Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	I	R	P	L	H	D	R	V	I	V	K	R	K	E	V	E	T	K	S	A	G	G	I	V	L	T	G	S	A	A	A	K	S	T	R	G	E	V	L	A	V	G	N	G	R	I	L	E	N	G	E	V	K	P	L	D	V	K
Secondary structure
SS confidence
Disorder		?	?	?		?	?	?								?	?	?	?	?	?	?										?	?	?	?	?	?											?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Sequence		V	G	D	I	V	I	F	N	D	G	Y	G	V	K	S	E	K	I	D	N	E	E	V	L	I	M	S	E	S	D	I	L	A	I	V	E	A
Secondary structure
SS confidence
Disorder																																					?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1aon chain O Region: 1 - 97 Aligned: 97 Modelled: 97 Confidence: 100.0% Identity: 100% Fold: GroES-like Superfamily: GroES-like Family: GroES Phyre2 PDB 1p3h chain A Region: 1 - 96 Aligned: 95 Modelled: 96 Confidence: 100.0% Identity: 45% Fold: GroES-like Superfamily: GroES-like Family: GroES Phyre2 PDB 1we3 chain O Region: 2 - 96 Aligned: 94 Modelled: 95 Confidence: 100.0% Identity: 53% Fold: GroES-like Superfamily: GroES-like Family: GroES Phyre2 PDB 1lep chain A Region: 1 - 96 Aligned: 77 Modelled: 78 Confidence: 99.9% Identity: 48% Fold: GroES-like Superfamily: GroES-like Family: GroES Phyre2 PDB 3nx6 chain A Region: 2 - 95 Aligned: 74 Modelled: 75 Confidence: 99.9% Identity: 49% PDB header:chaperone Chain: A: PDB Molecule:10kda chaperonin; PDBTitle: crystal structure of co-chaperonin, groes (xoo4289) from xanthomonas2 oryzae pv. oryzae kacc10331 Phyre2 PDB 1g31 chain A Region: 1 - 69 Aligned: 62 Modelled: 69 Confidence: 95.7% Identity: 19% Fold: GroES-like Superfamily: GroES-like Family: GroES Phyre2 PDB 1p82 chain A Region: 1 - 23 Aligned: 23 Modelled: 23 Confidence: 76.7% Identity: 43% PDB header:chaperone Chain: A: PDB Molecule:10 kda chaperonin; PDBTitle: nmr structure of 1-25 fragment of mycobacterium2 tuberculosis cpn10 Phyre2 PDB 1yqx chain B Region: 37 - 67 Aligned: 22 Modelled: 31 Confidence: 76.0% Identity: 50% PDB header:oxidoreductase Chain: B: PDB Molecule:sinapyl alcohol dehydrogenase; PDBTitle: sinapyl alcohol dehydrogenase at 2.5 angstrom resolution Phyre2 PDB 1llu chain D Region: 38 - 68 Aligned: 22 Modelled: 31 Confidence: 72.3% Identity: 50% PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase; PDBTitle: the ternary complex of pseudomonas aeruginosa alcohol2 dehydrogenase with its coenzyme and weak substrate Phyre2 PDB 4a10 chain A Region: 38 - 66 Aligned: 20 Modelled: 29 Confidence: 71.3% Identity: 45% PDB header:oxidoreductase Chain: A: PDB Molecule:octenoyl-coa reductase/carboxylase; PDBTitle: apo-structure of 2-octenoyl-coa carboxylase reductase cinf from2 streptomyces sp. Phyre2 PDB 2ejv chain A Region: 37 - 73 Aligned: 28 Modelled: 37 Confidence: 70.3% Identity: 36% PDB header:oxidoreductase Chain: A: PDB Molecule:l-threonine 3-dehydrogenase; PDBTitle: crystal structure of threonine 3-dehydrogenase complexed with nad+ Phyre2 PDB 1kev chain B Region: 37 - 73 Aligned: 28 Modelled: 37 Confidence: 70.2% Identity: 39% PDB header:oxidoreductase Chain: B: PDB Molecule:nadp-dependent alcohol dehydrogenase; PDBTitle: structure of nadp-dependent alcohol dehydrogenase Phyre2 PDB 1rjw chain A Region: 38 - 67 Aligned: 21 Modelled: 30 Confidence: 69.9% Identity: 48% PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase; PDBTitle: crystal structure of nad(+)-dependent alcohol dehydrogenase2 from bacillus stearothermophilus strain lld-r Phyre2 PDB 3m6i chain A Region: 37 - 67 Aligned: 22 Modelled: 31 Confidence: 69.6% Identity: 45% PDB header:oxidoreductase Chain: A: PDB Molecule:l-arabinitol 4-dehydrogenase; PDBTitle: l-arabinitol 4-dehydrogenase Phyre2 PDB 1kol chain A Region: 37 - 66 Aligned: 21 Modelled: 30 Confidence: 69.0% Identity: 38% PDB header:oxidoreductase Chain: A: PDB Molecule:formaldehyde dehydrogenase; PDBTitle: crystal structure of formaldehyde dehydrogenase Phyre2 PDB 2oui chain B Region: 37 - 73 Aligned: 28 Modelled: 