Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A8G6
DateThu Jan 5 11:07:47 GMT 2012
Unique Job IDd1c83e180274347c

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3b6iB_
Top template information
PDB header:flavoprotein
Chain: B: PDB Molecule:flavoprotein wrba;
PDBTitle: wrba from escherichia coli, native structure
Confidence and coverage
Confidence:100.0% Coverage: 99%
197 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPV
Secondary structure 
























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Disorder  ??

























































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   .........70.........80.........90.........100.........110.........120
Sequence  ATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQ
Secondary structure 























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   .........130.........140.........150.........160.........170.........180
Sequence  EQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELS
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Disorder 























?
?

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??????????




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   .........190........
Sequence  IARYQGEYVAGLAVKLNG
Secondary structure 

SS confidence 

















Disorder 















??
Disorder confidence 

















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3b6i chain B

3D model

Region: 2 - 198
Aligned: 197
Modelled: 197
Confidence: 100.0%
Identity: 100%
PDB header:flavoprotein
Chain: B: PDB Molecule:flavoprotein wrba;
PDBTitle: wrba from escherichia coli, native structure

Phyre2

PDB 2zki chain H

3D model

Region: 2 - 197
Aligned: 189
Modelled: 193
Confidence: 100.0%
Identity: 40%
PDB header:transcription
Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding
PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)

Phyre2

PDB 1ydg chain A

3D model

Region: 2 - 197
Aligned: 188
Modelled: 196
Confidence: 100.0%
Identity: 38%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: WrbA-like

Phyre2

PDB 2a5l chain A domain 1

3D model

Region: 2 - 197
Aligned: 168
Modelled: 169
Confidence: 100.0%
Identity: 43%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: WrbA-like

Phyre2

PDB 3d7n chain A

3D model

Region: 2 - 197
Aligned: 155
Modelled: 155
Confidence: 100.0%
Identity: 31%
PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin, wrba-like protein;
PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens

Phyre2

PDB 2ark chain A domain 1

3D model

Region: 2 - 197
Aligned: 164
Modelled: 177
Confidence: 100.0%
Identity: 32%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: WrbA-like

Phyre2

PDB 1sqs chain A

3D model

Region: 2 - 195
Aligned: 167
Modelled: 168
Confidence: 100.0%
Identity: 13%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Hypothetical protein SP1951

Phyre2

PDB 2q62 chain A

3D model

Region: 2 - 197
Aligned: 175
Modelled: 177
Confidence: 100.0%
Identity: 17%
PDB header:flavoprotein
Chain: A: PDB Molecule:arsh;
PDBTitle: crystal structure of arsh from sinorhizobium meliloti

Phyre2

PDB 1nni chain 1

3D model

Region: 3 - 197
Aligned: 168
Modelled: 174
Confidence: 99.9%
Identity: 15%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: NADPH-dependent FMN reductase

Phyre2

PDB 3lcm chain B

3D model

Region: 2 - 189
Aligned: 170
Modelled: 172
Confidence: 99.9%
Identity: 16%
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159

Phyre2

PDB 1ycg chain A domain 1

3D model

Region: 1 - 193
Aligned: 146
Modelled: 154
Confidence: 99.9%
Identity: 22%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Flavodoxin-related

Phyre2

PDB 1rtt chain A

3D model

Region: 2 - 189
Aligned: 170
Modelled: 172
Confidence: 99.9%
Identity: 13%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: NADPH-dependent FMN reductase

Phyre2

PDB 1t5b chain A

3D model

Region: 1 - 191
Aligned: 170
Modelled: 170
Confidence: 99.9%
Identity: 22%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Quinone reductase

Phyre2

PDB 2fzv chain C

3D model

Region: 2 - 197
Aligned: 173
Modelled: 178
Confidence: 99.9%
Identity: 13%
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:putative arsenical resistance protein;
PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri

