Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP68661
DateThu Jan 5 12:11:06 GMT 2012
Unique Job IDd5687b23008eb498

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3g27A_
Top template information
PDB header:protein binding
Chain: A: PDB Molecule:82 prophage-derived uncharacterized protein ybco;
PDBTitle: structure of a putative bacteriophage protein from escherichia coli2 str. k-12 substr. mg1655
Confidence and coverage
Confidence:100.0% Coverage: 84%
81 residues ( 84% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE
Secondary structure 
SS confidence 
Disorder  ???
??????
?
???
Disorder confidence 
 
   .........70.........80.........90......
Sequence  IDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3g27 chain A

3D model

Region: 5 - 94
Aligned: 81
Modelled: 90
Confidence: 100.0%
Identity: 99%
PDB header:protein binding
Chain: A: PDB Molecule:82 prophage-derived uncharacterized protein ybco;
PDBTitle: structure of a putative bacteriophage protein from escherichia coli2 str. k-12 substr. mg1655

Phyre2

PDB 351c chain A

3D model

Region: 53 - 92
Aligned: 39
Modelled: 40
Confidence: 40.5%
Identity: 23%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 1fi3 chain A

3D model

Region: 53 - 92
Aligned: 39
Modelled: 40
Confidence: 39.5%
Identity: 28%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 2d0s chain A

3D model

Region: 53 - 92
Aligned: 39
Modelled: 40
Confidence: 34.6%
Identity: 26%
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus

Phyre2

PDB 2zxy chain A

3D model

Region: 53 - 76
Aligned: 23
Modelled: 24
Confidence: 34.1%
Identity: 17%
PDB header:oxygen binding, transport protein
Chain: A: PDB Molecule:cytochrome c552;
PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus

Phyre2

PDB 1cor chain A

3D model

Region: 53 - 76
Aligned: 23
Modelled: 24
Confidence: 30.8%
Identity: 26%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 1dvv chain A

3D model

Region: 53 - 77
Aligned: 24
Modelled: 25
Confidence: 25.7%
Identity: 25%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 2izp chain A domain 1

3D model

Region: 60 - 91
Aligned: 32
Modelled: 32
Confidence: 23.1%
Identity: 25%
Fold: IpaD-like
Superfamily: IpaD-like
Family: IpaD-like

Phyre2

PDB 1ynr chain A domain 1

3D model

Region: 53 - 92
Aligned: 39
Modelled: 40
Confidence: 23.0%
Identity: 18%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 2izp chain B

3D model

Region: 60 - 91
Aligned: 32
Modelled: 32
Confidence: 22.8%
Identity: 25%
PDB header:toxin
Chain: B: PDB Molecule:putative membrane antigen;
PDBTitle: bipd - an invasion prtein associated with the type-iii2 secretion system of burkholderia pseudomallei.

Phyre2

PDB 1mz4 chain A

3D model

Region: 54 - 69
Aligned: 15
Modelled: 16
Confidence: 22.3%
Identity: 20%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 1f1c chain A

3D model

Region: 54 - 69
Aligned: 15
Modelled: 16
Confidence: 17.2%
Identity: 27%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 3dr0 chain B

3D model

Region: 54 - 69
Aligned: 15
Modelled: 16
Confidence: 17.0%
Identity: 27%
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c6;
PDBTitle: structure of reduced cytochrome c6 from synechococcus sp.2 pcc 7002

Phyre2

PDB 1a56 chain A

3D model

Region: 53 - 69
Aligned: 16
Modelled: 17
Confidence: 16.8%
Identity: 25%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 1qn2 chain A

3D model

Region: 54 - 69
Aligned: 15
Modelled: 16
Confidence: 16.2%
Identity: 27%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 2gc4 chain D domain 1

3D model

Region: 54 - 65
Aligned: 11
Modelled: 12
Confidence: 13.7%
Identity: 36%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 2i5n chain C domain 1

3D model

Region: 53 - 87
Aligned: 32
Modelled: 35
Confidence: 12.8%
Identity: 31%
Fold: Multiheme cytochromes
Superfamily: Multiheme cytochromes
Family: Photosynthetic reaction centre (cytochrome subunit)

Phyre2

PDB 2jbl chain C

3D model

Region: 53 - 87
Aligned: 32
Modelled: 35
Confidence: 12.8%
Identity: 31%
PDB header:electron transport
Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c
PDBTitle: photosynthetic reaction center from blastochloris viridis

Phyre2

PDB 1h1o chain A domain 2

3D model

Region: 53 - 58
Aligned: 6
Modelled: 6
Confidence: 12.6%
Identity: 67%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Two-domain cytochrome c

Phyre2

PDB 2d0w chain A

3D model

Region: 54 - 66
Aligned: 12
Modelled: 13
Confidence: 12.5%
Identity: 33%
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome cl;
PDBTitle: crystal structure of cytochrome cl from hyphomicrobium2 denitrificans

