvrB_ not modelled 8.7 23 PDB header:chaperone Chain: B: PDB Molecule:clpb protein; PDBTitle: crystal structure analysis of clpb 24 c3lmbA_ not modelled 8.4 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein olei01261 with unknown function2 from chlorobaculum tepidum tls 25 d2hkja2 not modelled 8.3 11 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:DNA gyrase/MutL, second domain 26 d1wwra1 not modelled 8.2 12 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 27 c2qdqA_ not modelled 8.2 9 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: crystal structure of the talin dimerisation domain 28 d2q7ra1 not modelled 8.1 19 Fold:MAPEG domain-like Superfamily:MAPEG domain-like Family:MAPEG domain 29 d2fyuk1 not modelled 8.1 16 Fold:Single transmembrane helix Superfamily:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 30 c2l16A_ not modelled 8.1 21 PDB header:protein transport Chain: A: PDB Molecule:sec-independent protein translocase protein tatad; PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles 31 d1sfka_ not modelled 8.0 17 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 32 c3trrA_ not modelled 8.0 8 PDB header:isomerase Chain: A: PDB Molecule:probable enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus 33 d3ehbb2 not modelled 8.0 9 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 34 c3cwbQ_ not modelled 8.0 6 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 35 c3u5en_ not modelled 8.0 11 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l15-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 resolution 36 c3izcq_ not modelled 8.0 11 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein rpl5 (l18p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 37 c3izsq_ not modelled 8.0 11 PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein rpl5 (l18p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 38 c3u5in_ not modelled 8.0 11 PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein l15-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution 39 d1j2jb_ not modelled 7.7 12 Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain 40 d2p7tc1 not modelled 7.7 17 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 41 c2ww9B_ not modelled 7.7 8 PDB header:ribosome Chain: B: PDB Molecule:protein transport protein sss1; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome 42 c1m2zB_ not modelled 7.6 44 PDB header:hormone/hormone activator Chain: B: PDB Molecule:nuclear receptor coactivator 2; PDBTitle: crystal structure of a dimer complex of the human2 glucocorticoid receptor ligand-binding domain bound to3 dexamethasone and a tif2 coactivator motif 43 c3qnqD_ not modelled 7.6 16 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 44 d1l0nk_ not modelled 7.6 15 Fold:Single transmembrane helix Superfamily:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 45 c3h81A_ not modelled 7.6 12 PDB header:lyase Chain: A: PDB Molecule:enoyl-coa hydratase echa8; PDBTitle: crystal structure of enoyl-coa hydratase from mycobacterium2 tuberculosis 46 c3pxiB_ not modelled 7.5 23 PDB header:protein binding Chain: B: PDB Molecule:negative regulator of genetic competence clpc/mecb; PDBTitle: structure of meca108:clpc 47 d1z3aa1 not modelled 7.5 11 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 48 d1e7la1 not modelled 7.4 24 Fold:LEM/SAP HeH motif Superfamily:Recombination endonuclease VII, C-terminal and dimerization domains Family:Recombination endonuclease VII, C-terminal and dimerization domains 49 c1m2zE_ not modelled 7.4 44 PDB header:hormone/hormone activator Chain: E: PDB Molecule:nuclear receptor coactivator 2; PDBTitle: crystal structure of a dimer complex of the human2 glucocorticoid receptor ligand-binding domain bound to3 dexamethasone and a tif2 coactivator motif 50 c3dh4A_ not modelled 7.4 12 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 51 d1x6fa1 not modelled 7.3 32 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 52 d1xqoa_ not modelled 7.2 6 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:AgoG-like 53 c2xq2A_ not modelled 7.2 11 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 54 c1q2iA_ not modelled 7.1 10 PDB header:antitumor protein Chain: A: PDB Molecule:pnc27; PDBTitle: nmr solution structure of a peptide from the mdm-2 binding2 domain of the p53 protein that is selectively cytotoxic to3 cancer cells 55 c2z99A_ not modelled 7.1 13 PDB header:cell cycle Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of scpb from mycobacterium tuberculosis 56 c3fshC_ not modelled 7.1 12 PDB header:ligase Chain: C: PDB Molecule:autocrine motility factor receptor, isoform 2; PDBTitle: crystal structure of the ubiquitin conjugating enzyme2 ube2g2 bound to the g2br domain of ubiquitin ligase gp78 57 c3hinA_ not modelled 7.1 15 PDB header:lyase Chain: A: PDB Molecule:putative 3-hydroxybutyryl-coa dehydratase; PDBTitle: crystal structure of putative enoyl-coa hydratase from2 rhodopseudomonas palustris cga009 58 c1qcrD_ not modelled 7.0 6 PDB header: PDB COMPND: 59 c2ap7A_ not modelled 6.9 47 PDB header:antibiotic Chain: A: PDB Molecule:bombinin h2; PDBTitle: solution structure of bombinin h2 in dpc micelles 60 c3qooA_ not modelled 6.9 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of hot-dog-like taci_0573 protein from2 thermanaerovibrio acidaminovorans 61 d1cjya2 not modelled 6.9 0 Fold:FabD/lysophospholipase-like Superfamily:FabD/lysophospholipase-like Family:Lysophospholipase 62 c2hn8A_ not modelled 6.9 17 PDB header:viral protein Chain: A: PDB Molecule:protein pb1-f2; PDBTitle: structural characterization and oligomerization of pb1-f2,2 a pro-apoptotic