Phyre2

PDB 3k1y chain E

3D model

Region: 2 - 195
Aligned: 170
Modelled: 170
Confidence: 99.9%
Identity: 18%
PDB header:oxidoreductase
Chain: E: PDB Molecule:oxidoreductase;
PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d

Phyre2

PDB 1t0i chain A

3D model

Region: 2 - 192
Aligned: 167
Modelled: 174
Confidence: 99.9%
Identity: 17%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: NADPH-dependent FMN reductase

Phyre2

PDB 1e5d chain A domain 1

3D model

Region: 2 - 195
Aligned: 146
Modelled: 154
Confidence: 99.9%
Identity: 25%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Flavodoxin-related

Phyre2

PDB 3fni chain A

3D model

Region: 2 - 197
Aligned: 147
Modelled: 148
Confidence: 99.9%
Identity: 16%
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a

Phyre2

PDB 2hpv chain A

3D model

Region: 2 - 191
Aligned: 169
Modelled: 169
Confidence: 99.9%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase;
PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis

Phyre2

PDB 2vzh chain A

3D model

Region: 3 - 191
Aligned: 168
Modelled: 174
Confidence: 99.9%
Identity: 17%
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-dependent fmn reductase;
PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex

Phyre2
1

c3b6iB_
2

c2zkiH_
3

d1ydga_
4

d2a5la1
5

c3d7nA_
6

d2arka1
7

d1sqsa_
8

c2q62A_
9

d1nni1_
10

c3lcmB_
11

d1ycga1
12

d1rtta_
13

d1t5ba_
14

c2fzvC_
15

c3k1yE_
16

d1t0ia_
17

d1e5da1
18

c3fniA_
19

c2hpvA_
20

c2vzhA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3b6iB_



100.0 100 PDB header:flavoprotein
Chain: B: PDB Molecule:flavoprotein wrba;
PDBTitle: wrba from escherichia coli, native structure
2c2zkiH_



100.0 40 PDB header:transcription
Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding
PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
3d1ydga_



100.0 38 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
4d2a5la1



100.0 43 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
5c3d7nA_



100.0 31 PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin, wrba-like protein;
PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens
6d2arka1



100.0 32 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
7d1sqsa_



100.0 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Hypothetical protein SP1951
8c2q62A_



100.0 17 PDB header:flavoprotein
Chain: A: PDB Molecule:arsh;
PDBTitle: crystal structure of arsh from sinorhizobium meliloti
9d1nni1_



99.9 15 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
10c3lcmB_



99.9 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159
11d1ycga1



99.9 22 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
12d1rtta_



99.9 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
13d1t5ba_



99.9 22 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
14c2fzvC_



99.9 13 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:putative arsenical resistance protein;
PDBTitle: crystal structure of an apo form of a flavin-binding protein from2 shigella flexneri
15c3k1yE_



99.9 18 PDB header:oxidoreductase
Chain: E: PDB Molecule:oxidoreductase;
PDBTitle: x-ray structure of oxidoreductase from corynebacterium2 diphtheriae. orthorombic crystal form, northeast structural3 genomics consortium target cdr100d
16d1t0ia_



99.9 17 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
17d1e5da1



99.9 25 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
18c3fniA_



99.9 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
19c2hpvA_



99.9 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase;
PDBTitle: crystal structure of fmn-dependent azoreductase from enterococcus2 faecalis
20c2vzhA_



99.9 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-dependent fmn reductase;
PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex
21c1ychD_



not modelled 99.9 22 PDB header:oxidoreductase
Chain: D: PDB Molecule:nitric oxide reductase;
PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase
22c3fvwA_



not modelled 99.9 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative nad(p)h-dependent fmn reductase;
PDBTitle: crystal structure of the q8dwd8_strmu protein from2 streptococcus mutans. northeast structural genomics3 consortium target smr99.
23c2ohiB_



not modelled 99.9 26 PDB header:oxidoreductase
Chain: B: PDB Molecule:type a flavoprotein fpra;
PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state
24c2q9uB_



