Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	D	E	S	D	D	K	T	E	A	P	T	P	H	R	L	E	K	A	R	E	E	G	Q	I	P	R	S	R	E	L	T	S	L	L	I	L	L	V	G	V	S	V	I	W	F	G	G	V	S	L	A	R	R	L	S	G	M	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?										?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	A	G	L	H	F	D	H	S	I	I	N	D	P	N	L	I	L	G	Q	I	I	L	L	I	R	E	A	M	L	A	L	L	P	L	I	S	G	V	V	L	V	A	L	I	S	P	V	M	L	G	G	L	V	F	S	G	K	S	L
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?																																					?					?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	P	K	F	S	K	L	N	P	L	P	G	I	K	R	M	F	S	A	Q	T	G	A	E	L	L	K	A	I	L	K	T	I	L	V	G	S	V	T	G	F	F	L	W	H	H	W	P	Q	M	M	R	L	M	A	E	S	P	I	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	M	G	N	A	M	D	L	V	G	L	C	A	L	L	V	V	L	G	V	I	P	M	V	G	F	D	V	F	F	Q	I	F	S	H	L	K	K	L	R	M	S	R	Q	D	I	R	D	E	F	K	Q	S	E	G	D	P	H	V	K
Secondary structure
SS confidence
Disorder																																							?	?	?	?	?										?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	R	I	R	Q	M	Q	R	A	A	A	R	R	R	M	M	A	D	V	P	K	A	D	V	I	V	N	N	P	T	H	Y	S	V	A	L	Q	Y	D	E	N	K	M	S	A	P	K	V	V	A	K	G	A	G	L	V	A	L	R	I
Secondary structure
SS confidence
Disorder													?	?	?				?	?	?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		R	E	I	G	A	E	N	N	V	P	T	L	E	A	P	P	L	A	R	A	L	Y	R	H	A	E	I	G	Q	Q	I	P	G	Q	L	Y	A	A	V	A	E	V	L	A	W	V	W	Q	L	K	R	W	R	L	A	G	G	Q	R	P
Secondary structure
SS confidence
Disorder																											?	?																								?		?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Sequence		V	Q	P	T	H	L	P	V	P	E	A	L	D	F	I	N	E	K	P	T	H	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?							?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jlh chain A Region: 236 - 348 Aligned: 113 Modelled: 113 Confidence: 100.0% Identity: 34% PDB header:protein transport Chain: A: PDB Molecule:yop proteins translocation protein u; PDBTitle: crystal structure of the cytoplasmic domain of yersinia2 pestis yscu n263a mutant Phyre2 PDB 3bzr chain A Region: 243 - 350 Aligned: 108 Modelled: 108 Confidence: 100.0% Identity: 28% PDB header:membrane protein, protein transport Chain: A: PDB Molecule:escu; PDBTitle: crystal structure of escu c-terminal domain with n262d mutation, space2 group p 41 21 2 Phyre2 PDB 3bzr chain A domain 1 Region: 243 - 350 Aligned: 108 Modelled: 108 Confidence: 100.0% Identity: 28% Fold: EscU C-terminal domain-like Superfamily: EscU C-terminal domain-like Family: EscU C-terminal domain-like Phyre2 PDB 3t7y chain B Region: 257 - 347 Aligned: 91 Modelled: 91 Confidence: 100.0% Identity: 31% PDB header:protein transport Chain: B: PDB Molecule:yop proteins translocation protein u; PDBTitle: structure of an autocleavage-inactive mutant of the cytoplasmic domain2 of ct091, the yscu homologue of chlamydia trachomatis Phyre2 PDB 3c01 chain H Region: 269 - 354 Aligned: 86 Modelled: 86 Confidence: 99.9% Identity: 20% PDB header:membrane protein, protein transport Chain: H: PDB Molecule:surface presentation of antigens protein spas; PDBTitle: crystal structural of native spas c-terminal domain Phyre2 PDB 3c00 chain B Region: 269 - 350 Aligned: 82 Modelled: 82 Confidence: 99.9% Identity: 30% PDB header:membrane protein, protein transport Chain: B: PDB Molecule:escu; PDBTitle: crystal structural of the mutated g247t escu/spas c-terminal domain Phyre2 PDB 2vt1 chain B Region: 269 - 349 Aligned: 81 Modelled: 81 Confidence: 99.9% Identity: 23% PDB header:membrane protein Chain: B: PDB Molecule:surface presentation of antigens protein spas; PDBTitle: crystal structure of the cytoplasmic domain of spa40, the2 specificity switch for the shigella flexneri type iii3 secretion system Phyre2 PDB 2yvq chain A Region: 231 - 326 Aligned: 64 Modelled: 64 Confidence: 87.1% Identity: 17% PDB header:ligase Chain: A: PDB Molecule:carbamoyl-phosphate synthase; PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens Phyre2 PDB 1a0r chain P Region: 210 - 307 Aligned: 90 Modelled: 98 Confidence: 76.9% Identity: 17% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Phosducin Phyre2 PDB 1wo8 chain A domain 1 Region: 290 - 330 Aligned: 41 Modelled: 41 Confidence: 75.8% Identity: 20% Fold: Methylglyoxal synthase-like Superfamily: Methylglyoxal synthase-like Family: Methylglyoxal synthase, MgsA