Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	M	L	L	P	L	F	I	L	V	G	F	I	A	D	Y	F	V	N	A	I	A	Y	H	L	S	P	L	E	D	K	T	A	L	T	F	R	Q	V	L	V	H	F	R	Q	K	K	Y	A	W	H	D	T	V	P	L	I	L	C
Secondary structure
SS confidence
Disorder		?	?																													?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	A	A	A	I	A	C	A	L	A	P	F	T	P	I	V	T	G	A	L	F	L	Y	F	C	F	V	L	T	L	S	V	I	D	F	R	T	Q	L	L	P	D	K	L	T	L	P	L	L	W	L	G	L	V	F	N	A	Q	Y	G
Secondary structure
SS confidence
Disorder																																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	I	D	L	H	D	A	V	Y	G	A	V	A	G	Y	G	V	L	W	C	V	Y	W	G	V	W	L	V	C	H	K	E	G	L	G	Y	G	D	F	K	L	L	A	A	A	G	A	W	C	G	W	Q	T	L	P	M	I	L	L	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Sequence		A	S	L	G	G	I	G	Y	A	I	V	S	Q	L	L	Q	R	R	T	I	T	T	I	A	F	G	P	W	L	A	L	G	S	M	I	N	L	G	Y	L	A	W	I	S	Y
Secondary structure
SS confidence
Disorder																		?	?																										?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3s0x chain B Region: 80 - 216 Aligned: 134 Modelled: 137 Confidence: 98.2% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:peptidase a24b, flak domain protein; PDBTitle: the crystal structure of gxgd membrane protease flak Phyre2 PDB 2k5c chain A Region: 40 - 55 Aligned: 16 Modelled: 16 Confidence: 80.8% Identity: 6% PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 Phyre2 PDB 3py7 chain A Region: 30 - 70 Aligned: 41 Modelled: 41 Confidence: 80.8% Identity: 12% PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution Phyre2 PDB 2owo chain A Region: 29 - 53 Aligned: 25 Modelled: 25 Confidence: 64.3% Identity: 4% PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate Phyre2 PDB 1v9p chain B Region: 29 - 51 Aligned: 23 Modelled: 23 Confidence: 63.6% Identity: 0% PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase Phyre2 PDB 1dgs chain A domain 1 Region: 39 - 49 Aligned: 11 Modelled: 11 Confidence: 62.3% Identity: 0% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: NAD+-dependent DNA ligase, domain 3 Phyre2 PDB 1pfv chain A domain 3 Region: 41 - 55 Aligned: 15 Modelled: 15 Confidence: 60.0% Identity: 7% Fold: Rubredoxin-like Superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain Family: Methionyl-tRNA synthetase (MetRS), Zn-domain Phyre2 PDB 2lcq chain A Region: 37 - 50 Aligned: 14 Modelled: 14 Confidence: 55.3% Identity: 7% PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii Phyre2 PDB 1dgs chain B Region: 29 - 51 Aligned: 23 Modelled: 23 Confidence: 54.4% Identity: 4% PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis Phyre2 PDB 1vd4 chain A Region: 29 - 71 Aligned: 43 Modelled: 43 Confidence: 53.9% Identity: 5% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 2fk4 chain A domain 1 Region: 32 - 73 Aligned: 42 Modelled: 42 Confidence: 53.0% Identity: 10% Fold: E6 C-terminal domain-like Superfamily: E6 C-terminal domain-like Family: E6 C-terminal domain-like Phyre2 PDB 2jne chain A domain 1 Region: 41 - 71 Aligned: 22 Modelled: 31 Confidence: 48.2% Identity: 14% Fold: Rubredoxin-like Superfamily: YfgJ-like Family: YfgJ-like Phyre2 PDB 2jne chain A Region: 41 - 71 Aligned: 22 Modelled: 31 Confidence: 48.2% Identity: 14% PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. Phyre2 PDB 2fiy chain A domain 1 Region: 9 - 48 Aligned: 38 Modelled: 40 Confidence: 45.8% Identity: 13% Fold: FdhE-like Superfamily: FdhE-like Family: FdhE-like Phyre2 PDB 2gnr chain A domain 1 Region: 32 - 48 Aligned: 17 Modelled: 17 Confidence: 44.2% Identity: 6% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: SSO2064-like Phyre2 PDB 2bay chain A domain 1 Region: 40 - 57 Aligned: 18 Modelled: 18 Confidence: 43.9% Identity: 6% Fold: RING/U-box Superfamily: RING/U-box Family: U-box Phyre2 PDB 2xeu chain A Region: 39 - 58 Aligned: 20 Modelled: 20 Confidence: 43.5% Identity: 15% PDB header:transcription Chain: A: PDB Molecule:ring finger protein 4; PDBTitle: ring domain Phyre2 PDB 1faq chain A Region: 36 - 71 Aligned: 24 Modelled: 36 Confidence: 41.0% Identity: 21% Fold: Cysteine-rich domain Superfamily: Cysteine-rich domain Family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) Phyre2 PDB 3pfq chain A Region: 36 - 71 Aligned: 28 Modelled: 36 Confidence: 38.2% Identity: 7% PDB header:transferase Chain: A: PDB Molecule:protein kinase c beta type; PDBTitle: crystal structure and allosteric activation of protein kinase c beta2 ii