not modelled 99.9 27 PDB header:oxidoreductase
Chain: B: PDB Molecule:a-type flavoprotein;
PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis
25d2fzva1



not modelled 99.9 13 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:NADPH-dependent FMN reductase
26d2qwxa1



not modelled 99.9 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
27c3p0rA_



not modelled 99.9 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:azoreductase;
PDBTitle: crystal structure of azoreductase from bacillus anthracis str. sterne
28d2z98a1



not modelled 99.9 24 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
29d1qrda_



not modelled 99.9 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
30c3hlyA_



not modelled 99.9 22 PDB header:flavoprotein
Chain: A: PDB Molecule:flavodoxin-like domain;
PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d.
31d1d4aa_



not modelled 99.9 17 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
32d1vmea1



not modelled 99.9 22 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
33c2v9cA_



not modelled 99.9 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1;
PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red.
34d1dxqa_



not modelled 99.9 22 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
35d1rlia_



not modelled 99.9 21 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Hypothetical protein YwqN
36c1e5dA_



not modelled 99.9 23 PDB header:oxidoreductase
Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase;
PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas
37c1vmeB_



not modelled 99.9 21 PDB header:electron transport
Chain: B: PDB Molecule:flavoprotein;
PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
38c3f2vA_



not modelled 99.9 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 14;
PDBTitle: crystal structure of the general stress protein 142 (tde0354) in complex with fmn from treponema denticola,3 northeast structural genomics consortium target tdr58.
39c3edoA_



not modelled 99.8 21 PDB header:flavoprotein
Chain: A: PDB Molecule:putative trp repressor binding protein;
PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution
40c3klbA_



not modelled 99.8 21 PDB header:flavoprotein
Chain: A: PDB Molecule:putative flavoprotein;
PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution
41c3rpeA_



not modelled 99.8 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:modulator of drug activity b;
PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92.
42d2fz5a1



not modelled 99.8 24 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
43d5nula_



not modelled 99.8 24 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
44c2amjD_



not modelled 99.7 16 PDB header:oxidoreductase
Chain: D: PDB Molecule:modulator of drug activity b;
PDBTitle: crystal structure of modulator of drug activity b from escherichia2 coli o157:h7
45c3f6sI_



not modelled 99.7 24 PDB header:electron transport
Chain: I: PDB Molecule:flavodoxin;
PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers
46c3ha2B_



not modelled 99.7 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-quinone reductase;
PDBTitle: crystal structure of protein (nadph-quinone reductase) from2 p.pentosaceus, northeast structural genomics consortium target ptr24a
47c3eywA_



not modelled 99.7 19 PDB header:transport protein
Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux
PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff
48c2wc1A_



not modelled 99.6 18 PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin;
PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a
49d1ag9a_



not modelled 99.6 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
50d1oboa_



not modelled 99.6 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
51c2hnbA_



not modelled 99.6 15 PDB header:electron transport
Chain: A: PDB Molecule:protein mioc;
PDBTitle: solution structure of a bacterial holo-flavodoxin
52d1czna_



not modelled 99.6 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
53d1f4pa_



not modelled 99.5 23 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
54d1yoba1



not modelled 99.5 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
55d2fcra_



not modelled 99.5 20 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
56d1ykga1



not modelled 99.5 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
57d1fuea_



not modelled 99.4 16 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
58c1bvyF_



not modelled 99.4 22 PDB header:oxidoreductase
Chain: F: PDB Molecule:protein (cytochrome p450 bm-3);
PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3)
59d1bvyf_



not modelled 99.4 22 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
60d1b1ca_



not modelled 99.4 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
61d1tlla2



not modelled 99.4 18 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
62c3hr4C_



not modelled 99.3 16 PDB header:oxidoreductase/metal binding protein
Chain: C: PDB Molecule:nitric oxide synthase, inducible;
PDBTitle: human inos reductase and calmodulin complex
63d1ja1a2