Phyre2 PDB 2nu7 chain B domain 1 Region: 247 - 326 Aligned: 78 Modelled: 80 Confidence: 73.4% Identity: 17% Fold: Flavodoxin-like Superfamily: Succinyl-CoA synthetase domains Family: Succinyl-CoA synthetase domains Phyre2 PDB 1a9x chain A domain 2 Region: 299 - 330 Aligned: 32 Modelled: 32 Confidence: 64.9% Identity: 13% Fold: Methylglyoxal synthase-like Superfamily: Methylglyoxal synthase-like Family: Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain Phyre2 PDB 1uk5 chain A Region: 232 - 252 Aligned: 21 Modelled: 21 Confidence: 62.6% Identity: 24% Fold: Spectrin repeat-like Superfamily: BAG domain Family: BAG domain Phyre2 PDB 1ugo chain A Region: 232 - 252 Aligned: 21 Modelled: 21 Confidence: 62.5% Identity: 14% Fold: Spectrin repeat-like Superfamily: BAG domain Family: BAG domain Phyre2 PDB 3peu chain B Region: 211 - 250 Aligned: 38 Modelled: 39 Confidence: 62.0% Identity: 21% PDB header:hydrolase Chain: B: PDB Molecule:nucleoporin gle1; PDBTitle: s. cerevisiae dbp5 l327v c-terminal domain bound to gle1 h337r and ip6 Phyre2 PDB 1m7k chain A Region: 232 - 252 Aligned: 21 Modelled: 21 Confidence: 57.9% Identity: 10% Fold: Spectrin repeat-like Superfamily: BAG domain Family: BAG domain Phyre2 PDB 1yj7 chain A Region: 242 - 288 Aligned: 46 Modelled: 47 Confidence: 57.0% Identity: 17% PDB header:protein transport Chain: A: PDB Molecule:escj; PDBTitle: crystal structure of enteropathogenic e.coli (epec) type iii secretion2 system protein escj Phyre2 PDB 1d8j chain A Region: 200 - 241 Aligned: 42 Modelled: 42 Confidence: 56.0% Identity: 10% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: The central core domain of TFIIE beta Phyre2 PDB 3a8y chain D Region: 232 - 252 Aligned: 21 Modelled: 21 Confidence: 53.9% Identity: 24% PDB header:hydrolase Chain: D: PDB Molecule:bag family molecular chaperone regulator 5; PDBTitle: crystal structure of the complex between the bag5 bd5 and2 hsp70 nbd Phyre2 PDB 1rv3 chain A Region: 261 - 314 Aligned: 35 Modelled: 35 Confidence: 53.6% Identity: 34% Fold: PLP-dependent transferase-like Superfamily: PLP-dependent transferases Family: GABA-aminotransferase-like Phyre2 1 c2jlhA_ 2 c3bzrA_ 3 d3bzra1 4 c3t7yB_ 5 c3c01H_ 6 c3c00B_ 7 c2vt1B_ 8 c2yvqA_ 9 d1a0rp_ 10 d1wo8a1 11 d2nu7b1 12 d1a9xa2 13 d1uk5a_ 14 d1ugoa_ 15 c3peuB_ 16 d1m7ka_ 17 c1yj7A_ 18 d1d8ja_ 19 c3a8yD_ 20 d1rv3a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2jlhA_ 100.0 34 PDB header:protein transport Chain: A: PDB Molecule:yop proteins translocation protein u; PDBTitle: crystal structure of the cytoplasmic domain of yersinia2 pestis yscu n263a mutant 2 c3bzrA_ 100.0 28 PDB header:membrane protein, protein transport Chain: A: PDB Molecule:escu; PDBTitle: crystal structure of escu c-terminal domain with n262d mutation, space2 group p 41 21 2 3 d3bzra1 100.0 28 Fold:EscU C-terminal domain-like Superfamily:EscU C-terminal domain-like Family:EscU C-terminal domain-like 4 c3t7yB_ 100.0 31 PDB header:protein transport Chain: B: PDB Molecule:yop proteins translocation protein u; PDBTitle: structure of an autocleavage-inactive mutant of the cytoplasmic domain2 of ct091, the yscu homologue of chlamydia trachomatis 5 c3c01H_ 99.9 20 PDB header:membrane protein, protein transport Chain: H: PDB Molecule:surface presentation of antigens protein spas; PDBTitle: crystal structural of native spas c-terminal domain 6 c3c00B_ 99.9 30 PDB header:membrane protein, protein transport Chain: B: PDB Molecule:escu; PDBTitle: crystal structural of the mutated g247t escu/spas c-terminal domain 7 c2vt1B_ 99.9 23 PDB header:membrane protein Chain: B: PDB Molecule:surface presentation of antigens protein spas; PDBTitle: crystal structure of the cytoplasmic domain of spa40, the2 specificity switch for the shigella flexneri type iii3 secretion system 8 c2yvqA_ 87.1 17 PDB header:ligase Chain: A: PDB Molecule:carbamoyl-phosphate synthase; PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens 9 d1a0rp_ 76.9 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Phosducin 10 d1wo8a1 75.8 20 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA 11 d2nu7b1 73.4 17 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 12 d1a9xa2 64.9 13 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain 13 d1uk5a_ 62.6 