Phyre 2 Results for Q46920

Email | l.a.kelley@imperial.ac.uk
Description | Q46920
Date | Thu Jan 5 12:35:53 GMT 2012
Unique Job ID | da6b85928219f7a4

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3bp1A_ |
|  | 100.0 | 64 | PDB header:oxidoreductase Chain: A: PDB Molecule:nadph-dependent 7-cyano-7-deazaguanine reductase; PDBTitle: crystal structure of putative 7-cyano-7-deazaguanine2 reductase quef from vibrio cholerae o1 biovar eltor
2 | c1wm9D_ |
|  | 97.8 | 19 | PDB header:hydrolase Chain: D: PDB Molecule:gtp cyclohydrolase i; PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8
3 | d1wura1 |
|  | 97.8 | 19 | Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I
4 | c1is7F_ |
|  | 95.5 | 20 | PDB header:hydrolase/protein binding Chain: F: PDB Molecule:gtp cyclohydrolase i; PDBTitle: crystal structure of rat gtpchi/gfrp stimulatory complex
5 | d1wpla_ |
|  | 95.5 | 20 | Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I
6 | d1a8ra_ |
|  | 95.2 | 19 | Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:GTP cyclohydrolase I
7 | c1rg9D_ |
|  | 77.9 | 16 | PDB header:transferase Chain: D: PDB Molecule:s-adenosylmethionine synthetase; PDBTitle: s-adenosylmethionine synthetase complexed with sam and ppnp
8 | c3imlB_ |
|  | 60.2 | 18 | PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthetase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from burkholderia2 pseudomallei
9 | c2obvA_ |
|  | 52.0 | 16 | PDB header:transferase Chain: A: PDB Molecule:s-adenosylmethionine synthetase isoform type-1; PDBTitle: crystal structure of the human s-adenosylmethionine synthetase 1 in2 complex with the product
10 | c2f42A_ |
|  | 49.5 | 19 | PDB header:chaperone Chain: A: PDB Molecule:stip1 homology and u-box containing protein 1; PDBTitle: dimerization and u-box domains of zebrafish c-terminal of hsp702 interacting protein
11 | c3hjhA_ |
|  | 48.9 | 53 | PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair-coupling factor; PDBTitle: a rigid n-terminal clamp restrains the motor domains of the bacterial2 transcription-repair coupling factor
12 | d3bz6a2 |
|  | 32.7 | 30 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PSPTO2686-like
13 | c3pg6D_ |
|  | 32.6 | 25 | PDB header:ligase Chain: D: PDB Molecule:e3 ubiquitin-protein ligase dtx3l; PDBTitle: the carboxyl terminal domain of human deltex 3-like
14 | d2b2na1 |
|  | 31.1 | 54 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain
15 | d1j6ra_ |
|  | 31.0 | 27 | Fold:Methionine synthase activation domain-like Superfamily:Methionine synthase activation domain-like Family:Hypothetical protein TM0269
16 | d2eyqa4 |
|  | 30.7 | 54 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain
17 | d2o4ta1 |
|  | 29.2 | 13 | Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like
18 | c3gzfD_ |
|  | 28.7 | 18 | PDB header:viral protein Chain: D: PDB Molecule:replicase polyprotein 1ab; PDBTitle: structure of the c-terminal domain of nsp4 from feline coronavirus
19 | c3rv2B_ |
|  | 27.0 | 18 | PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from2 mycobacterium marinum
20 | c3fpnB_ |
|  | 26.2 | 31 | PDB header:dna binding protein Chain: B: PDB Molecule:geobacillus stearothermophilus uvrb interaction PDBTitle: crystal structure of uvra-uvrb interaction domains
21 | c3ty1B_ |
| not modelled | 19.7 | 16 | PDB header:isomerase Chain: B: PDB Molecule:hypothetical aldose 1-epimerase; PDBTitle: crystal structure of a hypothetical aldose 1-epimerase (kpn_04629)2 from klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.90 a3 resolution
22 | d1nb9a_ |
| not modelled | 16.4 | 10 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:ATP-dependent riboflavin kinase-like
23 | d2pvaa_ |
| not modelled | 15.6 | 18 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:Penicillin V acylase
24 | d1t5la1 |
| not modelled | 15.5 | 31 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain
25 | c2hezB_ |
| not modelled | 15.3 | 21 | PDB header:hydrolase Chain: B: PDB Molecule:bile salt hydrolase; PDBTitle: bifidobacterium longum bile salt hydrolase
26 | c3bz6A_ |
| not modelled | 15.1 | 30 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0502 protein pspto_2686; PDBTitle: crystal structure of a conserved protein of unknown function from2 pseudomonas syringae pv. tomato str. dc3000