not modelled 99.2 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
64c1tllA_



not modelled 98.9 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide synthase, brain;
PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution.
65c2bpoA_



not modelled 98.8 21 PDB header:reductase
Chain: A: PDB Molecule:nadph-cytochrom p450 reductase;
PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a.
66c2x2oA_



not modelled 98.7 22 PDB header:flavoprotein
Chain: A: PDB Molecule:nrdi protein;
PDBTitle: the flavoprotein nrdi from bacillus cereus with the2 initially oxidized fmn cofactor in an intermediate3 radiation reduced state
67c1j9zB_



not modelled 98.6 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-cytochrome p450 reductase;
PDBTitle: cypor-w677g
68d1rlja_



not modelled 98.3 19 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavoprotein NrdI
69c3n39D_



not modelled 98.1 20 PDB header:oxidoreductase
Chain: D: PDB Molecule:protein nrdi;
PDBTitle: ribonucleotide reductase dimanganese(ii)-nrdf from escherichia coli in2 complex with nrdi
70c2kyrA_



not modelled 95.1 31 PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1;
PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544
71c3czcA_



not modelled 95.0 13 PDB header:transferase
Chain: A: PDB Molecule:rmpb;
PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans
72d2r4qa1



not modelled 94.7 33 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
73c3a9rA_



not modelled 94.3 20 PDB header:isomerase
Chain: A: PDB Molecule:d-arabinose isomerase;
PDBTitle: x-ray structures of bacillus pallidus d-arabinose2 isomerasecomplex with (4r)-2-methylpentane-2,4-diol
74d1n1ea2



not modelled 92.1 23 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
75d2a9va1



not modelled 91.9 12 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
76d1uqra_



not modelled 91.8 25 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
77c3kklA_



not modelled 91.7 12 PDB header:hydrolase
Chain: A: PDB Molecule:probable chaperone protein hsp33;
PDBTitle: crystal structure of functionally unknown hsp33 from2 saccharomyces cerevisiae
78c1tvmA_



not modelled 91.3 13 PDB header:transferase
Chain: A: PDB Molecule:pts system, galactitol-specific iib component;
PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system
79d2r48a1



not modelled 90.7 27 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
80c3ghyA_



not modelled 90.7 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:ketopantoate reductase protein;
PDBTitle: crystal structure of a putative ketopantoate reductase from ralstonia2 solanacearum molk2
81c3c7cB_



not modelled 90.5 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:octopine dehydrogenase;
PDBTitle: a structural basis for substrate and stereo selectivity in2 octopine dehydrogenase (odh-nadh-l-arginine)
82c3u80A_



not modelled 90.5 20 PDB header:unknown function
Chain: A: PDB Molecule:3-dehydroquinate dehydratase, type ii;
PDBTitle: 1.60 angstrom resolution crystal structure of a 3-dehydroquinate2 dehydratase-like protein from bifidobacterium longum
83d1jvna2



not modelled 90.5 22 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
84c3d54D_



not modelled 90.2 21 PDB header:ligase
Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1;
PDBTitle: stucture of purlqs from thermotoga maritima
85c2gcgB_



not modelled 90.2 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:glyoxylate reductase/hydroxypyruvate reductase;
PDBTitle: ternary crystal structure of human glyoxylate2 reductase/hydroxypyruvate reductase
86c2vpiA_



not modelled 90.1 24 PDB header:ligase
Chain: A: PDB Molecule:gmp synthase;
PDBTitle: human gmp synthetase - glutaminase domain
87c1jvnB_



not modelled 90.0 19 PDB header:transferase
Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf;
PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites
88c3qvjB_



not modelled 89.9 12 PDB header:isomerase
Chain: B: PDB Molecule:putative hydantoin racemase;
PDBTitle: allantoin racemase from klebsiella pneumoniae
89c3dojA_



not modelled 89.6 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:dehydrogenase-like protein;
PDBTitle: structure of glyoxylate reductase 1 from arabidopsis2 (atglyr1)
90c2ho3D_