influenza a virus protein 63 c3jteA_ not modelled 6.8 16 PDB header:protein binding Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum 64 c2hw5F_ not modelled 6.8 12 PDB header:lyase Chain: F: PDB Molecule:enoyl-coa hydratase; PDBTitle: the crystal structure of human enoyl-coenzyme a (coa) hydratase short2 chain 1, echs1 65 c3g64A_ not modelled 6.8 17 PDB header:lyase Chain: A: PDB Molecule:putative enoyl-coa hydratase; PDBTitle: crystal structure of putative enoyl-coa hydratase from streptomyces2 coelicolor a3(2) 66 c1yhnB_ not modelled 6.8 25 PDB header:protein transport Chain: B: PDB Molecule:rab interacting lysosomal protein; PDBTitle: structure basis of rilp recruitment by rab7 67 d1jo5a_ not modelled 6.7 14 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 68 c2qziA_ not modelled 6.7 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a conserved protein of unknown function from2 streptococcus thermophilus lmg 18311. 69 c3emlA_ not modelled 6.7 11 PDB header:membrane protein, receptor Chain: A: PDB Molecule:human adenosine a2a receptor/t4 lysozyme chimera; PDBTitle: the 2.6 a crystal structure of a human a2a adenosine2 receptor bound to zm241385. 70 d1krra_ not modelled 6.7 30 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 71 c2i88A_ not modelled 6.7 12 PDB header:membrane protein Chain: A: PDB Molecule:colicin-e1; PDBTitle: crystal structure of the channel-forming domain of colicin2 e1 72 c3a4cA_ not modelled 6.7 5 PDB header:cell cycle, replication Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: crystal structure of cdt1 c terminal domain 73 c1sneA_ not modelled 6.6 100 PDB header:de novo protein Chain: A: PDB Molecule:tetrameric beta-beta-alpha mini-protein; PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein 74 c1sneB_ not modelled 6.6 100 PDB header:de novo protein Chain: B: PDB Molecule:tetrameric beta-beta-alpha mini-protein; PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein 75 d2diia1 not modelled 6.5 19 Fold:BSD domain-like Superfamily:BSD domain-like Family:BSD domain 76 c2qnaB_ not modelled 6.5 28 PDB header:transport protein Chain: B: PDB Molecule:snurportin-1; PDBTitle: crystal structure of human importin-beta (127-876) in complex with the2 ibb-domain of snurportin1 (1-65) 77 c2g9pA_ not modelled 6.5 19 PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a; PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom 78 d2a5yb1 not modelled 6.5 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CED-4 C-terminal domain-like 79 c1irxA_ not modelled 6.4 21 PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of class i lysyl-trna synthetase 80 c1vdfB_ not modelled 6.4 14 PDB header:extracellular matrix protein Chain: B: PDB Molecule:cartilage oligomeric matrix protein; PDBTitle: assembly domain of cartilage oligomeric matrix protein 81 c2diiA_ not modelled 6.4 19 PDB header:transcription Chain: A: PDB Molecule:tfiih basal transcription factor complex p62 PDBTitle: solution structure of the bsd domain of human tfiih basal2 transcription factor complex p62 subunit 82 c1t6sB_ not modelled 6.4 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a conserved hypothetical protein from chlorobium2 tepidum 83 c2ap8A_ not modelled 6.4 43 PDB header:antibiotic Chain: A: PDB Molecule:bombinin h4; PDBTitle: solution structure of bombinin h4 in dpc micelles 84 d2o5ha1 not modelled 6.3 10 Fold:NMB0513-like Superfamily:NMB0513-like Family:NMB0513-like 85 c3hrxD_ not modelled 6.3 16 PDB header:lyase Chain: D: PDB Molecule:probable enoyl-coa hydratase; PDBTitle: crystal structure of phenylacetic acid degradation protein paag 86 c3kikF_ not modelled 6.3 10 PDB header:transcription Chain: F: PDB Molecule:saga-associated factor 11; PDBTitle: sgf11:sus1 complex 87 c3kikE_ not modelled 6.3 10 PDB header:transcription Chain: E: PDB Molecule:saga-associated factor 11; PDBTitle: sgf11:sus1 complex 88 c2kncA_ not modelled 6.3 16 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 89 c1jdmA_ not modelled 6.3 3 PDB header:membrane protein Chain: A: PDB Molecule:sarcolipin; PDBTitle: nmr structure of sarcolipin 90 c3kikH_ not modelled 6.2 10 PDB header:transcription Chain: H: PDB Molecule:saga-associated factor 11; PDBTitle: sgf11:sus1 complex 91 d1unda_ not modelled 6.2 14 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 92 c2nx8A_ not modelled 6.2 11 PDB header:hydrolase Chain: A: PDB Molecule:trna-specific adenosine deaminase; PDBTitle: the crystal structure of the trna-specific adenosine deaminase from2 streptococcus pyogenes 93 d1wgma_ not modelled 6.2 13 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 94 c3kikG_ not modelled 6.2 10 PDB header:transcription Chain: G: PDB Molecule:saga-associated factor 11; PDBTitle: sgf11:sus1 complex 95 c1zxaB_ not modelled 6.2 11 PDB header:transferase Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme; PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia 96 c2kesA_ not modelled 6.2 33 PDB header:protein binding Chain: A: PDB Molecule:synphilin-1; PDBTitle: solution structure of the coiled-coil domain of synphilin-1 97 c2ww9O_ not modelled 6.1 14 PDB header:ribosome Chain: O: PDB Molecule:60s ribosomal protein l39; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome 98 c3kjlF_ not modelled 6.1 10 PDB header:transcription Chain: F: PDB Molecule:saga-associated factor 11; PDBTitle: sgf11:sus1 complex 99 c3zs9D_ not modelled 6.1 29 PDB header:hydrolase/transport protein Chain: D: PDB Molecule:golgi to er traffic protein 2; PDBTitle: s. cerevisiae get3-adp-alf4- complex with a cytosolic get2 fragment

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0