Phyre 2 alignment of Q46920 with d1p42a1

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Job Description | Q46920
Confidence | 6.92% | Date | Thu Jan 5 12:35:53 GMT 2012
Rank | 61 | Aligned Residues | 31
% Identity | 10% | Template | d1p42a1
SCOP info | Ribosomal protein S5 domain 2-like | Ribosomal protein S5 domain 2-like | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
Resolution | 2.00

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 129 | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | V | A | L | Y | R | L | D | E | L | E | G | Q | P | I | G | H | F | N | G | T | C | I | D | D | Q | D | I | T | I | D | N | Y | E | F | T
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Q | R | I | K | T | V | E | H | I | . | . | . | . | L | S | V | L | H | L | L | E | I | T | N | V | T | I | E | V | I | G | N | E | I | P
Template Known Secondary structure |  |  |  |  | B |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  | T | T |  |  | S |  |  |  |  |  |  | S | S | B |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 72 | . | . | . | . | . | . | . | 80 |  |  |  |  | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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