Phyre 2 alignment of Q46920 with c2kreA_

Return to main results | Retrieve Phyre Job Id

Job Description | Q46920
Confidence | 9.56% | Date | Thu Jan 5 12:35:53 GMT 2012
Rank | 43 | Aligned Residues | 41
% Identity | 17% | Template | c2kreA_
PDB info | PDB header:protein binding | Chain: A: PDB Molecule:ubiquitin conjugation factor e4 b; | PDBTitle: solution structure of e4b/ufd2a u-box domain
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 179 | 180 | . | . | . | . | . | . | . | . | . |  | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | E | T | L | V | S | H | L | L | K | S | N | . | C | L | I | T | H | Q | P | D | W | G | S | L | Q | I | Q | Y | R | G | R | Q | I | D | R | E | K | L | L | R | Y | L | V | S | F | R | H | H | N
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | S | I | I | L | R | H | L | L | N | S | P | T | D | P | F | N | R | Q | T | L | . | . | . | . | . | . | . | T | E | S | M | L | E | P | V | P | E | L | K | E | Q | I | Q | A | W | M | R | E | K
Template Known Secondary structure |  |  |  |  |  |  |  | T | T | S |  | S | B |  | S | S | S |  |  | B |  | . | . | . | . | . | . | . |  | T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 1256 | . | . | . | 1260 | . | . | . | . | . | . | . | . | . | 1270 | . | . | . | . | . |  |  |  |  |  |  |  | . | . | . | . | 1280 | . | . | . | . | . | . | . | . | . | 1290 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions