Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	I	T	K	D	Q	I	I	E	A	V	A	A	M	S	V	M	D	V	V	E	L	I	S	A	M	E	E	K	F	G	V	S	A	A	A	A	V	A	V	A	A	G	P	V	E	A	A	E	E	K	T	E	F	D	V	I	L	K
Secondary structure
SS confidence
Disorder		?	?	?	?																													?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	A	G	A	N	K	V	A	V	I	K	A	V	R	G	A	T	G	L	G	L	K	E	A	K	D	L	V	E	S	A	P	A	A	L	K	E	G	V	S	K	D	D	A	E	A	L	K	K	A	L	E	E	A	G	A	E	V	E	V
Secondary structure
SS confidence
Disorder																			?	?	?																	?																			?				?
Disorder confidence
		.
Sequence		K
Secondary structure
SS confidence
Disorder		?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gya chain 3 Region: 3 - 121 Aligned: 119 Modelled: 119 Confidence: 100.0% Identity: 100% PDB header:ribosome Chain: 3: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: structure of the 50s subunit of a pre-translocational e.2 coli ribosome obtained by fitting atomic models for rna and3 protein components into cryo-em map emd-1056 Phyre2 PDB 1giy chain J Region: 3 - 121 Aligned: 119 Modelled: 119 Confidence: 100.0% Identity: 66% PDB header:ribosome Chain: J: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: crystal structure of the ribosome at 5.5 a resolution. this2 file, 1giy, contains the 50s ribosome subunit. the 30s3 ribosome subunit, three trna, and mrna molecules are in the4 file 1gix Phyre2 PDB 2ftc chain F Region: 3 - 120 Aligned: 118 Modelled: 118 Confidence: 100.0% Identity: 29% PDB header:ribosome Chain: F: PDB Molecule:39s ribosomal protein l12, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome Phyre2 PDB 2zjq chain 5 Region: 50 - 121 Aligned: 71 Modelled: 72 Confidence: 99.9% Identity: 66% PDB header:ribosome Chain: 5: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: interaction of l7 with l11 induced by microccocin binding2 to the deinococcus radiodurans 50s subunit Phyre2 PDB 2zjq chain 5 domain 1 Region: 50 - 121 Aligned: 71 Modelled: 72 Confidence: 99.9% Identity: 66% Fold: ClpS-like Superfamily: ClpS-like Family: Ribosomal protein L7/12, C-terminal domain Phyre2 PDB 1ctf chain A Region: 54 - 121 Aligned: 68 Modelled: 68 Confidence: 99.9% Identity: 100% Fold: ClpS-like Superfamily: ClpS-like Family: Ribosomal protein L7/12, C-terminal domain Phyre2 PDB 1dd3 chain A domain 2 Region: 54 - 121 Aligned: 68 Modelled: 68 Confidence: 99.9% Identity: 71% Fold: ClpS-like Superfamily: ClpS-like Family: Ribosomal protein L7/12, C-terminal domain Phyre2 PDB 1dd3 chain A domain 1 Region: 3 - 53 Aligned: 51 Modelled: 51 Confidence: 98.8% Identity: 49% Fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain Phyre2 PDB 1dd4 chain D Region: 3 - 42 Aligned: 40 Modelled: 40 Confidence: 98.3% Identity: 53% Fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain Phyre2 PDB 2gyc chain 3 domain 1 Region: 3 - 49 Aligned: 47 Modelled: 47 Confidence: 97.9% Identity: 100% Fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain Phyre2 PDB 1dd4 chain C Region: 3 - 37 Aligned: 35 Modelled: 35 Confidence: 97.9% Identity: 49% Fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain Phyre2 PDB 1rqt chain A Region: 2 - 38 Aligned: 37 Modelled: 37 Confidence: 97.6% Identity: 100% PDB header:ribosome Chain: A: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: nmr structure of dimeric n-terminal domain of ribosomal2 protein l7 from e.coli Phyre2 PDB 1rqt chain A Region: 2 - 38 Aligned: 37 Modelled: 37 Confidence: 97.6% Identity: 100% Fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain Phyre2 PDB 1rqt chain B Region: 2 - 38 Aligned: 37 Modelled: 37 Confidence: 97.6% Identity: 100% PDB header:ribosome Chain: B: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: nmr structure of dimeric n-terminal domain of ribosomal2 protein l7 from e.coli Phyre2 PDB 1dd3 chain D Region: 3 - 34 Aligned: 32 Modelled: 32 Confidence: 97.6% Identity: 44% PDB header:ribosome Chain: D: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: crystal structure of ribosomal protein l12 from thermotoga maritima Phyre2 PDB 1dd3 chain C Region: 3 - 34 Aligned: 32 Modelled: 32 Confidence: 97.6% Identity: 44% PDB header:ribosome Chain: C: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: crystal structure of ribosomal protein l12 