Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP50456
DateThu Jan 5 12:04:43 GMT 2012
Unique Job IDd92874c542ac9979

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1z05A_
Top template information
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
Confidence and coverage
Confidence:100.0% Coverage: 97%
395 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV
Secondary structure 



















SS confidence 



























































Disorder  ?????????






























???
















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   .........70.........80.........90.........100.........110.........120
Sequence  QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD
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Disorder 



??????????













































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   .........130.........140.........150.........160.........170.........180
Sequence  DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE
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Disorder 



















??





































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   .........190.........200.........210.........220.........230.........240
Sequence  ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS
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   .........250.........260.........270.........280.........290.........300
Sequence  SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL
Secondary structure 






























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Disorder 







































?????????????






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   .........310.........320.........330.........340.........350.........360
Sequence  CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR
Secondary structure 







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   .........370.........380.........390.........400......
Sequence  QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG
Secondary structure 

















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Disorder 










































???
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1z05 chain A

3D model

Region: 11 - 406
Aligned: 395
Modelled: 396
Confidence: 100.0%
Identity: 45%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.

Phyre2

PDB 1z6r chain C

3D model

Region: 12 - 406
Aligned: 382
Modelled: 395
Confidence: 100.0%
Identity: 98%
PDB header:transcription
Chain: C: PDB Molecule:mlc protein;
PDBTitle: crystal structure of mlc from escherichia coli

Phyre2

PDB 2hoe chain A

3D model

Region: 20 - 395
Aligned: 344
Modelled: 355
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:n-acetylglucosamine kinase;
PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution

Phyre2

PDB 3mcp chain A

3D model

Region: 80 - 398
Aligned: 299
Modelled: 319
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution

Phyre2

PDB 2qm1 chain D

3D model

Region: 81 - 395
Aligned: 315
Modelled: 312
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: D: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase from enterococcus faecalis

Phyre2

PDB 3vgk chain B

3D model

Region: 85 - 393
Aligned: 302
Modelled: 309
Confidence: 100.0%
Identity: 25%
PDB header:transferase
Chain: B: PDB Molecule:glucokinase;
PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus

Phyre2

PDB 3r8e chain A

3D model

Region: 85 - 391
Aligned: 297
Modelled: 307
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:hypothetical sugar kinase;
PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution

Phyre2

PDB 2ap1 chain A

3D model

Region: 85 - 391
Aligned: 291
Modelled: 298
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:putative regulator protein;
PDBTitle: crystal structure of the putative regulatory protein

Phyre2

PDB 2aa4 chain B

3D model

Region: 87 - 393
Aligned: 285
Modelled: 297
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: B: PDB Molecule:putative n-acetylmannosamine kinase;
PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium

Phyre2

PDB 3eo3 chain B

3D model

Region: 86 - 393
Aligned: 279
Modelled: 285
Confidence: 100.0%
Identity: 24%
PDB header:isomerase, transferase
Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n-
PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein

Phyre2

PDB 3htv chain A

3D model

Region: 82 - 397
Aligned: 276
Modelled: 285
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:d-allose kinase;
PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution

Phyre2

PDB 2gup chain A

3D model

Region: 87 - 393
Aligned: 280
Modelled: 307
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:rok family protein;
PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose

Phyre2

PDB 1xc3 chain A

3D model

Region: 85 - 394
Aligned: 276
Modelled: 287
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:putative fructokinase;
PDBTitle: structure of a putative fructokinase from bacillus subtilis

Phyre2

PDB 1sz2 chain A domain 1

3D model

Region: 86 - 399
Aligned: 299
Modelled: 309
Confidence: 100.0%
Identity: 14%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Glucokinase

Phyre2

PDB 1z6r chain A domain 3

3D model

Region: 211 - 406
Aligned: 196
Modelled: 196
Confidence: 100.0%
Identity: 97%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: ROK

Phyre2

PDB 1z05 chain A domain 2

3D model

Region: 211 - 406
Aligned: 196
Modelled: 196
Confidence: 100.0%
Identity: 42%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: ROK

Phyre2

PDB 1woq chain B

3D model

Region: 87 - 391
Aligned: 243
Modelled: 261
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase;
PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution

Phyre2

PDB 2q2r chain A

3D model

Region: 80 - 394
Aligned: 304
Modelled: 315
Confidence: 100.0%
Identity: 11%
PDB header:transferase
Chain: A: PDB Molecule:glucokinase 1, putative;
PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp

Phyre2

PDB 2ch5 chain D

3D model

Region: 84 - 399
Aligned: 297
Modelled: 316
Confidence: 100.0%
Identity: 13%
PDB header:transferase
Chain: D: PDB Molecule:nagk protein;
PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine

Phyre2

PDB 3lm2 chain B

3D model

Region: 86 - 393
Aligned: 215
Modelled: 252
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: B: PDB Molecule:putative kinase;
PDBTitle: crystal structure of putative kinase. (17743352) from agrobacterium2 tumefaciens str. c58 (dupont) at 1.70 a resolution

Phyre2
1

c1z05A_
2

c1z6rC_
3

c2hoeA_
4

c3mcpA_
5

c2qm1D_
6

c3vgkB_
7

c3r8eA_
8

c2ap1A_
9

c2aa4B_
10

c3eo3B_
11

c3htvA_
12

c2gupA_
13

c1xc3A_
14

d1sz2a1
15

d1z6ra3
16

d1z05a2
17

c1woqB_
18

c2q2rA_
19

c2ch5D_
20

c3lm2B_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1z05A_



100.0 45 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
2c1z6rC_



100.0 98 PDB header:transcription
Chain: C: PDB Molecule:mlc protein;
PDBTitle: crystal structure of mlc from escherichia coli
3c2hoeA_



100.0 23 PDB header:transferase
Chain: A: PDB Molecule:n-acetylglucosamine kinase;
PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution
4c3mcpA_



100.0 18 PDB header:transferase
Chain: A: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution
5c2qm1D_



100.0 24 PDB header:transferase
Chain: D: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase from enterococcus faecalis
6c3vgkB_



100.0 25 PDB header:transferase
Chain: B: PDB Molecule:glucokinase;
PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus
7c3r8eA_



100.0 19 PDB header:transferase
Chain: A: PDB Molecule:hypothetical sugar kinase;
PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution
8c2ap1A_



100.0 22 PDB header:transferase
Chain: A: PDB Molecule:putative regulator protein;
PDBTitle: crystal structure of the putative regulatory protein
9c2aa4B_



100.0 24 PDB header:transferase
Chain: B: PDB Molecule:putative n-acetylmannosamine kinase;
PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium
10c3eo3B_



100.0 24 PDB header:isomerase, transferase
Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n-
PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein
11c3htvA_



100.0 15 PDB header:transferase
Chain: A: PDB Molecule:d-allose kinase;
PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution
12c2gupA_



100.0 17 PDB header:transferase
Chain: A: PDB Molecule:rok family protein;
PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose
13c1xc3A_



100.0 18 PDB header:transferase
Chain: A: PDB Molecule:putative fructokinase;
PDBTitle: structure of a putative fructokinase from bacillus subtilis
14d1sz2a1



100.0 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase
15d1z6ra3



100.0 97 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
16d1z05a2



100.0 42 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
17c1woqB_



100.0 20 PDB header:transferase
Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase;
PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution
18c2q2rA_



100.0 11 PDB header:transferase
Chain: A: PDB Molecule:glucokinase 1, putative;
PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp
19c2ch5D_



100.0 13 PDB header:transferase
Chain: D: PDB Molecule:nagk protein;
PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine
20c3lm2B_



100.0 19 PDB header:transferase
Chain: B: PDB Molecule:putative kinase;
PDBTitle: crystal structure of putative kinase. (17743352) from agrobacterium2 tumefaciens str. c58 (dupont) at 1.70 a resolution
21c2e2pA_



not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp
22d2aa4a2



not modelled 100.0 26 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
23d2ap1a1



not modelled 100.0 23 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
24c1zc6A_



not modelled 100.0 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable n-acetylglucosamine kinase;
PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23.
25d2gupa2



not modelled 100.0 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
26d2hoea2



not modelled 100.0 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
27d1q18a2



not modelled 99.9 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase
28d1xc3a2



not modelled 99.9 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
29d1z6ra2



not modelled 99.9 98 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
30d2hoea3



not modelled 99.9 24 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
31d1z05a3



not modelled 99.9 39 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
32d1woqa2



not modelled 99.8 27 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
33d2aa4a1



not modelled 99.8 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
34d2ap1a2



not modelled 99.8 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
35d1woqa1



not modelled 99.8 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
36d2ewsa1



not modelled 99.7 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
37d2ch5a1



not modelled 99.7 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
38d2gupa1



not modelled 99.7 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
39d1huxa_



not modelled 99.7 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
40d1xc3a1



not modelled 99.7 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
41c1bdgA_



not modelled 99.7 17 PDB header:hexokinase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: hexokinase from schistosoma mansoni complexed with glucose
42c1v4sA_



not modelled 99.7 17 PDB header:transferase
Chain: A: PDB Molecule:glucokinase isoform 2;
PDBTitle: crystal structure of human glucokinase
43c1ig8A_



not modelled 99.6 13 PDB header:transferase
Chain: A: PDB Molecule:hexokinase pii;
PDBTitle: crystal structure of yeast hexokinase pii with the correct2 amino acid sequence
44c3hm8D_



not modelled 99.6 18 PDB header:transferase
Chain: D: PDB Molecule:hexokinase-3;
PDBTitle: crystal structure of the c-terminal hexokinase domain of human hk3
45d1z05a1



not modelled 99.6 65 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
46c1qhaA_



not modelled 99.5 20 PDB header:transferase
Chain: A: PDB Molecule:protein (hexokinase);
PDBTitle: human hexokinase type i complexed with atp analogue amp-pnp
47d1z6ra1



not modelled 99.4 94 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
48c1zbsA_



not modelled 99.4 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pg1100;
PDBTitle: crystal structure of the putative n-acetylglucosamine kinase (pg1100)2 from porphyromonas gingivalis, northeast structural genomics target3 pgr18
49d1q18a1



not modelled 99.3 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase
50c1zxoB_



not modelled 99.2 10 PDB header:unknown function
Chain: B: PDB Molecule:conserved hypothetical protein q8a1p1;
PDBTitle: x-ray crystal structure of protein q8a1p1 from bacteroides2 thetaiotaomicron. northeast structural genomics consortium3 target btr25.
51d1zc6a1



not modelled 99.2 11 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
52d2ch5a2



not modelled 99.1 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
53c2dpnB_



not modelled 99.1 18 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8
54c1sazA_



not modelled 99.1 13 PDB header:transferase
Chain: A: PDB Molecule:probable butyrate kinase 2;
PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima
55c3p4iA_



not modelled 99.0 12 PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: crystal structure of acetate kinase from mycobacterium avium
56c2iirJ_



not modelled 98.9 13 PDB header:transferase
Chain: J: PDB Molecule:acetate kinase;
PDBTitle: acetate kinase from a hypothermophile thermotoga maritima
57c1tuuA_



not modelled 98.8 12 PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: acetate kinase crystallized with atpgs
58c2ivoC_



not modelled 98.7 12 PDB header:hydrolase
Chain: C: PDB Molecule:up1;
PDBTitle: structure of up1 protein
59c3h1qB_



not modelled 98.7 15 PDB header:structural protein
Chain: B: PDB Molecule:ethanolamine utilization protein eutj;
PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans
60c3hz6A_



not modelled 98.7 15 PDB header:transferase
Chain: A: PDB Molecule:xylulokinase;
PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum
61c3khyA_



not modelled 98.7 16 PDB header:transferase
Chain: A: PDB Molecule:propionate kinase;
PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4
62d1saza2



not modelled 98.6 11 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
63c3gbtA_



not modelled 98.5 12 PDB header:transferase
Chain: A: PDB Molecule:gluconate kinase;
PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus
64c3flcX_



not modelled 98.5 17 PDB header:transferase
Chain: X: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol
65d2p3ra1



not modelled 98.5 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
66c2cgkB_



