Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	S	Y	A	N	H	Q	A	L	A	G	L	T	L	G	K	S	T	D	Y	R	D	T	Y	D	A	S	L	L	Q	G	V	P	R	S	L	N	R	D	P	L	G	L	K	A	D	N	L	P	F	H	G	T	D	I	W	T	L	Y
Secondary structure
SS confidence
Disorder		?	?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?		?		?	?																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	L	S	W	L	N	A	K	G	L	P	Q	V	A	V	G	H	V	E	L	D	Y	T	S	V	N	L	I	E	S	K	S	F	K	L	Y	L	N	S	F	N	Q	T	R	F	N	N	W	D	E	V	R	Q	T	L	E	R	D	L	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	C	A	Q	G	K	I	S	V	A	L	Y	R	L	D	E	L	E	G	Q	P	I	G	H	F	N	G	T	C	I	D	D	Q	D	I	T	I	D	N	Y	E	F	T	T	D	Y	L	E	N	A	T	C	G	E	K	V	V	E	E	T
Secondary structure
SS confidence
Disorder				?											?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		L	V	S	H	L	L	K	S	N	C	L	I	T	H	Q	P	D	W	G	S	L	Q	I	Q	Y	R	G	R	Q	I	D	R	E	K	L	L	R	Y	L	V	S	F	R	H	H	N	E	F	H	E	Q	C	V	E	R	I	F	N	D	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Sequence		L	R	F	C	Q	P	E	K	L	S	V	Y	A	R	Y	T	R	R	G	G	L	D	I	N	P	W	R	S	N	S	D	F	V	P	S	T	T	R	L	V	R	Q
Secondary structure
SS confidence
Disorder																																			?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3bp1 chain A Region: 21 - 282 Aligned: 254 Modelled: 261 Confidence: 100.0% Identity: 64% PDB header:oxidoreductase Chain: A: PDB Molecule:nadph-dependent 7-cyano-7-deazaguanine reductase; PDBTitle: crystal structure of putative 7-cyano-7-deazaguanine2 reductase quef from vibrio cholerae o1 biovar eltor Phyre2 PDB 1wm9 chain D Region: 186 - 254 Aligned: 69 Modelled: 69 Confidence: 97.8% Identity: 19% PDB header:hydrolase Chain: D: PDB Molecule:gtp cyclohydrolase i; PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8 Phyre2 PDB 1wur chain A domain 1 Region: 186 - 254 Aligned: 69 Modelled: 69 Confidence: 97.8% Identity: 19% Fold: T-fold Superfamily: Tetrahydrobiopterin biosynthesis enzymes-like Family: GTP cyclohydrolase I Phyre2 PDB 1is7 chain F Region: 186 - 254 Aligned: 69 Modelled: 69 Confidence: 95.5% Identity: 20% PDB header:hydrolase/protein binding Chain: F: PDB Molecule:gtp cyclohydrolase i; PDBTitle: crystal structure of rat gtpchi/gfrp stimulatory complex Phyre2 PDB 1wpl chain A Region: 186 - 254 Aligned: 69 Modelled: 69 Confidence: 95.5% Identity: 20% Fold: T-fold Superfamily: Tetrahydrobiopterin biosynthesis enzymes-like Family: GTP cyclohydrolase I Phyre2 PDB 1a8r chain A Region: 186 - 254 Aligned: 69 Modelled: 69 Confidence: 95.2% Identity: 19% Fold: T-fold Superfamily: Tetrahydrobiopterin biosynthesis enzymes-like Family: GTP cyclohydrolase I Phyre2 PDB 1rg9 chain D Region: 61 - 238 Aligned: 164 Modelled: 178 Confidence: 77.9% Identity: 16% PDB header:transferase Chain: D: PDB Molecule:s-adenosylmethionine synthetase; PDBTitle: s-adenosylmethionine synthetase complexed with sam and ppnp Phyre2 PDB 3iml chain B Region: 61 - 238 Aligned: 154 Modelled: 157 Confidence: 60.2% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthetase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from burkholderia2 pseudomallei Phyre2 PDB 2obv chain A Region: 61 - 236 Aligned: 152 Modelled: 158 Confidence: 52.