from thermotoga maritima Phyre2 PDB 1zax chain W Region: 3 - 32 Aligned: 30 Modelled: 30 Confidence: 97.2% Identity: 43% PDB header:structural protein Chain: W: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b Phyre2 PDB 1zav chain W Region: 3 - 32 Aligned: 30 Modelled: 30 Confidence: 97.2% Identity: 43% PDB header:structural protein Chain: W: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21 Phyre2 PDB 1zax chain V Region: 3 - 32 Aligned: 30 Modelled: 30 Confidence: 97.2% Identity: 43% PDB header:structural protein Chain: V: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b Phyre2 PDB 1zav chain U Region: 3 - 32 Aligned: 30 Modelled: 30 Confidence: 97.2% Identity: 43% PDB header:structural protein Chain: U: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21 Phyre2 1 c2gya3_ 2 c1giyJ_ 3 c2ftcF_ 4 c2zjq5_ 5 d2zjq51 6 d1ctfa_ 7 d1dd3a2 8 d1dd3a1 9 d1dd4d_ 10 d2gyc31 11 d1dd4c_ 12 c1rqtA_ 13 d1rqta_ 14 c1rqtB_ 15 c1dd3D_ 16 c1dd3C_ 17 c1zaxW_ 18 c1zavW_ 19 c1zaxV_ 20 c1zavU_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2gya3_ 100.0 100 PDB header:ribosome Chain: 3: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: structure of the 50s subunit of a pre-translocational e.2 coli ribosome obtained by fitting atomic models for rna and3 protein components into cryo-em map emd-1056 2 c1giyJ_ 100.0 66 PDB header:ribosome Chain: J: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: crystal structure of the ribosome at 5.5 a resolution. this2 file, 1giy, contains the 50s ribosome subunit. the 30s3 ribosome subunit, three trna, and mrna molecules are in the4 file 1gix 3 c2ftcF_ 100.0 29 PDB header:ribosome Chain: F: PDB Molecule:39s ribosomal protein l12, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 4 c2zjq5_ 99.9 66 PDB header:ribosome Chain: 5: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: interaction of l7 with l11 induced by microccocin binding2 to the deinococcus radiodurans 50s subunit 5 d2zjq51 99.9 66 Fold:ClpS-like Superfamily:ClpS-like Family:Ribosomal protein L7/12, C-terminal domain 6 d1ctfa_ 99.9 100 Fold:ClpS-like Superfamily:ClpS-like Family:Ribosomal protein L7/12, C-terminal domain 7 d1dd3a2 99.9 71 Fold:ClpS-like Superfamily:ClpS-like Family:Ribosomal protein L7/12, C-terminal domain 8 d1dd3a1 98.8 49 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 9 d1dd4d_ 98.3 53 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 10 d2gyc31 97.9 100 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 11 d1dd4c_ 97.9 49 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 12 c1rqtA_ 97.6 100 PDB header:ribosome Chain: A: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: nmr structure of dimeric n-terminal domain of ribosomal2 protein l7 from e.coli 13 d1rqta_ 97.6 100 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 14 c1rqtB_ 97.6 100 PDB header:ribosome Chain: B: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: nmr structure of dimeric n-terminal domain of ribosomal2 protein l7 from e.coli 15 c1dd3D_ 97.6 44 PDB header:ribosome Chain: D: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: crystal structure of ribosomal protein l12 from thermotoga maritima 16 c1dd3C_ 97.6 44 PDB header:ribosome Chain: C: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: crystal structure of ribosomal protein l12 from thermotoga maritima 17 c1zaxW_ 97.2 43 PDB header:structural protein Chain: W: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b 18 c1zavW_ 97.2 43 PDB header:structural protein Chain: W: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21 19 c1zaxV_ 97.2 43 PDB header:structural protein Chain: V: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b 20 c1zavU_ 97.2 43 PDB header:structural protein Chain: U: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21 21 d1zavu1 not modelled 97.2 43 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 22 c1zaxU_ not modelled 97.2 43 PDB header:structural protein Chain: U: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b 23 c1zavV_ not modelled 97.1 43 PDB header:structural protein Chain: V: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21 24 c1zawU_ not modelled 97.0 43 PDB header:structural protein Chain: U: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form