not modelled 98.5 14 PDB header:transferase
Chain: B: PDB Molecule:l-rhamnulose kinase;
PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation.
67c2d4wA_



not modelled 98.5 12 PDB header:transferase
Chain: A: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060
68c3g25B_



not modelled 98.5 12 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol.
69d2p4wa1



not modelled 98.5 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF1790-like
70c3ezwD_



not modelled 98.4 12 PDB header:transferase
Chain: D: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices
71c1glbG_



not modelled 98.4 12 PDB header:phosphotransferase
Chain: G: PDB Molecule:glycerol kinase;
PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase
72c3enoB_



not modelled 98.4 13 PDB header:hydrolase/unknown function
Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase;
PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1
73c1x3nA_



not modelled 98.4 10 PDB header:transferase
Chain: A: PDB Molecule:propionate kinase;
PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium
74c3gg4B_



not modelled 98.4 16 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis
75c3ifrB_



not modelled 98.4 15 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum
76c2zf5O_



not modelled 98.3 13 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon
77d1ulya_



not modelled 98.2 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Hypothetical protein PH1932
78d1g99a2



not modelled 98.2 11 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
79d1v4sa1



not modelled 98.2 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
80d1zc6a2



not modelled 98.1 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
81d2e1za2



not modelled 98.1 11 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
82d1ub9a_



not modelled 98.0 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
83d1czan2



not modelled 98.0 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
84d1bdga1



not modelled 98.0 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
85c1xupO_



not modelled 98.0 15 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol
86c2nlxA_



not modelled 97.9 12 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: crystal structure of the apo e. coli xylulose kinase
87d1ig8a2



not modelled 97.9 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
88c3g3zA_



not modelled 97.9 14 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
89d1bg3a4



not modelled 97.9 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
90d2etha1



not modelled 97.8 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
91c3bj6B_



not modelled 97.8 13 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of marr family transcription regulator sp03579
92d1v4sa2



not modelled 97.8 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
93d1lnwa_



not modelled 97.8 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
94c2nyxB_



not modelled 97.8 16 PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404;
PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis
95d1jgsa_



not modelled 97.8 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
96d2fbha1



not modelled 97.8 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
97d1sfxa_



not modelled 97.8 17 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
98d1bg3a2



not modelled 97.8 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
99c3cuoB_



not modelled 97.8 12 PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav;
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
100d2bv6a1



not modelled 97.7 13 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
101c2l4aA_



not modelled 97.7 14 PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
102c3nrvC_



not modelled 97.7 10 PDB header:transcription regulator
Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family);
PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1
103c3en9B_



not modelled 97.7 11 PDB header:hydrolase
Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase;
PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein
104d1bg3a3



not modelled 97.7 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
105c2w40C_



not modelled 97.7 13 PDB header:transferase
Chain: C: PDB Molecule:glycerol kinase, putative;
PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol
106d1czan1



not modelled 97.7 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
107d1czan3



not modelled 97.7 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
108c2fxaB_



not modelled 97.7 8 PDB header:transcription
Chain: B: PDB Molecule:protease production regulatory protein hpr;
PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis.
109c3bpxB_



not modelled 97.7 17 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of marr
110d1ku9a_



not modelled 97.7 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding protein Mj223
111c2qwwB_



not modelled 97.7 20 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution
112d1bg3a1



not modelled 97.6 11 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
113c3e6mD_



not modelled 97.6 11 PDB header:transcription regulator
Chain: D: PDB Molecule:marr family transcriptional regulator;
PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss.
114c3jvpA_



not modelled 97.6 10 PDB header:transferase
Chain: A: PDB Molecule:ribulokinase;
PDBTitle: crystal structure of ribulokinase from bacillus halodurans
115c2qufB_



not modelled 97.6 11 PDB header:transcription
Chain: B: PDB Molecule:transcription factor pf0095;
PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus
116d1bdga2



not modelled 97.6 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
117d1lj9a_



not modelled 97.6 3 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
118d1s3ja_



not modelled 97.6 11 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
119d1ig8a1



not modelled 97.6 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
120d2fbia1



not modelled 97.6 16 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0