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:s-adenosylmethionine synthetase isoform type-1; PDBTitle: crystal structure of the human s-adenosylmethionine synthetase 1 in2 complex with the product Phyre2 PDB 2f42 chain A Region: 179 - 230 Aligned: 43 Modelled: 52 Confidence: 49.5% Identity: 19% PDB header:chaperone Chain: A: PDB Molecule:stip1 homology and u-box containing protein 1; PDBTitle: dimerization and u-box domains of zebrafish c-terminal of hsp702 interacting protein Phyre2 PDB 3hjh chain A Region: 253 - 267 Aligned: 15 Modelled: 15 Confidence: 48.9% Identity: 53% PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair-coupling factor; PDBTitle: a rigid n-terminal clamp restrains the motor domains of the bacterial2 transcription-repair coupling factor Phyre2 PDB 3bz6 chain A domain 2 Region: 95 - 117 Aligned: 23 Modelled: 23 Confidence: 32.7% Identity: 30% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: PSPTO2686-like Phyre2 PDB 3pg6 chain D Region: 194 - 205 Aligned: 12 Modelled: 12 Confidence: 32.6% Identity: 25% PDB header:ligase Chain: D: PDB Molecule:e3 ubiquitin-protein ligase dtx3l; PDBTitle: the carboxyl terminal domain of human deltex 3-like Phyre2 PDB 2b2n chain A domain 1 Region: 253 - 265 Aligned: 13 Modelled: 13 Confidence: 31.1% Identity: 54% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 1j6r chain A Region: 209 - 267 Aligned: 56 Modelled: 59 Confidence: 31.0% Identity: 27% Fold: Methionine synthase activation domain-like Superfamily: Methionine synthase activation domain-like Family: Hypothetical protein TM0269 Phyre2 PDB 2eyq chain A domain 4 Region: 253 - 265 Aligned: 13 Modelled: 13 Confidence: 30.7% Identity: 54% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Tandem AAA-ATPase domain Phyre2 PDB 2o4t chain A domain 1 Region: 212 - 244 Aligned: 30 Modelled: 33 Confidence: 29.2% Identity: 13% Fold: Left-handed superhelix Superfamily: BH3980-like Family: BH3980-like Phyre2 PDB 3gzf chain D Region: 86 - 134 Aligned: 49 Modelled: 49 Confidence: 28.7% Identity: 18% PDB header:viral protein Chain: D: PDB Molecule:replicase polyprotein 1ab; PDBTitle: structure of the c-terminal domain of nsp4 from feline coronavirus Phyre2 PDB 3rv2 chain B Region: 61 - 236 Aligned: 160 Modelled: 176 Confidence: 27.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from2 mycobacterium marinum Phyre2 PDB 3fpn chain B Region: 253 - 265 Aligned: 13 Modelled: 13 Confidence: 26.2% Identity: 31% PDB header:dna binding protein Chain: B: PDB Molecule:geobacillus stearothermophilus uvrb interaction PDBTitle: crystal structure of uvra-uvrb interaction domains Phyre2 1 c3bp1A_ 2 c1wm9D_ 3 d1wura1 4 c1is7F_ 5 d1wpla_ 6 d1a8ra_ 7 c1rg9D_ 8 c3imlB_ 9 c2obvA_ 10 c2f42A_ 11 c3hjhA_ 12 d3bz6a2 13 c3pg6D_ 14 d2b2na1 15 d1j6ra_ 16 d2eyqa4 17 d2o4ta1 18 c3gzfD_ 19 c3rv2B_ 20 c3fpnB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3bp1A_ 100.0 64 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph-dependent 7-cyano-7-deazaguanine reductase; PDBTitle: crystal structure of putative 7-cyano-7-deazaguanine2 reductase quef from vibrio cholerae o1 biovar eltor 2 c1wm9D_ 97.8 19 PDB header:hydrolase Chain: D: PDB Molecule:gtp cyclohydrolase i; PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8 3 d1wura1 97.8 19 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 4 c1is7F_ 95.5 20 PDB header:hydrolase/protein binding Chain: F: PDB Molecule:gtp cyclohydrolase i; PDBTitle: crystal structure of rat gtpchi/gfrp stimulatory complex 5 d1wpla_ 95.5 20 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 6 d1a8ra_ 95.2 19 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I 7 c1rg9D_ 77.9 16 PDB header:transferase Chain: D: PDB Molecule:s-adenosylmethionine synthetase; PDBTitle: s-adenosylmethionine synthetase complexed with sam and ppnp 8 c3imlB_ 60.2 18 PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthetase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from burkholderia2 pseudomallei 9 c2obvA_ 52.0 16 PDB header:transferase Chain: A: PDB Molecule:s-adenosylmethionine synthetase isoform type-1; PDBTitle: crystal structure of the human s-adenosylmethionine synthetase 1 in2 complex with the product 10 c2f42A_ 49.5 19 PDB header:chaperone Chain: A: PDB Molecule:stip1 homology and u-box containing protein 1; PDBTitle: dimerization and u-box domains of zebrafish c-terminal of hsp702 interacting protein 11 c3hjhA_ 48.9 53 PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair-coupling factor; PDBTitle: a rigid n-terminal clamp restrains the motor domains of the bacterial2 transcription-repair coupling factor 12 d3bz6a2 32.7 30 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PSPTO2686-like 13 c3pg6D_ 32.6 25 PDB header:ligase Chain: D: PDB Molecule:e3 ubiquitin-protein ligase dtx3l; PDBTitle: the carboxyl terminal domain of human deltex 3-like 14 d2b2na1 31.1 54 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 15 d1j6ra_ 31.0 27 Fold:Methionine synthase activation domain-like Superfamily:Methionine synthase activation domain-like Family:Hypothetical protein TM0269 16 d2eyqa4 30.7 54 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 17 d2o4ta1 29.2 13 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 18 c3gzfD_ 28.7 18 PDB header:viral protein Chain: D: PDB Molecule:replicase polyprotein 1ab; PDBTitle: structure of the c-terminal domain of nsp4 from feline coronavirus 19 c3rv2B_ 27.0 18 PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from2 mycobacterium marinum 20 c3fpnB_ 26.2 31 PDB header:dna binding protein Chain: B: PDB Molecule:geobacillus stearothermophilus uvrb interaction PDBTitle: crystal structure of uvra-uvrb interaction domains 21 c3ty1B_ not modelled 19.7 16 PDB header:isomerase Chain: B: PDB Molecule:hypothetical aldose 1-epimerase; PDBTitle: crystal structure of a hypothetical aldose 1-epimerase (kpn_04629)2 from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.90 a3 resolution 22 d1nb9a_ not modelled 16.4 10 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:ATP-dependent riboflavin kinase-like 23 d2pvaa_ not modelled 15.6 18 Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Penicillin V acylase 24 d1t5la1 not modelled 15.5 31 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 25 c2hezB_ not modelled 15.3 21 PDB header:hydrolase Chain: B: PDB Molecule:bile salt hydrolase; PDBTitle: bifidobacterium longum bile salt hydrolase 26 c3bz6A_ not modelled 15.1 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0502 protein pspto_2686; PDBTitle: crystal structure of a conserved protein of unknown function from2 pseudomonas syringae pv. tomato str. dc3000 27 c3op1A_ not modelled 14.5 21 PDB header:transferase Chain: A: PDB Molecule:macrolide-efflux protein; PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae 28 d1n08a_ not modelled 13.9 10 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:ATP-dependent riboflavin kinase-like 29 c3bnwA_ not modelled 12.9 16 PDB header:transferase Chain: A: PDB Molecule:riboflavin kinase, putative; PDBTitle: crystal structure of riboflavin kinase from trypanosoma brucei 30 d1tyja1 not modelled 12.6 25 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 31 d1zv9a1 not modelled 12.4 32 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 32 c3izcW_ not modelled 12.2 22 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 33 c2eyqA_ not modelled 11.8 54 PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor 34 c2im9A_ not modelled 11.