37 Confidence: 68.9% Identity: 32% PDB header:oxidoreductase Chain: B: PDB Molecule:nadp-dependent alcohol dehydrogenase; PDBTitle: d275p mutant of alcohol dehydrogenase from protozoa entamoeba2 histolytica Phyre2 PDB 1piw chain A Region: 38 - 68 Aligned: 23 Modelled: 31 Confidence: 68.4% Identity: 35% PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical zinc-type alcohol dehydrogenase- PDBTitle: apo and holo structures of an nadp(h)-dependent cinnamyl2 alcohol dehydrogenase from saccharomyces cerevisiae Phyre2 PDB 1uuf chain A domain 1 Region: 36 - 70 Aligned: 26 Modelled: 35 Confidence: 67.7% Identity: 35% Fold: GroES-like Superfamily: GroES-like Family: Alcohol dehydrogenase-like, N-terminal domain Phyre2 PDB 1pl6 chain A Region: 38 - 94 Aligned: 48 Modelled: 57 Confidence: 67.7% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:sorbitol dehydrogenase; PDBTitle: human sdh/nadh/inhibitor complex Phyre2 PDB 2hcy chain D Region: 38 - 73 Aligned: 27 Modelled: 36 Confidence: 67.2% Identity: 30% PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 1; PDBTitle: yeast alcohol dehydrogenase i, saccharomyces cerevisiae fermentative2 enzyme Phyre2 1 d1aono_ 2 d1p3ha_ 3 d1we3o_ 4 d1lepa_ 5 c3nx6A_ 6 d1g31a_ 7 c1p82A_ 8 c1yqxB_ 9 c1lluD_ 10 c4a10A_ 11 c2ejvA_ 12 c1kevB_ 13 c1rjwA_ 14 c3m6iA_ 15 c1kolA_ 16 c2ouiB_ 17 c1piwA_ 18 d1uufa1 19 c1pl6A_ 20 c2hcyD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1aono_ 100.0 100 Fold:GroES-like Superfamily:GroES-like Family:GroES 2 d1p3ha_ 100.0 45 Fold:GroES-like Superfamily:GroES-like Family:GroES 3 d1we3o_ 100.0 53 Fold:GroES-like Superfamily:GroES-like Family:GroES 4 d1lepa_ 99.9 48 Fold:GroES-like Superfamily:GroES-like Family:GroES 5 c3nx6A_ 99.9 49 PDB header:chaperone Chain: A: PDB Molecule:10kda chaperonin; PDBTitle: crystal structure of co-chaperonin, groes (xoo4289) from xanthomonas2 oryzae pv. oryzae kacc10331 6 d1g31a_ 95.7 19 Fold:GroES-like Superfamily:GroES-like Family:GroES 7 c1p82A_ 76.7 43 PDB header:chaperone Chain: A: PDB Molecule:10 kda chaperonin; PDBTitle: nmr structure of 1-25 fragment of mycobacterium2 tuberculosis cpn10 8 c1yqxB_ 76.0 50 PDB header:oxidoreductase Chain: B: PDB Molecule:sinapyl alcohol dehydrogenase; PDBTitle: sinapyl alcohol dehydrogenase at 2.5 angstrom resolution 9 c1lluD_ 72.3 50 PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase; PDBTitle: the ternary complex of pseudomonas aeruginosa alcohol2 dehydrogenase with its coenzyme and weak substrate 10 c4a10A_ 71.3 45 PDB header:oxidoreductase Chain: A: PDB Molecule:octenoyl-coa reductase/carboxylase; PDBTitle: apo-structure of 2-octenoyl-coa carboxylase reductase cinf from2 streptomyces sp. 11 c2ejvA_ 70.3 36 PDB header:oxidoreductase Chain: A: PDB Molecule:l-threonine 3-dehydrogenase; PDBTitle: crystal structure of threonine 3-dehydrogenase complexed with nad+ 12 c1kevB_ 70.2 39 PDB header:oxidoreductase Chain: B: PDB Molecule:nadp-dependent alcohol dehydrogenase; PDBTitle: structure of nadp-dependent alcohol dehydrogenase 13 c1rjwA_ 69.9 48 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase; PDBTitle: crystal structure of nad(+)-dependent alcohol dehydrogenase2 from bacillus stearothermophilus strain lld-r 14 c3m6iA_ 69.6 45 PDB header:oxidoreductase Chain: A: PDB Molecule:l-arabinitol 4-dehydrogenase; PDBTitle: l-arabinitol 4-dehydrogenase 15 c1kolA_ 69.0 38 PDB header:oxidoreductase Chain: A: PDB Molecule:formaldehyde dehydrogenase; PDBTitle: crystal structure of formaldehyde dehydrogenase 16 c2ouiB_ 68.9 32 PDB header:oxidoreductase Chain: B: PDB Molecule:nadp-dependent alcohol dehydrogenase; PDBTitle: d275p mutant of alcohol dehydrogenase from protozoa entamoeba2 histolytica 17 c1piwA_ 68.4 35 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical zinc-type alcohol dehydrogenase- PDBTitle: apo and holo structures of an nadp(h)-dependent