Email l.a.kelley@imperial.ac.uk Description P45577 Date Thu Jan 5 12:03:23 GMT 2012 Unique Job ID d9e5a56f962040e2

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1dvoa_ 100.0 26 Fold:FinO-like Superfamily:FinO-like Family:FinO-like 2 d2hxja1 100.0 21 Fold:FinO-like Superfamily:FinO-like Family:FinO-like 3 c2hxjF_ 100.0 21 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein of unknown function nmb1681 from2 neisseria meningitidis mc58, possible nucleic acid binding protein 4 c2e70A_ 91.3 26 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 5 c3qiiA_ 88.1 20 PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 6 c3p8dB_ 82.0 21 PDB header:protein binding Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72; PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form) 7 c2in0A_ 74.3 20 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease pi-mtui; PDBTitle: crystal structure of mtu reca intein splicing domain 8 c2k8iA_ 72.4 20 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: solution structure of e.coli slyd 9 c2equA_ 70.9 20 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 10 c2qqsB_ 67.8 13 PDB header:oxidoreductase Chain: B: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide 11 d1nxza1 66.8 31 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 12 c1zd7B_ 61.7 11 PDB header:transferase Chain: B: PDB Molecule:dna polymerase iii alpha subunit; PDBTitle: 1.7 angstrom crystal structure of post-splicing form of a dnae intein2 from synechocystis sp. pcc 6803 13 c3dlmA_ 61.4 21 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb1; PDBTitle: crystal structure of tudor domain of human histone-lysine n-2 methyltransferase setdb1 14 d2ix0a3 60.8 32 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 15 d1kk1a2 59.6 19 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 16 c2kfwA_ 58.9 14 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase PDBTitle: solution structure of full-length slyd from e.coli 17 c3d0fA_ 57.8 22 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca; PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718 18 d1s0ua2 56.4 20 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 19 d2qn6a2 55.8 21 Fold:Elongation factor/aminomethyltransferase common domain Superfamily:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain Family:EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 20 d3bzka4 55.0 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 21 d1sroa_ not modelled 54.9 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 22 c2xdpA_ not modelled 51.1 13 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 4c; PDBTitle: crystal structure of the tudor domain of human jmjd2c 23 d1at0a_ not modelled 48.5 18 Fold:Hedgehog/intein (Hint) domain Superfamily:Hedgehog/intein (Hint) domain Family:Hedgehog C-terminal (Hog) autoprocessing domain 24 c2k52A_ not modelled 47.3 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1198; PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b 25 d1kl9a2 not modelled 44.0 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 26 d2do3a1 not modelled 43.2 22 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 27 d1ib8a1 not modelled 40.9 24 Fold:Sm-like fold Superfamily:YhbC-like, C-terminal domain Family:YhbC-like, C-terminal domain 28 d1biaa2 not modelled 38.6 15 Fold:SH3-like barrel Superfamily:C-terminal domain of transcriptional repressors Family:Biotin repressor (BirA) 29 c2kvqG_ not modelled 36.9 18 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 30 c2jvvA_ not modelled 36.9 18 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 31 d1vqoq1 not modelled 36.7 29 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 32 d1kk8a1 not modelled 35.7 13 Fold:SH3-like barrel Superfamily:Myosin S1 fragment, N-terminal domain Family:Myosin S1 fragment, N-terminal domain 33 d1whma_ not modelled 33.5 26 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 34 c2khiA_ not modelled 32.8 20 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1 35 c2keqA_ not modelled 31.8 9 PDB header:splicing Chain: A: PDB Molecule:dna polymerase iii alpha subunit, nucleic acid PDBTitle: solution structure of dnae intein from nostoc punctiforme 36 c2khjA_ not modelled 31.8 24 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 37 c3p8bB_ not modelled 30.0 25 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 38 d1nppa2 not modelled 29.5 21 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 39 c2ix1A_ not modelled 28.4 33 PDB header:hydrolase Chain: A: PDB