Phyre2 PDB 1rmd chain A domain 2 Region: 38 - 61 Aligned: 24 Modelled: 24 Confidence: 37.5% Identity: 8% Fold: RING/U-box Superfamily: RING/U-box Family: RING finger domain, C3HC4 Phyre2 1 c3s0xB_ 2 c2k5cA_ 3 c3py7A_ 4 c2owoA_ 5 c1v9pB_ 6 d1dgsa1 7 d1pfva3 8 c2lcqA_ 9 c1dgsB_ 10 d1vd4a_ 11 d2fk4a1 12 d2jnea1 13 c2jneA_ 14 d2fiya1 15 d2gnra1 16 d2baya1 17 c2xeuA_ 18 d1faqa_ 19 c3pfqA_ 20 d1rmda2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3s0xB_ 98.2 17 PDB header:hydrolase Chain: B: PDB Molecule:peptidase a24b, flak domain protein; PDBTitle: the crystal structure of gxgd membrane protease flak 2 c2k5cA_ 80.8 6 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 3 c3py7A_ 80.8 12 PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution 4 c2owoA_ 64.3 4 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 5 c1v9pB_ 63.6 0 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 6 d1dgsa1 62.3 0 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 7 d1pfva3 60.0 7 Fold:Rubredoxin-like Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain Family:Methionyl-tRNA synthetase (MetRS), Zn-domain 8 c2lcqA_ 55.3 7 PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii 9 c1dgsB_ 54.4 4 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 10 d1vd4a_ 53.9 5 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 11 d2fk4a1 53.0 10 Fold:E6 C-terminal domain-like Superfamily:E6 C-terminal domain-like Family:E6 C-terminal domain-like 12 d2jnea1 48.2 14 Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like 13 c2jneA_ 48.2 14 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. 14 d2fiya1 45.8 13 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 15 d2gnra1 44.2 6 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like 16 d2baya1 43.9 6 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 17 c2xeuA_ 43.5 15 PDB header:transcription Chain: A: PDB Molecule:ring finger protein 4; PDBTitle: ring domain 18 d1faqa_ 41.0 21 Fold:Cysteine-rich domain Superfamily:Cysteine-rich domain Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) 19 c3pfqA_ 38.2 7 PDB header:transferase Chain: A: PDB Molecule:protein kinase c beta type; PDBTitle: crystal structure and allosteric activation of protein kinase c beta2 ii 20 d1rmda2 37.5 8 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 21 c2kr6A_ not modelled 36.9 17 PDB header:hydrolase Chain: A: PDB Molecule:presenilin-1; PDBTitle: solution structure of presenilin-1 ctf subunit 22 d2ctda2 not modelled 36.0 22 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 23 c3lrqB_ not modelled 35.6 5 PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase trim37; PDBTitle: crystal structure of the u-box domain of human ubiquitin-2 protein ligase (e3), northeast structural genomics3 consortium target hr4604d. 24 c2f42A_ not modelled 34.6 5 PDB header:chaperone Chain: A: PDB Molecule:stip1 homology and u-box containing protein 1; PDBTitle: dimerization and u-box domains of zebrafish c-terminal of hsp702 interacting protein 25 c2jmdA_ not modelled 33.1 5 PDB header:ligase Chain: A: PDB Molecule:tnf receptor-associated factor 6; PDBTitle: solution structure of the ring domain of human traf6 26 d1iyca_ not modelled 31.5 21 Fold:Invertebrate chitin-binding proteins Superfamily:Invertebrate chitin-binding proteins Family:Antifungal peptide scarabaecin 27 c3cngC_ not modelled 31.3 0 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 28 d2cu8a1 not modelled 28.8 10 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 29 c3ky9B_ not modelled 28.8 4 PDB header:apoptosis Chain: B: PDB Molecule:proto-oncogene vav; PDBTitle: autoinhibited vav1 30 c2eciA_ not modelled 28.7 5 PDB header:metal binding protein Chain: A: PDB Molecule:tnf receptor-associated factor 6; PDBTitle: solution structure of the ring domain of the human tnf2 receptor-associated factor 6 protein 31 d1vfya_ not modelled 28.5 19 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 32 d1kbea_ not modelled 28.3 17 Fold:Cysteine-rich domain Superfamily:Cysteine-rich domain Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) 33 c2db6A_ not modelled 28.2 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sh3 and cysteine rich domain 3; PDBTitle: solution structure of rsgi ruh-051, a c1 domain of stac32 from human cdna 34 d1dvpa2 not modelled 28.2 9 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 35 d1s5pa_ not modelled 28.2 16 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 36 c2jrpA_ not modelled 28.2 0 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 37 c3llkA_ not modelled 28.0 10 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfhydryl oxidase 1; PDBTitle: sulfhydryl oxidase fragment of human qsox1 38 d2csha2 not modelled 27.9 18 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 39 c2klxA_ not modelled 27.