cinnamyl2 alcohol dehydrogenase from saccharomyces cerevisiae 18 d1uufa1 67.7 35 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 19 c1pl6A_ 67.7 19 PDB header:oxidoreductase Chain: A: PDB Molecule:sorbitol dehydrogenase; PDBTitle: human sdh/nadh/inhibitor complex 20 c2hcyD_ 67.2 30 PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 1; PDBTitle: yeast alcohol dehydrogenase i, saccharomyces cerevisiae fermentative2 enzyme 21 c1r37B_ not modelled 66.7 33 PDB header:oxidoreductase Chain: B: PDB Molecule:nad-dependent alcohol dehydrogenase; PDBTitle: alcohol dehydrogenase from sulfolobus solfataricus2 complexed with nad(h) and 2-ethoxyethanol 22 c1h2bA_ not modelled 66.1 30 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase; PDBTitle: crystal structure of the alcohol dehydrogenase from the2 hyperthermophilic archaeon aeropyrum pernix at 1.65a3 resolution 23 c2cf5A_ not modelled 65.9 44 PDB header:oxidoreductase Chain: A: PDB Molecule:cinnamyl alcohol dehydrogenase; PDBTitle: crystal structures of the arabidopsis cinnamyl alcohol2 dehydrogenases, atcad5 24 c2xaaC_ not modelled 65.0 36 PDB header:oxidoreductase Chain: C: PDB Molecule:secondary alcohol dehydrogenase; PDBTitle: alcohol dehydrogenase adh-'a' from rhodococcus ruber dsm2 44541 at ph 8.5 in complex with nad and butane-1,4-diol 25 c3krtC_ not modelled 63.8 30 PDB header:oxidoreductase Chain: C: PDB Molecule:crotonyl coa reductase; PDBTitle: crystal structure of putative crotonyl coa reductase from streptomyces2 coelicolor a3(2) 26 c1f8fA_ not modelled 63.7 44 PDB header:oxidoreductase Chain: A: PDB Molecule:benzyl alcohol dehydrogenase; PDBTitle: crystal structure of benzyl alcohol dehydrogenase from acinetobacter2 calcoaceticus 27 c2eihA_ not modelled 63.1 48 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase; PDBTitle: crystal structure of nad-dependent alcohol dehydrogenase 28 c1e3jA_ not modelled 62.2 32 PDB header:oxidoreductase Chain: A: PDB Molecule:nadp(h)-dependent ketose reductase; PDBTitle: ketose reductase (sorbitol dehydrogenase) from silverleaf2 whitefly 29 c1vj0B_ not modelled 61.4 33 PDB header:oxidoreductase Chain: B: PDB Molecule:alcohol dehydrogenase, zinc-containing; PDBTitle: crystal structure of alcohol dehydrogenase (tm0436) from thermotoga2 maritima at 2.00 a resolution 30 c1cdoB_ not modelled 60.0 36 PDB header:oxidoreductase (ch-oh(d)-nad(a)) Chain: B: PDB Molecule:alcohol dehydrogenase; PDBTitle: alcohol dehydrogenase (e.c.1.1.1.1) (ee isozyme) complexed with2 nicotinamide adenine dinucleotide (nad), and zinc 31 c2dphA_ not modelled 59.9 33 PDB header:oxidoreductase Chain: A: PDB Molecule:formaldehyde dismutase; PDBTitle: crystal structure of formaldehyde dismutase 32 c1ma0B_ not modelled 58.7 41 PDB header:oxidoreductase Chain: B: PDB Molecule:glutathione-dependent formaldehyde dehydrogenase; PDBTitle: ternary complex of human glutathione-dependent formaldehyde2 dehydrogenase with nad+ and dodecanoic acid 33 c3uogB_ not modelled 58.5 37 PDB header:oxidoreductase Chain: B: PDB Molecule:alcohol dehydrogenase; PDBTitle: crystal structure of putative alcohol dehydrogenase from sinorhizobium2 meliloti 1021 34 d1pl8a1 not modelled 56.9 20 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 35 c2dfvB_ not modelled 55.3 45 PDB header:oxidoreductase Chain: B: PDB Molecule:probable l-threonine 3-dehydrogenase; PDBTitle: hyperthermophilic threonine dehydrogenase from pyrococcus horikoshii 36 d2eyqa1 not modelled 54.9 15 Fold:SH3-like barrel Superfamily:CarD-like Family:CarD-like 37 c1uufA_ not modelled 54.7 32 PDB header:oxidoreductase Chain: A: PDB Molecule:zinc-type alcohol dehydrogenase-like protein PDBTitle: crystal structure of a zinc-type alcohol dehydrogenase-like2 protein yahk 38 c3cosD_ not modelled 53.8 39 PDB header:oxidoreductase Chain: D: PDB Molecule:alcohol dehydrogenase 4; PDBTitle: crystal structure of human class ii alcohol dehydrogenase (adh4) in2 complex with nad and zn 39 c1p0fA_ not modelled 51.7 36 PDB header:oxidoreductase Chain: A: PDB Molecule:nadp-dependent alcohol dehydrogenase; PDBTitle: crystal structure of the binary complex: nadp(h)-dependent vertebrate2 alcohol dehydrogenase (adh8) with the cofactor nadp 40 d1piwa1 not modelled 51.7 33 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 41 c1hf3A_ not modelled 51.3 45 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase e chain; PDBTitle: atomic x-ray structure of liver alcohol dehydrogenase2 containing cadmium and a hydroxide adduct to nadh 42 c3b70A_ not modelled 46.6 21 PDB header:oxidoreductase Chain: A: PDB Molecule:enoyl reductase; PDBTitle: crystal structure of aspergillus terreus trans-acting lovastatin2 polyketide enoyl reductase (lovc) with bound nadp 43 d2vnud3 not modelled 44.2 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 44 c2cdaA_ not modelled 41.6 33 PDB header:oxidoreductase Chain: A: PDB Molecule:glucose dehydrogenase; PDBTitle: sulfolobus solfataricus glucose dehydrogenase 1 in complex2 with nadp 45 c2h6eA_ not modelled 40.8 38 PDB header:oxidoreductase Chain: A: PDB Molecule:d-arabinose 1-dehydrogenase; PDBTitle: crystal structure of the d-arabinose dehydrogenase from sulfolobus2 solfataricus 46 d2z1ca1 not modelled 40.6 37 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 47 d1kola1 not modelled 39.6 38 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 48 d1p0fa1 not modelled 37.4 21 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 49 d1x82a_ not modelled 36.2 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 50 c3ip1C_ not modelled 30.4 19 PDB header:oxidoreductase Chain: C: PDB Molecule:alcohol dehydrogenase, zinc-containing; PDBTitle: structure of putative alcohol dehydrogenase (tm_042) from thermotoga2 maritima 51 c2fg0B_ not modelled 29.7 26 PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution 52 d1iuza_ not modelled 29.0 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 53 d1j3pa_ not modelled 28.4 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 54 c2j8zA_ not modelled 26.3 30 PDB header:oxidoreductase Chain: A: PDB Molecule:quinone oxidoreductase; PDBTitle: crystal structure of human p53 inducible oxidoreductase (2 tp53i3,pig3) 55 c2vnuD_ not modelled 26.1 27 PDB header:hydrolase/rna Chain: D: PDB Molecule:exosome complex exonuclease rrp44; PDBTitle: crystal structure of sc rrp44 56 c1n9gF_ not modelled 25.4 30 PDB header:hydrolase Chain: F: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: mitochondrial 2-enoyl thioester reductase etr1p/etr2p2 heterodimer from candida tropicalis 57 c3n2bD_ not modelled 23.4 19 PDB header:lyase Chain: D: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae. 58 d1uika1 not modelled 23.2 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 59 d1dgwa_ not modelled 22.7 16 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 60 d2ot2a1 not modelled 21.6 24 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 61 c2c0cB_ not modelled 21.1 29 PDB header:oxidoreductase Chain: B: PDB Molecule:zinc binding alcohol dehydrogenase, domain PDBTitle: structure of the mgc45594 gene product 62 c3npfB_ not modelled 20.2 31 PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution 63 d1jt8a_ not modelled 17.7 40 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 64 c3h41A_ not modelled 16.8 23 PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution 65 d2d6fa1 not modelled 16.7 30 Fold:Sm-like fold Superfamily:GatD N-terminal domain-like Family:GatD N-terminal domain-like 66 c2l55A_ not modelled 16.3 26 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 67 d1knwa1 not modelled 15.1 23 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 68 c2kijA_ not modelled 15.0 22 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the