24 Fold:Spectrin repeat-like Superfamily:BAG domain Family:BAG domain 14 d1ugoa_ 62.5 14 Fold:Spectrin repeat-like Superfamily:BAG domain Family:BAG domain 15 c3peuB_ 62.0 21 PDB header:hydrolase Chain: B: PDB Molecule:nucleoporin gle1; PDBTitle: s. cerevisiae dbp5 l327v c-terminal domain bound to gle1 h337r and ip6 16 d1m7ka_ 57.9 10 Fold:Spectrin repeat-like Superfamily:BAG domain Family:BAG domain 17 c1yj7A_ 57.0 17 PDB header:protein transport Chain: A: PDB Molecule:escj; PDBTitle: crystal structure of enteropathogenic e.coli (epec) type iii secretion2 system protein escj 18 d1d8ja_ 56.0 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:The central core domain of TFIIE beta 19 c3a8yD_ 53.9 24 PDB header:hydrolase Chain: D: PDB Molecule:bag family molecular chaperone regulator 5; PDBTitle: crystal structure of the complex between the bag5 bd5 and2 hsp70 nbd 20 d1rv3a_ 53.6 34 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 21 d1eucb1 not modelled 50.1 17 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 22 d1mv8a2 not modelled 49.8 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 23 c1r6xA_ not modelled 49.5 25 PDB header:transferase Chain: A: PDB Molecule:atp:sulfate adenylyltransferase; PDBTitle: the crystal structure of a truncated form of yeast atp2 sulfurylase, lacking the c-terminal aps kinase-like domain,3 in complex with sulfate 24 d2a7va1 not modelled 49.1 34 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 25 c2a7vA_ not modelled 49.1 34 PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: human mitochondrial serine hydroxymethyltransferase 2 26 d1ko7a1 not modelled 48.5 12 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:HPr kinase/phoshatase HprK N-terminal domain 27 d1g8fa2 not modelled 47.8 24 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:ATP sulfurylase catalytic domain 28 c2o14A_ not modelled 47.2 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yxim; PDBTitle: x-ray crystal structure of protein yxim_bacsu from bacillus2 subtilis. northeast structural genomics consortium target3 sr595 29 c2vycA_ not modelled 46.8 22 PDB header:lyase Chain: A: PDB Molecule:biodegradative arginine decarboxylase; PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli 30 d2csua3 not modelled 44.8 27 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 31 d1t9ba1 not modelled 43.5 13 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 32 d1knxa1 not modelled 43.4 15 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:HPr kinase/phoshatase HprK N-terminal domain 33 c3nysA_ not modelled 41.2 19 PDB header:transferase Chain: A: PDB Molecule:aminotransferase wbpe; PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution 34 d1bj4a_ not modelled 37.6 29 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 35 c1c4kA_ not modelled 37.5 13 PDB header:lyase Chain: A: PDB Molecule:protein (ornithine decarboxylase); PDBTitle: ornithine decarboxylase mutant (gly121tyr) 36 c2r18A_ not modelled 37.2 26 PDB header:viral protein Chain: A: PDB Molecule:capsid assembly protein vp3; PDBTitle: structural insights into the multifunctional protein vp3 of2 birnaviruses 37 d1oi7a1 not modelled 36.7 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 38 c3iynO_ not modelled 35.9 24 PDB header:virus Chain: O: PDB Molecule:hexon-associated protein; PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5 39 c2qjfB_ not modelled 35.0 18 PDB header:transferase Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'- PDBTitle: crystal structure of atp-sulfurylase domain of human paps2 synthetase 1 40 c3bcxA_ not modelled 34.0 18 PDB header:transferase Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- PDBTitle: e1 dehydrase 41 d2nu7a1 not modelled 33.8 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 42 d1gqoa_ not modelled 33.1 34 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 43 d1f6ga_ not modelled 32.9 13 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 44 d1vmda_ not modelled 32.7 14 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA 45 c3me5A_ not modelled 31.9 26 PDB header:transferase Chain: A: PDB Molecule:cytosine-specific methyltransferase; PDBTitle: crystal structure of putative dna cytosine methylase from shigella2 flexneri 