Molecule:exoribonuclease 2; PDBTitle: rnase ii d209n mutant 40 c2hbpA_ not modelled 28.3 24 PDB header:endocytosis, protein binding Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1; PDBTitle: solution structure of sla1 homology domain 1 41 c3q9qB_ not modelled 26.6 19 PDB header:chaperone Chain: B: PDB Molecule:heat shock protein beta-1; PDBTitle: hspb1 fragment second crystal form 42 d1wgka_ not modelled 26.6 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 43 c1ssfA_ not modelled 26.4 9 PDB header:cell cycle Chain: A: PDB Molecule:transformation related protein 53 binding PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617) 44 c1zeqX_ not modelled 25.9 17 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 45 c2egwB_ not modelled 25.5 9 PDB header:rna methyltransferase Chain: B: PDB Molecule:upf0088 protein aq_165; PDBTitle: crystal structure of rrna methyltransferase with sah ligand 46 c2ckkA_ not modelled 25.1 16 PDB header:nuclear protein Chain: A: PDB Molecule:kin17; PDBTitle: high resolution crystal structure of the human kin172 c-terminal domain containing a kow motif3 kin17. 47 c2cghB_ not modelled 24.9 12 PDB header:ligase Chain: B: PDB Molecule:biotin ligase; PDBTitle: crystal structure of biotin ligase from mycobacterium2 tuberculosis 48 c1vhkA_ not modelled 24.9 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yqeu; PDBTitle: crystal structure of an hypothetical protein 49 c2imzA_ not modelled 23.9 18 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease pi-mtui; PDBTitle: crystal structure of mtu reca intein splicing domain 50 d1nz9a_ not modelled 23.4 29 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 51 c2eayB_ not modelled 23.0 21 PDB header:ligase Chain: B: PDB Molecule:biotin [acetyl-coa-carboxylase] ligase; PDBTitle: crystal structure of biotin protein ligase from aquifex2 aeolicus 52 d1mi8a_ not modelled 23.0 16 Fold:Hedgehog/intein (Hint) domain Superfamily:Hedgehog/intein (Hint) domain Family:Intein (protein splicing domain) 53 c1kl9A_ not modelled 21.3 26 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 2 subunit 1; PDBTitle: crystal structure of the n-terminal segment of human eukaryotic2 initiation factor 2alpha 54 d2ba0a1 not modelled 20.9 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 55 c3kw2A_ not modelled 20.8 18 PDB header:transferase Chain: A: PDB Molecule:probable r-rna methyltransferase; PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis 56 c1ywuA_ not modelled 20.3 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pa4608; PDBTitle: solution nmr structure of pseudomonas aeruginosa protein pa4608.2 northeast structural genomics target pat7 57 d1ywua1 not modelled 20.3 9 Fold:Split barrel-like Superfamily:PilZ domain-like Family:PilZ domain 58 d2rdea1 not modelled 20.1 17 Fold:Split barrel-like Superfamily:PilZ domain-like Family:PilZ domain 59 d2z0sa1 not modelled 20.0 10 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 60 c2wj7D_ not modelled 19.8 14 PDB header:chaperone Chain: D: PDB Molecule:alpha-crystallin b chain; PDBTitle: human alphab crystallin 61 d2i5ua1 not modelled 19.8 10 Fold:DnaD domain-like Superfamily:DnaD domain-like Family:DnaD domain 62 c2kr7A_ not modelled 19.8 16 PDB header:isomerase Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase slyd; PDBTitle: solution structure of helicobacter pylori slyd 63 d1vhka1 not modelled 19.6 13 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 64 d1q46a2 not modelled 18.9 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 65 d1alla_ not modelled 18.8 26 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 66 d2je6i1 not modelled 18.3 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 67 c2d7gD_ not modelled 18.1 15 PDB header:hydrolase Chain: D: PDB Molecule:primosomal protein n; PDBTitle: crystal structure of the aa complex of the n-terminal2 domain of pria 68 c2l1tA_ not modelled 17.