Phyre2
1
c3g27A_
2
d351ca_
3
d1fi3a_
4
c2d0sA_
5
c2zxyA_
6
d1cora_
7
d1dvva_
8
d2izpa1
9
d1ynra1
10
c2izpB_
11
d1mz4a_
12
d1f1ca_
13
c3dr0B_
14
d1a56a_
15
d1qn2a_
16
d2gc4d1
17
d2i5nc1
18
c2jblC_
19
d1h1oa2
20
c2d0wA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3g27A_
100.0 99 PDB header:protein binding
Chain: A: PDB Molecule:82 prophage-derived uncharacterized protein ybco;
PDBTitle: structure of a putative bacteriophage protein from escherichia coli2 str. k-12 substr. mg1655
2d351ca_
40.5 23 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
3d1fi3a_
39.5 28 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
4c2d0sA_
34.6 26 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus
5c2zxyA_
34.1 17 PDB header:oxygen binding, transport protein
Chain: A: PDB Molecule:cytochrome c552;
PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus
6d1cora_
30.8 26 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
7d1dvva_
25.7 25 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
8d2izpa1
23.1 25 Fold:IpaD-like
Superfamily:IpaD-like
Family:IpaD-like
9d1ynra1
23.0 18 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
10c2izpB_
22.8 25 PDB header:toxin
Chain: B: PDB Molecule:putative membrane antigen;
PDBTitle: bipd - an invasion prtein associated with the type-iii2 secretion system of burkholderia pseudomallei.
11d1mz4a_
22.3 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
12d1f1ca_
17.2 27 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
13c3dr0B_
17.0 27 PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c6;
PDBTitle: structure of reduced cytochrome c6 from synechococcus sp.2 pcc 7002
14d1a56a_
16.8 25 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
15d1qn2a_
16.2 27 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
16d2gc4d1
13.7 36 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
17d2i5nc1
12.8 31 Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Photosynthetic reaction centre (cytochrome subunit)
18c2jblC_
12.8 31 PDB header:electron transport
Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c
PDBTitle: photosynthetic reaction center from blastochloris viridis
19d1h1oa2
12.6 67 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
20c2d0wA_
12.5 33 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome cl;
PDBTitle: crystal structure of cytochrome cl from hyphomicrobium2 denitrificans
21d1fcdc1
not modelled 12.4 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
22d1lmsa_
not modelled 12.3 27 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
23d1ql3a_
not modelled 12.1 42 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
24c1fcdD_
not modelled 11.9 20 PDB header:electron transport(flavocytochrome)
Chain: D: PDB Molecule:flavocytochrome c sulfide dehydrogenase
PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution
25c1w5cT_
not modelled 11.7 21 PDB header:photosynthesis
Chain: T: PDB Molecule:cytochrome c-550;
PDBTitle: photosystem ii from thermosynechococcus elongatus
26d1gnta_
not modelled 11.3 35 Fold:Prismane protein-like
Superfamily:Prismane protein-like
Family:Hybrid cluster protein (prismane protein)
27d2ccya_
not modelled 11.2 67 Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
28d1cpqa_
not modelled 11.1 83 Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
29d1mqva_
not modelled 11.0 67 Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
30d1iqca1
not modelled 11.0 57 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
31c3dmiA_
not modelled 10.9 29 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c6;
PDBTitle: crystallization and structural analysis of cytochrome c62 from the diatom phaeodactylum tricornutum at 1.5 a3 resolution
32d1gnla_
not modelled 10.9 35 Fold:Prismane protein-like
Superfamily:Prismane protein-like
Family:Hybrid cluster protein (prismane protein)
33d1f1fa_
not modelled 10.8 57 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
34c2zzsW_
not modelled 10.7 57 PDB header:electron transport
Chain: W: PDB Molecule:
PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633
35d1gqaa_
not modelled 10.6 67 Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
36d2j8wa1
not modelled 10.6 67 Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
37c3oa8A_
not modelled 10.5 57 PDB header:heme-binding protein/heme-binding protei
Chain: A: PDB Molecule:soxa;
PDBTitle: diheme soxax
38c1m70D_
not modelled 10.5 33 PDB header:electron transport
Chain: D: PDB Molecule:cytochrome c4;
PDBTitle: crystal structure of oxidized recombinant cytochrome c4 from2 pseudomonas stutzeri
39d1gksa_
not modelled 10.4 83 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
40d1e85a_
not modelled 10.2 83 Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
41d1cyja_
not modelled 10.2 57 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
42d1e29a_
not modelled 10.2 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
43d1hzua1
not modelled 10.1 14 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
44d2rdza1
not modelled 10.1 20 Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Di-heme elbow motif
45d1cc5a_
not modelled 10.1 80 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
46d1ctja_
not modelled 10.0 57 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
47d1c6ra_
not modelled 9.9 57 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
48d1i8oa_
not modelled 9.8 27 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
49d1s05a_
not modelled 9.8 50 Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
50c2hgoA_
not modelled 9.7 33 PDB header:toxin