27 | c3op1A_ |
| not modelled | 14.5 | 21 | PDB header:transferase Chain: A: PDB Molecule:macrolide-efflux protein; PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae
28 | d1n08a_ |
| not modelled | 13.9 | 10 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin kinase-like Family:ATP-dependent riboflavin kinase-like
29 | c3bnwA_ |
| not modelled | 12.9 | 16 | PDB header:transferase Chain: A: PDB Molecule:riboflavin kinase, putative; PDBTitle: crystal structure of riboflavin kinase from trypanosoma brucei
30 | d1tyja1 |
| not modelled | 12.6 | 25 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III
31 | d1zv9a1 |
| not modelled | 12.4 | 32 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III
32 | c3izcW_ |
| not modelled | 12.2 | 22 | PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
33 | c2eyqA_ |
| not modelled | 11.8 | 54 | PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor
34 | c2im9A_ |
| not modelled | 11.2 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein lpg0564 from legionella pneumophila str.2 philadelphia 1, pfam duf1460
35 | d2im9a1 |
| not modelled | 11.2 | 19 | Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Lpg0564-like
36 | c3h8mB_ |
| not modelled | 11.0 | 19 | PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 7; PDBTitle: sam domain of human ephrin type-a receptor 7 (epha7)
37 | c3lhiA_ |
| not modelled | 10.5 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:putative 6-phosphogluconolactonase; PDBTitle: crystal structure of putative 6-2 phosphogluconolactonase(yp_207848.1) from neisseria3 gonorrhoeae fa 1090 at 1.33 a resolution
38 | c4a1dM_ |
| not modelled | 10.3 | 26 | PDB header:ribosome Chain: M: PDB Molecule:ribosomal protein l22; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4.
39 | c3kkaD_ |
| not modelled | 10.1 | 23 | PDB header:transferase Chain: D: PDB Molecule:ephrin type-a receptor 2; PDBTitle: co-crystal structure of the sam domains of epha1 and epha2
40 | c2b59A_ |
| not modelled | 9.7 | 44 | PDB header:hydrolase/structural protein Chain: A: PDB Molecule:cog1196: chromosome segregation atpases; PDBTitle: the type ii cohesin dockerin complex
41 | d2c2la2 |
| not modelled | 9.7 | 17 | Fold:RING/U-box Superfamily:RING/U-box Family:U-box
42 | d2bm3a1 |
| not modelled | 9.6 | 44 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family III
43 | c2kreA_ |
| not modelled | 9.6 | 17 | PDB header:protein binding Chain: A: PDB Molecule:ubiquitin conjugation factor e4 b; PDBTitle: solution structure of e4b/ufd2a u-box domain
44 | c3o2kA_ |
| not modelled | 9.5 | 23 | PDB header:transferase Chain: A: PDB Molecule:brevianamide f prenyltransferase; PDBTitle: crystal structure of brevianamide f prenyltransferase complexed with2 brevianamide f and dimethylallyl s-thiolodiphosphate
45 | c2x0kB_ |
| not modelled | 9.4 | 11 | PDB header:transferase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribf; PDBTitle: crystal structure of modular fad synthetase from2 corynebacterium ammoniagenes
46 | c1m0kA_ |
| not modelled | 9.3 | 50 | PDB header:ion transport Chain: A: PDB Molecule:bacteriorhodopsin; PDBTitle: bacteriorhodopsin k intermediate at 1.43 a resolution
47 | d1m0ka_ |
| not modelled | 9.3 | 50 | Fold:Family A G protein-coupled receptor-like Superfamily:Family A G protein-coupled receptor-like Family:Bacteriorhodopsin-like
48 | c3fnkA_ |
| not modelled | 9.2 | 56 | PDB header:structural protein Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b; PDBTitle: crystal structure of the second type ii cohesin module from2 the cellulosomal adaptor scaa scaffoldin of acetivibrio3 cellulolyticus
49 | c2y9xC_ |
| not modelled | 9.1 | 14 | PDB header:oxidoreductase Chain: C: PDB Molecule:polyphenol oxidase; PDBTitle: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in2 deoxy-form that contains additional unknown lectin-like subunit,3 with inhibitor tropolone
50 | c2xfmA_ |
| not modelled | 8.6 | 33 | PDB header:rna/protein Chain: A: PDB Molecule:piwi-like protein 1; PDBTitle: complex structure of the miwi paz domain bound to methylated single2 stranded rna
51 | d1gwya_ |
| not modelled | 8.2 | 12 | Fold:Cytolysin/lectin Superfamily:Cytolysin/lectin Family:Anemone pore-forming cytolysin
