Phyre 2 alignment of Q46920 with d1j6ra_

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Job Description | Q46920
Confidence | 30.95% | Date | Thu Jan 5 12:35:53 GMT 2012
Rank | 15 | Aligned Residues | 56
% Identity | 27% | Template | d1j6ra_
SCOP info | Methionine synthase activation domain-like | Methionine synthase activation domain-like | Hypothetical protein TM0269
Resolution | 2.30

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 209 | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 |  |  |  | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Q | I | D | R | E | K | L | L | R | Y | L | V | S | F | R | H | H | N | E | F | H | E | . | . | . | Q | C | V | E | R | I | F | N | D | L | L | R | F | C | Q | P | E | K | L | S | V | Y | A | R | Y | T | R | R | G | G | L | D | I | N | P | W | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | I | P | D | N | V | L | K | A | K | . | L | G | F | G | G | A | E | E | I | P | E | E | F | R | K | T | V | N | R | A | Y | E | E | L | L | D | A | A | K | P | V | V | L | . | . | W | R | D | F | E | V | D | G | S | L | S | F | D | D | M | R
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . | T | T |  | S | S |  | S | S |  |  | G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  | T | T |  | S | B |  | S | S |  | B
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 14 | . | . | . | . | . | 20 | . | . | . |  | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . |  |  | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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