Phyre 2 alignment of Q46920 with c1zbe1_

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Job Description | Q46920
Confidence | 5.41% | Date | Thu Jan 5 12:35:53 GMT 2012
Rank | 74 | Aligned Residues | 26
% Identity | 23% | Template | c1zbe1_
PDB info | PDB header:virus | Chain: 1: PDB Molecule:coat protein vp1; | PDBTitle: foot-and mouth disease virus serotype a1061
Resolution | 3.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 59 | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . |  |  |  |  | . | . | . | . | . | . | 80 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | Y | E | L | S | W | L | N | A | K | G | L | P | Q | V | . | . | . | . | A | V | G | H | V | E | L | D | Y | T | S | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | P | E | A | A | L | S | N | T | S | N | . | P | T | A | Y | N | K | A | P | F | T | R | L | A | L | P | Y | T | A | P
Template Known Secondary structure |  |  |  | G | G | G | G | G |  | T | T | S | . | S |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 93 | . | . | . | . | . | . | 100 | . | . | . |  | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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