not modelled 89.5 11 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of oxidoreductase, gfo/idh/moca family from2 streptococcus pneumoniae
91d1txga2



not modelled 89.3 23 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
92c3ic5A_



not modelled 88.8 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative saccharopine dehydrogenase;
PDBTitle: n-terminal domain of putative saccharopine dehydrogenase from ruegeria2 pomeroyi.
93c3dhnA_



not modelled 88.7 16 PDB header:isomerase, lyase
Chain: A: PDB Molecule:nad-dependent epimerase/dehydratase;
PDBTitle: crystal structure of the putative epimerase q89z24_bactn2 from bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr310.
94c3nbmA_



not modelled 87.7 30 PDB header:transferase
Chain: A: PDB Molecule:pts system, lactose-specific iibc components;
PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.
95c2l2qA_



not modelled 87.2 9 PDB header:transferase
Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela);
PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi
96c3s40C_



not modelled 86.6 23 PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne
97c3euwB_



not modelled 86.3 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:myo-inositol dehydrogenase;
PDBTitle: crystal structure of a myo-inositol dehydrogenase from corynebacterium2 glutamicum atcc 13032
98d2p1ra1



not modelled 85.5 15 Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
99c2axqA_



not modelled 84.8 25 PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae
100d2ab0a1



not modelled 84.7 17 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
101c3upsA_



not modelled 84.5 9 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:iojap-like protein;
PDBTitle: crystal structure of iojap-like protein from zymomonas mobilis
102c3f5dA_



not modelled 84.3 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ydea;
PDBTitle: crystal structure of a protein of unknown function from2 bacillus subtilis
103d1u7za_



not modelled 84.2 14 Fold:Ribokinase-like
Superfamily:CoaB-like
Family:CoaB-like
104c3plnA_



not modelled 83.9 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:udp-glucose 6-dehydrogenase;
PDBTitle: crystal structure of klebsiella pneumoniae udp-glucose 6-dehydrogenase2 complexed with udp-glucose
105d2nv0a1



not modelled 83.9 32 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
106c3d8tB_



not modelled 83.9 11 PDB header:lyase
Chain: B: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: thermus thermophilus uroporphyrinogen iii synthase
107d1iiba_



not modelled 83.8 15 Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Lactose/Cellobiose specific IIB subunit
108d1ka9h_



not modelled 83.7 26 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
109d1ks9a2



not modelled 83.7 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
110c3l6dB_



not modelled 83.3 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase from pseudomonas putida2 kt2440
111d1u9ca_



not modelled 82.6 16 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
112d1mv8a3



not modelled 82.6 20 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
Family:UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
113c2f1kD_



not modelled 82.5 14 PDB header:oxidoreductase
Chain: D: PDB Molecule:prephenate dehydrogenase;
PDBTitle: crystal structure of synechocystis arogenate dehydrogenase
114c3ktdC_



not modelled 81.6 8 PDB header:oxidoreductase
Chain: C: PDB Molecule:prephenate dehydrogenase;
PDBTitle: crystal structure of a putative prephenate dehydrogenase (cgl0226)2 from corynebacterium glutamicum atcc 13032 at 2.60 a resolution
115c3fd8A_



not modelled 81.5 12 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis
116d1vjta1



not modelled 81.4 10 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
117c2z2vA_



not modelled 81.2 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein ph1688;
PDBTitle: crystal structure of l-lysine dehydrogenase from2 hyperthermophilic archaeon pyrococcus horikoshii
118d1i36a2



not modelled 81.1 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
119c3ia7A_



not modelled 80.9 11 PDB header:transferase
Chain: A: PDB Molecule:calg4;
PDBTitle: crystal structure of calg4, the calicheamicin glycosyltransferase
120c2eklA_



not modelled 80.3 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase;
PDBTitle: structure of st1218 protein from sulfolobus tokodaii

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0