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from bartonella henselae str.2 houston 40 d1jm7a_ not modelled 26.2 0 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 41 c2i5oA_ not modelled 25.9 8 PDB header:transferase Chain: A: PDB Molecule:dna polymerase eta; PDBTitle: solution structure of the ubiquitin-binding zinc finger2 (ubz) domain of the human dna y-polymerase eta 42 d2cona1 not modelled 25.5 18 Fold:Rubredoxin-like Superfamily:NOB1 zinc finger-like Family:NOB1 zinc finger-like 43 d2ct1a1 not modelled 25.1 10 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 44 d1dsva_ not modelled 25.0 29 Fold:Retrovirus zinc finger-like domains Superfamily:Retrovirus zinc finger-like domains Family:Retrovirus zinc finger-like domains 45 c3zyqA_ not modelled 24.5 7 PDB header:signaling Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution 46 d2c2la2 not modelled 24.1 5 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 47 c3odeA_ not modelled 23.4 7 PDB header:dna binding protein/dna Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: human parp-1 zinc finger 2 (zn2) bound to dna 48 d1ptqa_ not modelled 23.3 3 Fold:Cysteine-rich domain Superfamily:Cysteine-rich domain Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) 49 d2vrda1 not modelled 22.3 0 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:HkH motif-containing C2H2 finger 50 c1dvpA_ not modelled 21.9 7 PDB header:transferase Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction 51 c1rfhA_ not modelled 21.1 22 PDB header:metal binding protein Chain: A: PDB Molecule:ras association (ralgds/af-6) domain family 5; PDBTitle: solution structure of the c1 domain of nore1, a novel ras2 effector 52 d2jnya1 not modelled 21.0 0 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 53 d1x4ka1 not modelled 20.9 20 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 54 d1r3jc_ not modelled 20.7 21 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 55 d1wfka_ not modelled 20.5 8 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 56 d1yfua1 not modelled 20.4 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like 57 d1tbna_ not modelled 20.2 10 Fold:Cysteine-rich domain Superfamily:Cysteine-rich domain Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) 58 d2pk7a1 not modelled 20.1 0 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 59 c3ir9A_ not modelled 20.1 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:peptide chain release factor subunit 1; PDBTitle: c-terminal domain of peptide chain release factor from2 methanosarcina mazei. 60 c2j6aA_ not modelled 19.9 13 PDB header:transferase Chain: A: PDB Molecule:protein trm112; PDBTitle: crystal structure of s. cerevisiae ynr046w, a zinc finger2 protein from the erf1 methyltransferase complex. 61 d2c2vv1 not modelled 19.8 5 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 62 c2y43B_ not modelled 19.7 5 PDB header:ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase rad18; PDBTitle: rad18 ubiquitin ligase ring domain structure 63 d2hf1a1 not modelled 19.5 0 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 64 d2gmga1 not modelled 19.1 0 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like 65 c3nznA_ not modelled 19.1 10 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1 66 c2ecyA_ not modelled 18.9 6 PDB header:apoptosis Chain: A: PDB Molecule:tnf receptor-associated factor 3; PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger)" domain of tnf receptor-associated factor 3 67 c2egpA_ not modelled 18.7 4 PDB header:antiviral protein Chain: A: PDB Molecule:tripartite motif-containing protein 34; PDBTitle: solution structure of the ring-finger domain from human2 tripartite motif protein 34 68 d2yrka1 not modelled 18.5 15 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:HkH motif-containing C2H2 finger 69 c2gb5B_ not modelled 18.5 0 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 70 