Phyre 2 alignment of Q46920 with c2k48A_

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Job Description | Q46920
Confidence | 4.91% | Date | Thu Jan 5 12:35:53 GMT 2012
Rank | 81 | Aligned Residues | 23
% Identity | 48% | Template | c2k48A_
PDB info | PDB header:viral protein | Chain: A: PDB Molecule:nucleoprotein; | PDBTitle: nmr structure of the n-terminal coiled coil domain of the2 andes hantavirus nucleocapsid protein
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 32 | . | . | . | . | . | . | . | 40 | . | . | . | . | . |  | . | . | . | . | 50 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | V | P | R | S | L | N | R | D | P | L | G | L | K | . | A | D | N | L | P | F | H | G | T | D | I | W | T
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | I | P | N | P | L | . | . | . | . | L | G | L | D | S | T | E | N | L | Y | F | Q | G | I | D | P | F | T
Template Known Secondary structure |  |  |  |  |  | S |  | . | . | . | . |  | S |  |  |  |  |  |  |  |  |  |  |  |  |  | S |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 10 | . | . | . | . | . |  |  |  |  | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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