a 25 c1zawW_ not modelled 97.0 43 PDB header:structural protein Chain: W: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form a 26 c1zawV_ not modelled 97.0 43 PDB header:structural protein Chain: V: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form a 27 c1zaxZ_ not modelled 96.9 45 PDB header:structural protein Chain: Z: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b 28 c1zavX_ not modelled 96.6 41 PDB header:structural protein Chain: X: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21 29 c1zaxX_ not modelled 96.6 41 PDB header:structural protein Chain: X: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b 30 c1zaxY_ not modelled 96.6 41 PDB header:structural protein Chain: Y: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b 31 c1zavY_ not modelled 96.6 41 PDB header:structural protein Chain: Y: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21 32 c1zawY_ not modelled 96.3 41 PDB header:structural protein Chain: Y: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form a 33 c1zawX_ not modelled 96.3 41 PDB header:structural protein Chain: X: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form a 34 c1zavZ_ not modelled 94.4 41 PDB header:structural protein Chain: Z: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21 35 d1zavz1 not modelled 94.4 41 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 36 c1zawZ_ not modelled 94.2 41 PDB header:structural protein Chain: Z: PDB Molecule:50s ribosomal protein l7/l12; PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form a 37 d1aipc1 not modelled 78.1 32 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 38 c1aipG_ not modelled 70.6 37 PDB header:complex of two elongation factors Chain: G: PDB Molecule:elongation factor ts; PDBTitle: ef-tu ef-ts complex from thermus thermophilus 39 d1efub3 not modelled 67.1 28 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 40 d1xb2b1 not modelled 61.7 21 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 41 d2cp9a1 not modelled 56.9 23 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 42 c1xb2B_ not modelled 52.3 21 PDB header:translation Chain: B: PDB Molecule:elongation factor ts, mitochondrial; PDBTitle: crystal structure of bos taurus mitochondrial elongation2 factor tu/ts complex 43 c1efuB_ not modelled 40.6 26 PDB header:complex (two elongation factors) Chain: B: PDB Molecule:elongation factor ts; PDBTitle: elongation factor complex ef-tu/ef-ts from escherichia coli 44 c3mmpC_ not modelled 29.8 21 PDB header:transferase Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins 45 c2jmlA_ not modelled 26.5 25 PDB header:transcription Chain: A: PDB Molecule:dna binding domain/transcriptional regulator; PDBTitle: solution structure of the n-terminal domain of cara repressor 46 c2iifA_ not modelled 26.1 21 PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna 47 c4a1cK_ not modelled 20.8 6 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein l27a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 48 d1in0a2 not modelled 20.5 24 Fold:Ferredoxin-like Superfamily:YajQ-like Family:YajQ-like 49 d1mula_ not modelled 17.4 33 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 50 d1vqol1 not modelled 17.1 38 Fold:Ribosomal proteins L15p and L18e Superfamily:Ribosomal proteins L15p and L18e Family:Ribosomal proteins L15p and L18e 51 d1p71a_ not modelled 15.7 28 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 52 d2axtu1 not modelled 14.1 29 Fold:SAM domain-like Superfamily:PsbU/PolX domain-like Family:PsbU-like 53 c2zkrl_ not modelled 13.1 6 PDB header:ribosomal protein/rna Chain: L: PDB Molecule:rna expansion segment es20; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 54 d1r6oc1 not modelled 12.6 16 Fold:ClpS-like Superfamily:ClpS-like Family:Adaptor protein ClpS (YljA) 55 d1y7ta2 not modelled 12.3 17 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 56 c1in0B_ not modelled 11.8 24 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:yajq protein; PDBTitle: yajq protein (hi1034) 57 d1b8za_ not modelled 11.3 24 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 58 c3izct_ not modelled 10.8 25 PDB header:ribosome Chain: T: PDB Molecule:60s ribosomal protein rpl19 (l19e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 59 d1spbp_ not modelled 10.4 27 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 60 d2o8ra3 not modelled 10.2 15 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 61 d2j01p1 not modelled 9.8 25 Fold:Ribosomal proteins L15p and L18e Superfamily:Ribosomal proteins L15p and L18e Family:Ribosomal proteins L15p and L18e 62 d2zjri1 not modelled 9.7 44 Fold:Ribosomal proteins L15p and L18e Superfamily:Ribosomal proteins L15p and L18e Family:Ribosomal proteins L15p and L18e 63 d1v5ib1 not modelled 9.6 24 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 64 c2jw5A_ not modelled 8.6 20 PDB header:protein binding Chain: A: PDB Molecule:dna polymerase lambda; PDBTitle: polymerase lambda brct domain 65 d1e0ea_ not modelled 8.1 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:N-terminal Zn binding domain of HIV integrase Family:N-terminal Zn binding domain of HIV integrase 66 c2dt5A_ not modelled 8.0 15 PDB header:dna binding protein Chain: A: PDB Molecule:at-rich dna-binding protein; PDBTitle: crystal structure of ttha1657 (at-rich dna-binding protein) from2 thermus thermophilus hb8 67 d1w5fa2 not modelled 7.8 9 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 68 d1ofua2 not modelled 7.8 16 Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain 69 d1szpa1 not modelled 7.7 21 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:DNA repair protein Rad51, N-terminal domain 70 d1wjfa_ not modelled 7.2 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:N-terminal Zn binding domain of HIV integrase Family:N-terminal Zn binding domain of HIV integrase 71 c3iz5t_ not modelled 7.1 31 PDB header:ribosome Chain: T: PDB Molecule:60s ribosomal protein l19 (l19e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 72 d1k6ya1 not modelled 6.8 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:N-terminal Zn binding domain of HIV integrase Family:N-terminal Zn binding domain of HIV integrase 73 d1kxpd3 not modelled 6.7 20 Fold:Serum albumin-like Superfamily:Serum albumin-like Family:Serum albumin-like 74 c3a1yF_ not modelled 6.7 53 PDB header:ribosomal protein Chain: F: PDB Molecule:50s ribosomal protein p1 (l12p); PDBTitle: the structure of protein complex 75 c3bsuF_ not modelled 6.3 29 PDB header:hydrolase/rna/dna Chain: F: PDB Molecule:ribonuclease h1; PDBTitle: hybrid-binding domain of human rnase h1 in complex with 12-2 mer rna/dna 76 c3d6zA_ not modelled 6.3 17 PDB header:transcription regulator/dna Chain: A: PDB Molecule:multidrug-efflux transporter 1 regulator; PDBTitle: crystal structure of r275e mutant of bmrr bound to dna and rhodamine 77 d1scjb_ not modelled 6.0 23 Fold:Ferredoxin-like Superfamily:Protease propeptides/inhibitors Family:Subtilase propeptides/inhibitors 78 c2o8rA_ not modelled 6.0 15 PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis 79 d1iqoa_ not modelled 5.9 50 Fold:Hypothetical protein MTH1880 Superfamily:Hypothetical protein MTH1880 Family:Hypothetical protein MTH1880 80 c2lbfA_ not modelled 5.9 25 PDB header:ribosomal protein Chain: A: PDB Molecule:60s acidic ribosomal protein p1; PDBTitle: solution structure of the dimerization domain of human ribosomal2 protein p1/p2 heterodimer 81 d1nh8a2 not modelled 5.8 26 Fold:Ferredoxin-like Superfamily:GlnB-like Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain 82 d1lghb_ not modelled 5.7 36 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 83 d2o97b1 not modelled 5.7 19 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 84 d1nxha_ not modelled 5.6 53 Fold:Hypothetical protein MTH393 Superfamily:Hypothetical protein MTH393 Family:Hypothetical protein MTH393 85 c2l9fA_ not modelled 5.5 29 PDB header:transferase Chain: A: PDB Molecule:cale8; PDBTitle: nmr solution structure of meacp 86 c2fvfA_ not modelled 5.3 33 PDB header:biosynthetic protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: structure of 10:0-acp (protein with docked fatty acid) 87 c3nohA_ not modelled 5.2 44 PDB header:peptide binding protein Chain: A: PDB Molecule:putative peptide binding protein; PDBTitle: crystal structure of a putative peptide binding protein (rumgna_00914)2 from ruminococcus gnavus atcc 29149 at 1.60 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0