c2dmjA_ not modelled 18.4 0 PDB header:transferase Chain: A: PDB Molecule:poly (adp-ribose) polymerase family, member 1; PDBTitle: solution structure of the first zf-parp domain of human2 poly(adp-ribose)polymerase-1 71 c2kreA_ not modelled 18.2 11 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin conjugation factor e4 b; PDBTitle: solution structure of e4b/ufd2a u-box domain 72 d1iyma_ not modelled 17.7 0 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 73 c2jvyA_ not modelled 17.6 19 PDB header:metal binding protein Chain: A: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: solution structure of the eda-id-related c417f mutant of2 human nemo zinc finger 74 c3glsC_ not modelled 17.6 0 PDB header:hydrolase Chain: C: PDB Molecule:nad-dependent deacetylase sirtuin-3, PDBTitle: crystal structure of human sirt3 75 c1z2qA_ not modelled 17.1 14 PDB header:membrane protein Chain: A: PDB Molecule:lm5-1; PDBTitle: high-resolution solution structure of the lm5-1 fyve domain2 from leishmania major 76 d2dara2 not modelled 16.9 5 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 77 d1tdza3 not modelled 16.9 0 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 78 d1t1ha_ not modelled 16.7 11 Fold:RING/U-box Superfamily:RING/U-box Family:U-box 79 c1jocA_ not modelled 16.7 14 PDB header:membrane protein Chain: A: PDB Molecule:early endosomal autoantigen 1; PDBTitle: eea1 homodimer of c-terminal fyve domain bound to inositol2 1,3-diphosphate 80 d1rutx3 not modelled 16.7 7 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 81 c3mhsE_ not modelled 16.6 21 PDB header:hydrolase/transcription regulator/protei Chain: E: PDB Molecule:saga-associated factor 73; PDBTitle: structure of the saga ubp8/sgf11/sus1/sgf73 dub module bound to2 ubiquitin aldehyde 82 d1r2za3 not modelled 16.4 0 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 83 c2jr6A_ not modelled 16.4 0 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 84 c3htkC_ not modelled 16.3 13 PDB header:recombination/replication/ligase Chain: C: PDB Molecule:e3 sumo-protein ligase mms21; PDBTitle: crystal structure of mms21 and smc5 complex 85 d1xx6a2 not modelled 16.0 22 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 86 d1vqo11 not modelled 16.0 11 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37e 87 c2e7pC_ not modelled 15.9 4 PDB header:electron transport Chain: C: PDB Molecule:glutaredoxin; PDBTitle: crystal structure of the holo form of glutaredoxin c1 from populus2 tremula x tremuloides 88 c2e73A_ not modelled 15.7 7 PDB header:transferase Chain: A: PDB Molecule:protein kinase c gamma type; PDBTitle: solution structure of the phorbol esters/diacylglycerol2 binding domain of protein kinase c gamma 89 d1lkoa2 not modelled 15.4 11 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 90 c2zaeB_ not modelled 15.3 4 PDB header:hydrolase Chain: B: PDB Molecule:ribonuclease p protein component 4; PDBTitle: crystal structure of protein ph1601p in complex with protein ph1771p2 of archaeal ribonuclease p from pyrococcus horikoshii ot3 91 c3gkxB_ not modelled 15.3 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative arsc family related protein; PDBTitle: crystal structure of putative arsc family related protein from2 bacteroides fragilis 92 c2js4A_ not modelled 15.2 0 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 93 c2h0dB_ not modelled 15.2 16 PDB header:metal binding protein/ligase Chain: B: PDB Molecule:ubiquitin ligase protein ring2; PDBTitle: structure of a bmi-1-ring1b polycomb group ubiquitin ligase complex 94 c3nw0A_ not modelled 15.0 0 PDB header:metal binding protein Chain: A: PDB Molecule:non-structural maintenance of chromosomes element 1 PDBTitle: crystal structure of mageg1 and nse1 complex 95 c3i2dA_ not modelled 15.0 13 PDB header:ligase Chain: A: PDB Molecule:e3 sumo-protein ligase siz1; PDBTitle: crystal structure of s. cerevisiae sumo e3 ligase siz1 96 d1yc5a1 not modelled 15.0 9 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 97 d1imla2 not modelled 14.8 9 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 98 c1v9xA_ not modelled 14.7 0 PDB header:transferase Chain: A: PDB Molecule:poly (adp-ribose) polymerase; PDBTitle: solution structure of the first zn-finger domain of2 poly(adp-ribose) polymerase-1 99 d1q1aa_ not modelled 14.7 0 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0