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein lpg0564 from legionella pneumophila str.2 philadelphia 1, pfam duf1460 35 d2im9a1 not modelled 11.2 19 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Lpg0564-like 36 c3h8mB_ not modelled 11.0 19 PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 7; PDBTitle: sam domain of human ephrin type-a receptor 7 (epha7) 37 c3lhiA_ not modelled 10.5 21 PDB header:hydrolase Chain: A: PDB Molecule:putative 6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-2 phosphogluconolactonase(yp_207848.1) from neisseria3 gonorrhoeae fa 1090 at 1.33 a resolution 38 c4a1dM_ not modelled 10.3 26 PDB header:ribosome Chain: M: PDB Molecule:ribosomal protein l22; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4. 39 c3kkaD_ not modelled 10.1 23 PDB header:transferase Chain: D: PDB Molecule:ephrin type-a receptor 2; PDBTitle: co-crystal structure of the sam domains of epha1 and epha2 40 c2b59A_ not modelled 9.7 44 PDB header:hydrolase/structural protein Chain: A: PDB Molecule:cog1196: chromosome segregation atpases; PDBTitle: the type ii cohesin dockerin complex 41 d2c2la2 not modelled 9.7 17 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 42 d2bm3a1 not modelled 9.6 44 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III 43 c2kreA_ not modelled 9.6 17 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin conjugation factor e4 b; PDBTitle: solution structure of e4b/ufd2a u-box domain 44 c3o2kA_ not modelled 9.5 23 PDB header:transferase Chain: A: PDB Molecule:brevianamide f prenyltransferase; PDBTitle: crystal structure of brevianamide f prenyltransferase complexed with2 brevianamide f and dimethylallyl s-thiolodiphosphate 45 c2x0kB_ not modelled 9.4 11 PDB header:transferase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribf; PDBTitle: crystal structure of modular fad synthetase from2 corynebacterium ammoniagenes 46 c1m0kA_ not modelled 9.3 50 PDB header:ion transport Chain: A: PDB Molecule:bacteriorhodopsin; PDBTitle: bacteriorhodopsin k intermediate at 1.43 a resolution 47 d1m0ka_ not modelled 9.3 50 Fold:Family A G protein-coupled receptor-like Superfamily:Family A G protein-coupled receptor-like Family:Bacteriorhodopsin-like 48 c3fnkA_ not modelled 9.2 56 PDB header:structural protein Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b; PDBTitle: crystal structure of the second type ii cohesin module from2 the cellulosomal adaptor scaa scaffoldin of acetivibrio3 cellulolyticus 49 c2y9xC_ not modelled 9.1 14 PDB header:oxidoreductase Chain: C: PDB Molecule:polyphenol oxidase; PDBTitle: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in2 deoxy-form that contains additional unknown lectin-like subunit,3 with inhibitor tropolone 50 c2xfmA_ not modelled 8.6 33 PDB header:rna/protein Chain: A: PDB Molecule:piwi-like protein 1; PDBTitle: complex structure of the miwi paz domain bound to methylated single2 stranded rna 51 d1gwya_ not modelled 8.2 12 Fold:Cytolysin/lectin Superfamily:Cytolysin/lectin Family:Anemone pore-forming cytolysin 52 d2phcb2 not modelled 8.1 29 Fold:DCoH-like Superfamily:PH0987 N-terminal domain-like Family:PH0987 N-terminal domain-like 53 d1iyca_ not modelled 8.0 50 Fold:Invertebrate chitin-binding proteins Superfamily:Invertebrate chitin-binding proteins Family:Antifungal peptide scarabaecin 54 c3ghpA_ not modelled 7.9 56 PDB