52 | d2phcb2 |
| not modelled | 8.1 | 29 | Fold:DCoH-like Superfamily:PH0987 N-terminal domain-like Family:PH0987 N-terminal domain-like
53 | d1iyca_ |
| not modelled | 8.0 | 50 | Fold:Invertebrate chitin-binding proteins Superfamily:Invertebrate chitin-binding proteins Family:Antifungal peptide scarabaecin
54 | c3ghpA_ |
| not modelled | 7.9 | 56 | PDB header:structural protein Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b; PDBTitle: structure of the second type ii cohesin module from the2 adaptor scaa scaffoldin of acetivibrio cellulolyticus3 (including long c-terminal linker)
55 | d1v2ya_ |
| not modelled | 7.8 | 25 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related
56 | c3i4zA_ |
| not modelled | 7.6 | 23 | PDB header:transferase Chain: A: PDB Molecule:tryptophan dimethylallyltransferase; PDBTitle: crystal structure of the dimethylallyl tryptophan synthase fgapt2 from2 aspergillus fumigatus
57 | d2cqpa1 |
| not modelled | 7.6 | 9 | Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD
58 | c1t6zB_ |
| not modelled | 7.6 | 14 | PDB header:transferase Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase; PDBTitle: crystal structure of riboflavin bound tm379
59 | c2quoA_ |
| not modelled | 7.4 | 29 | PDB header:toxin Chain: A: PDB Molecule:heat-labile enterotoxin b chain; PDBTitle: crystal structure of c terminal fragment of clostridium2 perfringens enterotoxin
60 | c3htkC_ |
| not modelled | 7.3 | 17 | PDB header:recombination/replication/ligase Chain: C: PDB Molecule:e3 sumo-protein ligase mms21; PDBTitle: crystal structure of mms21 and smc5 complex
61 | d1p42a1 |
| not modelled | 6.9 | 10 | Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
62 | c3dclC_ |
| not modelled | 6.8 | 10 | PDB header:structural genomics, unknown function Chain: C: PDB Molecule:tm1086; PDBTitle: crystal structure of tm1086
63 | d2gpia1 |
| not modelled | 6.8 | 27 | Fold:Shew3726-like Superfamily:Shew3726-like Family:Shew3726-like
64 | c2dbhA_ |
| not modelled | 6.6 | 56 | PDB header:signaling protein Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily PDBTitle: solution structure of the carboxyl-terminal card-like2 domain in human tnfr-related death receptor-6
65 | d1mxaa2 |
| not modelled | 6.5 | 33 | Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase
66 | d2hiya1 |
| not modelled | 6.4 | 20 | Fold:SP0830-like Superfamily:SP0830-like Family:SP0830-like
67 | c1zc1A_ |
| not modelled | 6.1 | 21 | PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites
68 | d2d9ra1 |
| not modelled | 5.9 | 25 | Fold:Double-split beta-barrel Superfamily:AF2212/PG0164-like Family:PG0164-like
69 | d1ogya1 |
| not modelled | 5.8 | 25 | Fold:Double psi beta-barrel Superfamily:ADC-like Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
70 | d1c8sa_ |
| not modelled | 5.8 | 50 | Fold:Family A G protein-coupled receptor-like Superfamily:Family A G protein-coupled receptor-like Family:Bacteriorhodopsin-like
71 | c3vcbB_ |
| not modelled | 5.8 | 16 | PDB header:viral protein Chain: B: PDB Molecule:rna-directed rna polymerase; PDBTitle: c425s mutant of the c-terminal cytoplasmic domain of non-structural2 protein 4 from mouse hepatitis virus a59
72 | d2baya1 |
| not modelled | 5.8 | 40 | Fold:RING/U-box Superfamily:RING/U-box Family:U-box
73 | d2p02a2 |
| not modelled | 5.6 | 40 | Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase
74 | c1zbe1_ |
| not modelled | 5.4 | 23 | PDB header:virus Chain: 1: PDB Molecule:coat protein vp1; PDBTitle: foot-and mouth disease virus serotype a1061
75 | d2dira1 |
| not modelled | 5.4 | 15 | Fold:THUMP domain Superfamily:THUMP domain-like Family:Minimal THUMP
76 | d1x6ma_ |
| not modelled | 5.3 | 25 | Fold:Mss4-like Superfamily:Mss4-like Family:Glutathione-dependent formaldehyde-activating enzyme, Gfa
77 | d1usua_ |
| not modelled | 5.2 | 21 | Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Hsp90 middle domain
78 | c2hz7A_ |
| not modelled | 5.2 | 17 | PDB header:ligase Chain: A: PDB Molecule:glutaminyl-trna synthetase; PDBTitle: crystal structure of the glutaminyl-trna synthetase from2 deinococcus radiodurans
79 | d1qm4a2 |
| not modelled | 5.1 | 40 | Fold:S-adenosylmethionine synthetase Superfamily:S-adenosylmethionine synthetase Family:S-adenosylmethionine synthetase