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of the n-terminal domain of np_954075.1 69 c2ej9A_ not modelled 17.6 21 PDB header:ligase Chain: A: PDB Molecule:putative biotin ligase; PDBTitle: crystal structure of biotin protein ligase from2 methanococcus jannaschii 70 c2ewnA_ not modelled 17.5 14 PDB header:ligase, transcription Chain: A: PDB Molecule:bira bifunctional protein; PDBTitle: ecoli biotin repressor with co-repressor analog 71 c2kq6A_ not modelled 17.2 26 PDB header:transport protein Chain: A: PDB Molecule:polycystin-2; PDBTitle: the structure of the ef-hand domain of polycystin-2 suggests a2 mechanism for ca2+-dependent regulation of polycystin-2 channel3 activity 72 d2nn6h1 not modelled 16.2 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 73 d1go3e1 not modelled 16.1 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 74 c1xniI_ not modelled 15.8 13 PDB header:cell cycle Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1; PDBTitle: tandem tudor domain of 53bp1 75 c2zrrA_ not modelled 15.3 25 PDB header:antimicrobial protein Chain: A: PDB Molecule:mundticin ks immunity protein; PDBTitle: crystal structure of an immunity protein that contributes2 to the self-protection of bacteriocin-producing3 enterococcus mundtii 15-1a 76 d1ixda_ not modelled 15.0 21 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 77 c1i84V_ not modelled 14.9 23 PDB header:contractile protein Chain: V: PDB Molecule:smooth muscle myosin heavy chain; PDBTitle: cryo-em structure of the heavy meromyosin subfragment of2 chicken gizzard smooth muscle myosin with regulatory light3 chain in the dephosphorylated state. only c alphas4 provided for regulatory light chain. only backbone atoms5 provided for s2 fragment. 78 d1b33a_ not modelled 14.8 22 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 79 c2jkuA_ not modelled 14.6 18 PDB header:ligase Chain: A: PDB Molecule:propionyl-coa carboxylase alpha chain, PDBTitle: crystal structure of the n-terminal region of the biotin2 acceptor domain of human propionyl-coa carboxylase 80 c3a8jF_ not modelled 14.6 0 PDB header:transferase/transport protein Chain: F: PDB Molecule:glycine cleavage system h protein; PDBTitle: crystal structure of et-ehred complex 81 c3mxuA_ not modelled 14.5 31 PDB header:oxidoreductase Chain: A: PDB Molecule:glycine cleavage system h protein; PDBTitle: crystal structure of glycine cleavage system protein h from bartonella2 henselae 82 c3iftA_ not modelled 14.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:glycine cleavage system h protein; PDBTitle: crystal structure of glycine cleavage system protein h from2 mycobacterium tuberculosis, using x-rays from the compact light3 source. 83 d1cpcb_ not modelled 13.8 22 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 84 c3cgnA_ not modelled 13.6 22 PDB header:isomerase Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase; PDBTitle: crystal structure of thermophilic slyd 85 d1br2a1 not modelled 13.3 25 Fold:SH3-like barrel Superfamily:Myosin S1 fragment, N-terminal domain Family:Myosin S1 fragment, N-terminal domain 86 d2ghra1 not modelled 13.2 42 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:HTS-like 87 c1v1hB_ not modelled 13.0 19 PDB header:adenovirus Chain: B: PDB Molecule:fibritin, fiber protein; PDBTitle: adenovirus fibre shaft sequence n-terminally fused to the2 bacteriophage t4 fibritin foldon trimerisation motif with3 a short linker 88 d1gmea_ not modelled 12.8 32 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:HSP20 89 d1kn1a_ not modelled 12.4 26 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 90 c2qjlA_ not modelled 12.2 16 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin-related modifier 1; PDBTitle: crystal structure of urm1 91 c2zkrq_ not modelled 12.0 21 PDB header:ribosomal protein/rna Chain: Q: PDB Molecule:rna expansion segment es31 part ii; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 92 c3aabA_ not modelled 11.9 23 PDB header:chaperone Chain: A: PDB Molecule:putative uncharacterized protein st1653; PDBTitle: small heat shock protein hsp14.0 with the mutations of i120f and i122f2 in the form i crystal 93 c1br4E_ not modelled 11.8 23 PDB header:muscle protein Chain: E: PDB Molecule:myosin; PDBTitle: smooth muscle myosin motor domain-essential light chain2 complex with mgadp.bef3 bound at the active site 94 d1hpca_ not modelled 11.7 15 Fold:Barrel-sandwich hybrid Superfamily:Single hybrid motif Family:Biotinyl/lipoyl-carrier proteins and domains 95 d1xo3a_ not modelled 11.6 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:C9orf74 homolog 96 c1vdeA_ not modelled 11.3 20 PDB header:endonuclease Chain: A: PDB Molecule:pi-scei; PDBTitle: pi-scei, a homing endonuclease with protein splicing2 activity 97 c1vftA_ not modelled 11.1 31 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of l-cycloserine-bound form of alanine2 racemase from d-cycloserine-producing streptomyces3 lavendulae 98 d1dq3a1 not modelled 11.0 11 Fold:Hedgehog/intein (Hint) domain Superfamily:Hedgehog/intein (Hint) domain Family:Intein (protein splicing domain) 99 d2h50a1 not modelled 10.8 32 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:HSP20