2a str. 301 46 d1qzxa2 not modelled 31.3 35 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 47 c1yrwA_ not modelled 30.6 18 PDB header:transferase Chain: A: PDB Molecule:protein arna; PDBTitle: crystal structure of e.coli arna transformylase domain 48 c3e6gA_ not modelled 30.2 18 PDB header:lyase Chain: A: PDB Molecule:cystathionine gamma-lyase-like protein; PDBTitle: crystal structure of xometc, a cystathionine c-lyase-like2 protein from xanthomonas oryzae pv.oryzae 49 d2naca2 not modelled 29.5 27 Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain 50 c3dm5A_ not modelled 29.5 19 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 51 d1c4ka2 not modelled 28.7 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Ornithine decarboxylase major domain 52 d1ydwa1 not modelled 28.6 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 53 d1vl2a1 not modelled 28.5 17 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 54 c2po3B_ not modelled 28.4 17 PDB header:transferase Chain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product 55 c3n8kG_ not modelled 28.1 39 PDB header:lyase Chain: G: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: type ii dehydroquinase from mycobacterium tuberculosis complexed with2 citrazinic acid 56 d1ni5a1 not modelled 28.0 6 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 57 c2jqeA_ not modelled 27.6 25 PDB header:signaling protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: soution structure of af54 m-domain 58 c3qi6B_ not modelled 27.5 17 PDB header:lyase Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs); PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99 59 d1cs1a_ not modelled 27.5 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 60 d1wy5a1 not modelled 27.4 16 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:PP-loop ATPase 61 c3h7uA_ not modelled 27.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of the plant stress-response enzyme akr4c9 62 d1d2ta_ not modelled 27.0 8 Fold:Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily:Acid phosphatase/Vanadium-dependent haloperoxidase Family:Type 2 phosphatidic acid phosphatase, PAP2 63 c2uygF_ not modelled 26.6 43 PDB header:lyase Chain: F: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystallogaphic structure of the typeii 3-dehydroquinase2 from thermus thermophilus 64 d1j20a1 not modelled 26.4 8 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 65 c2csuB_ not modelled 26.4 27 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:457aa long hypothetical protein; PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3 66 c3f4lF_ not modelled 26.4 12 PDB header:oxidoreductase Chain: F: PDB Molecule:putative oxidoreductase yhhx; PDBTitle: crystal structure of a probable oxidoreductase yhhx in2 triclinic form. northeast structural genomics target er647 67 d1hq1a_ not modelled 26.4 20 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 68 c3nt5B_ not modelled 26.3 14 PDB header:oxidoreductase Chain: B: PDB Molecule:inositol 2-dehydrogenase/d-chiro-inositol 3-dehydrogenase; PDBTitle: crystal structure of myo-inositol dehydrogenase from bacillus subtilis2 with bound cofactor and product inosose 69 c2c7tA_ not modelled 26.3 35 PDB header:transferase Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis. 70 c3dc1A_ not modelled 26.2 24 PDB header:transferase Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate 71 c1wziA_ not modelled 26.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: structural basis for alteration of cofactor specificity of2 malate dehydrogenase from thermus flavus 72 d2ffha2 not modelled 25.9 25 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 73 d1ekqa_ not modelled 25.9 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 74 c3u80A_ not modelled 25.7 53 PDB header:unknown function Chain: A: PDB Molecule:3-dehydroquinate dehydratase, type ii; PDBTitle: 1.60 angstrom resolution crystal structure of a 3-dehydroquinate2 dehydratase-like protein from bifidobacterium longum 75 d1uqra_ not modelled 25.7 43 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 76 c2hroA_ not modelled 25.0 17 PDB header:transferase Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: structure of the full-lenght enzyme i of the pts system from2 staphylococcus carnosus 77 c1a5zA_ not modelled 25.