actuator domain of the copper-2 transporting atpase atp7a 69 c3gt2A_ not modelled 14.4 15 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c 70 c3d3rA_ not modelled 14.2 20 PDB header:chaperone Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf; PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1 71 c3gazA_ not modelled 13.8 21 PDB header:oxidoreductase Chain: A: PDB Molecule:alcohol dehydrogenase superfamily protein; PDBTitle: crystal structure of an alcohol dehydrogenase superfamily protein from2 novosphingobium aromaticivorans 72 d2oyza1 not modelled 13.8 19 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:VPA0057-like 73 d1gppa_ not modelled 13.5 23 Fold:Hedgehog/intein (Hint) domain Superfamily:Hedgehog/intein (Hint) domain Family:Intein (protein splicing domain) 74 d1g7sa1 not modelled 13.5 16 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 75 d1xa0a1 not modelled 13.3 17 Fold:GroES-like Superfamily:GroES-like Family:Alcohol dehydrogenase-like, N-terminal domain 76 c3gjbA_ not modelled 13.3 21 PDB header:biosynthetic protein Chain: A: PDB Molecule:cytc3; PDBTitle: cytc3 with fe(ii) and alpha-ketoglutarate 77 d1oe1a2 not modelled 12.8 42 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 78 d1mzya2 not modelled 12.8 58 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 79 c2xivA_ not modelled 12.6 12 PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis 80 d1zcea1 not modelled 12.6 40 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 81 c1dgsB_ not modelled 12.6 30 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 82 d2evra2 not modelled 12.6 26 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:NlpC/P60 83 d2jfga2 not modelled 12.5 27 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 84 c3pjyB_ not modelled 12.3 29 PDB header:transcription regulator Chain: B: PDB Molecule:hypothetical signal peptide protein; PDBTitle: crystal structure of a putative transcription regulator (r01717) from2 sinorhizobium meliloti 1021 at 1.55 a resolution 85 d3d3ra1 not modelled 12.2 20 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 86 d1u0la1 not modelled 12.1 28 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 87 c2k1gA_ not modelled 12.1 28 PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 88 d1smxa_ not modelled 12.0 29 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 89 c2fqpD_ not modelled 12.0 9 PDB header:metal binding protein Chain: D: PDB Molecule:hypothetical protein bp2299; PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution 90 d2gbsa1 not modelled 11.8 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 91 c3anuA_ not modelled 11.8 11 PDB header:lyase Chain: A: PDB Molecule:d-serine dehydratase; PDBTitle: crystal structure of d-serine dehydratase from chicken kidney 92 d1uija1 not modelled 11.6 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 93 c2e4fA_ not modelled 11.2 26 PDB header:transport protein Chain: A: PDB Molecule:g protein-activated inward rectifier potassium channel 2; PDBTitle: crystal structure of the cytoplasmic domain of g-protein-gated inward2 rectifier potassium channel kir3.2 94 d1xnea_ not modelled 11.1 64 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 95 c1qorA_ not modelled 11.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:quinone oxidoreductase; PDBTitle: crystal structure of escherichia coli quinone2 oxidoreductase complexed with nadph 96 c3pbiA_ not modelled 10.9 23 PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution 97 c3kgzA_ not modelled 10.8 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris 98 d1rc6a_ not modelled 10.4 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 99 d1e2wa2 not modelled 10.4 39 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:Cytochrome f, small domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0