header:structural protein Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b; PDBTitle: structure of the second type ii cohesin module from the2 adaptor scaa scaffoldin of acetivibrio cellulolyticus3 (including long c-terminal linker) 55 d1v2ya_ not modelled 7.8 25 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 56 c3i4zA_ not modelled 7.6 23 PDB header:transferase Chain: A: PDB Molecule:tryptophan dimethylallyltransferase; PDBTitle: crystal structure of the dimethylallyl tryptophan synthase fgapt2 from2 aspergillus fumigatus 57 d2cqpa1 not modelled 7.6 9 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 58 c1t6zB_ not modelled 7.6 14 PDB header:transferase Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase; PDBTitle: crystal structure of riboflavin bound tm379 59 c2quoA_ not modelled 7.4 29 PDB header:toxin Chain: A: PDB Molecule:heat-labile enterotoxin b chain; PDBTitle: crystal structure of c terminal fragment of clostridium2 perfringens enterotoxin 60 c3htkC_ not modelled 7.3 17 PDB header:recombination/replication/ligase Chain: C: PDB Molecule:e3 sumo-protein ligase mms21; PDBTitle: crystal structure of mms21 and smc5 complex 61 d1p42a1 not modelled 6.9 10 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC 62 c3dclC_ not modelled 6.8 10 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:tm1086; PDBTitle: crystal structure of tm1086 63 d2gpia1 not modelled 6.8 27 Fold:Shew3726-like Superfamily:Shew3726-like Family:Shew3726-like 64 c2dbhA_ not modelled 6.6 56 PDB header:signaling protein Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily PDBTitle: solution structure of the carboxyl-terminal card-like2 domain in human tnfr-related death receptor-6 65 d1mxaa2 not modelled 6.5 33 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 66 d2hiya1 not modelled 6.4 20 Fold:SP0830-like Superfamily:SP0830-like Family:SP0830-like 67 c1zc1A_ not modelled 6.1 21 PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites 68 d2d9ra1 not modelled 5.9 25 Fold:Double-split beta-barrel Superfamily:AF2212/PG0164-like Family:PG0164-like 69 d1ogya1 not modelled 5.8 25 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain 70 d1c8sa_ not modelled 5.8 50 Fold:Family A G protein-coupled receptor-like Superfamily:Family A G protein-coupled receptor-like Family:Bacteriorhodopsin-like 71 c3vcbB_ not modelled 5.8 16 PDB header:viral protein Chain: B: PDB Molecule:rna-directed rna polymerase; PDBTitle: c425s mutant of the c-terminal cytoplasmic domain of non-structural2 protein 4 from mouse hepatitis virus a59 72 d2baya1 not modelled 5.8 40 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 73 d2p02a2 not modelled 5.6 40 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase 74 c1zbe1_ not modelled 5.4 23 PDB header:virus Chain: 1: PDB Molecule:coat protein vp1; PDBTitle: foot-and mouth disease virus serotype a1061 75 d2dira1 not modelled 5.4 15 Fold:THUMP domain Superfamily:THUMP domain-like Family:Minimal THUMP 76 d1x6ma_ not modelled 5.3 25 Fold:Mss4-like Superfamily:Mss4-like Family:Glutathione-dependent formaldehyde-activating enzyme, Gfa 77 d1usua_ not modelled 5.2 21 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Hsp90 middle domain 78 c2hz7A_ not modelled 5.2 17 PDB header:ligase Chain: A: PDB Molecule:glutaminyl-trna synthetase; PDBTitle: crystal structure of the glutaminyl-trna synthetase from2 deinococcus radiodurans 79 d1qm4a2 not modelled 5.1 40 Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0