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: lactate dehydrogenase from thermotoga maritima (tmldh) 78 c3aemD_ not modelled 25.0 9 PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate 79 c3dpiA_ not modelled 24.5 16 PDB header:ligase Chain: A: PDB Molecule:nad+ synthetase; PDBTitle: crystal structure of nad+ synthetase from burkholderia pseudomallei 80 d1h05a_ not modelled 24.5 39 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 81 c3ndnC_ not modelled 24.3 6 PDB header:lyase Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase; PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate 82 d2ji7a1 not modelled 23.8 23 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 83 c2lbwA_ not modelled 23.2 22 PDB header:rna binding protein Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 2; PDBTitle: solution structure of the s. cerevisiae h/aca rnp protein nhp2p-s82w2 mutant 84 c2y8nC_ not modelled 22.8 19 PDB header:lyase Chain: C: PDB Molecule:4-hydroxyphenylacetate decarboxylase large subunit; PDBTitle: crystal structure of glycyl radical enzyme 85 c2cb1A_ not modelled 22.7 12 PDB header:lyase Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase; PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2. 86 c1zh8B_ not modelled 22.7 8 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of oxidoreductase (tm0312) from thermotoga maritima2 at 2.50 a resolution 87 c2bn5A_ not modelled 22.7 11 PDB header:nuclear protein Chain: A: PDB Molecule:psi; PDBTitle: p-element somatic inhibitor protein complex with u1-70k2 proline-rich peptide 88 d1ui5a2 not modelled 22.6 21 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 89 c3lwzC_ not modelled 22.4 34 PDB header:lyase Chain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis 90 d1gtza_ not modelled 22.4 47 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 91 c2r0tA_ not modelled 22.3 24 PDB header:transferase Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase; PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine 92 d2c4va1 not modelled 22.1 25 Fold:Flavodoxin-like Superfamily:Type II 3-dehydroquinate dehydratase Family:Type II 3-dehydroquinate dehydratase 93 c3c1aB_ not modelled 22.1 12 PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative oxidoreductase (zp_00056571.1) from2 magnetospirillum magnetotacticum ms-1 at 1.85 a resolution 94 c3qh9A_ not modelled 21.7 13 PDB header:structural protein Chain: A: PDB Molecule:liprin-beta-2; PDBTitle: human liprin-beta2 coiled-coil 95 c3c19A_ not modelled 21.7 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mk0293; PDBTitle: crystal structure of protein mk0293 from methanopyrus kandleri av19 96 d1rlga_ not modelled 21.5 20 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:L30e/L7ae ribosomal proteins 97 c2f3oB_ not modelled 21.5 17 PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus 98 d1ibja_ not modelled 21.5 18 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 99 c1ibjC_ not modelled 21.5 18 PDB header:lyase Chain: C: PDB Molecule:cystathionine beta-lyase; PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana 100 d1b9ha_ not modelled 21.4 27 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 101 d1p3da1 not modelled 21.3 7 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 102 c3iayA_ not modelled 21.1 20 PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase delta catalytic subunit; PDBTitle: ternary complex of dna polymerase delta 103 d2a6ta2 not modelled 21.1 19 Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like 104 c2pq1B_ not modelled 20.9 18 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 105 c3ezyB_ not modelled 20.7 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:dehydrogenase; PDBTitle: crystal structure of probable dehydrogenase tm_0414 from2 thermotoga maritima 106 c2k9iB_ not modelled 20.6 38 PDB header:dna binding protein Chain: B: PDB Molecule:plasmid prn1, complete sequence; PDBTitle: nmr structure of plasmid copy control protein orf56 from2 sulfolobus islandicus 107 c2ogeC_ not modelled 20.3 17 PDB header:transferase Chain: C: PDB Molecule:transaminase; PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0