Chain: A: PDB Molecule:cassiicolin;
PDBTitle: nmr structure of cassiicolin
51d1bbha_
not modelled 9.7 50 Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome c'-like
52d1c75a_
not modelled 9.7 43 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
53d1nmla1
not modelled 9.6 50 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
54d1h32a2
not modelled 9.4 23 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c SoxA
55d1dvha_
not modelled 9.3 60 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
56d1m70a2
not modelled 9.3 67 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
57d1tbxa_
not modelled 9.1 38 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:F93-like
58d1gu2a_
not modelled 9.1 57 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
59d1kb0a1
not modelled 9.0 60 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
60d1c52a_
not modelled 9.0 60 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
61d1h1oa1
not modelled 8.9 60 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
62c1h32A_
not modelled 8.8 43 PDB header:electron transfer
Chain: A: PDB Molecule:diheme cytochrome c;
PDBTitle: reduced soxax complex from rhodovulum sulfidophilum
63d1nira1
not modelled 8.6 14 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
64d1h9xa1
not modelled 8.6 60 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
65d1gdva_
not modelled 8.5 57 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
66d1nmla2
not modelled 8.5 67 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
67c2zonG_
not modelled 8.5 50 PDB header:oxidoreductase/electron transport
Chain: G: PDB Molecule:cytochrome c551;
PDBTitle: crystal structure of electron transfer complex of nitrite2 reductase with cytochrome c
68c1w2lA_
not modelled 8.4 67 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome oxidase subunit ii;
PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase
69d1hj3a1
not modelled 8.4 60 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
70c1fs9A_
not modelled 8.3 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c nitrite reductase;
PDBTitle: cytochrome c nitrite reductase from wolinella succinogenes-azide2 complex
71c2c1dC_
not modelled 8.0 20 PDB header:oxidoreductase
Chain: C: PDB Molecule:soxa;
PDBTitle: crystal structure of soxxa from p. pantotrophus
72d1wvec1
not modelled 8.0 60 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
73d1kv9a1
not modelled 8.0 80 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
74d1eb7a1
not modelled 7.9 50 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
75d1dw0a_
not modelled 7.8 43 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
76d1qksa1
not modelled 7.8 60 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
77d1e2rb1
not modelled 7.8 60 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
78d3cx5d1
not modelled 7.7 80 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Cytochrome bc1 domain
79d1kx7a_
not modelled 7.6 43 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
80d1wada_
not modelled 7.6 22 Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Cytochrome c3-like
81c2fwtA_
not modelled 7.5 63 PDB header:electron transport
Chain: A: PDB Molecule:dhc, diheme cytochrome c;
PDBTitle: crystal structure of dhc purified from rhodobacter2 sphaeroides
82c3a1gD_
not modelled 7.5 29 PDB header:transferase
Chain: D: PDB Molecule:polymerase basic protein 2;
PDBTitle: high-resolution crystal structure of rna polymerase pb1-pb22 subunits from influenza a virus
83c1pbyA_
not modelled 7.5 44 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda
PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution
84d1u5sb1
not modelled 7.5 45 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
85d1dy7b1
not modelled 7.4 60 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
86c1p84D_
not modelled 7.4 80 PDB header:oxidoreductase
Chain: D: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
87c2yiuE_
not modelled 7.2 100 PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution
88d1fuia1
not modelled 7.2 28 Fold:Reductase/isomerase/elongation factor common domain
Superfamily:FucI/AraA C-terminal domain-like
Family:L-fucose isomerase, C-terminal domain
89c3mk7B_
not modelled 7.2 50 PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o;
PDBTitle: the structure of cbb3 cytochrome oxidase
90c1zzhA_
not modelled 7.2 43 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c peroxidase;
PDBTitle: structure of the fully oxidized di-heme cytochrome c2 peroxidase from r. capsulatus
91d1ppjd1
not modelled 7.0 80 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Cytochrome bc1 domain
92d1fs7a_
not modelled 7.0 16 Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Di-heme elbow motif
93c3hq7A_
not modelled 6.9 57 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant
94d1c53a_
not modelled 6.9 50 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
95d1m70a1
not modelled 6.9 80 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
96c2echA_
not modelled 6.9 30 PDB header:blood coagulation inhibitor
Chain: A: PDB Molecule:echistatin;
PDBTitle: echistatin-the refined structure of a disintegrin in2 solution by 1h nmr
97d1pbya1
not modelled 6.8 80 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
98c2v07A_
not modelled 6.7 71 PDB header:photosynthesis
Chain: A: PDB Molecule:cytochrome c6;
PDBTitle: structure of the arabidopsis thaliana cytochrome c6a v52q2 variant
99c3cwbQ_
not modelled 6.6 100 PDB header:oxidoreductase
Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0