Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	Q	H	Y	S	V	S	W	K	K	G	L	A	A	L	C	L	L	A	V	A	G	L	S	G	C	D	Q	Q	E	N	A	A	A	K	V	E	Y	D	G	L	S	N	S	Q	P	L	R	V	D	A	N	N	H	T	V	T	M	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	Q	I	N	G	R	F	L	T	D	D	T	R	H	G	I	V	F	K	D	G	S	N	G	H	K	S	L	F	M	G	Y	A	T	P	K	A	F	Y	E	A	L	K	E	A	G	G	T	P	G	E	N	M	T	M	D	N	K	E	T
Secondary structure
SS confidence
Disorder																				?	?					?																						?	?	?	?	?	?	?	?				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	H	V	T	G	S	K	L	D	I	S	V	N	W	Q	G	A	A	K	A	Y	S	F	D	E	V	I	V	D	S	N	G	K	K	L	D	M	R	F	G	G	N	L	T	A	A	E	E	K	K	T	G	C	L	V	C	L	D	S	C
Secondary structure
SS confidence
Disorder		?	?																?		?																											?	?	?											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Sequence		P	V	G	I	V	S	N	A	T	Y	T	Y	G	A	V	E	K	R	G	E	V	K	F	K	G	N	A	S	V	L	P	A	D	N	T	L	A	T	V	T	F	K	I	A	E
Secondary structure
SS confidence
Disorder		?														?	?	?	?									?																	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1sa8 chain A Region: 120 - 176 Aligned: 55 Modelled: 57 Confidence: 29.2% Identity: 11% Fold: Lipocalins Superfamily: Lipocalins Family: Fatty acid binding protein-like Phyre2 PDB 2cbr chain A Region: 120 - 176 Aligned: 54 Modelled: 57 Confidence: 26.4% Identity: 17% Fold: Lipocalins Superfamily: Lipocalins Family: Fatty acid binding protein-like Phyre2 PDB 1hms chain A Region: 120 - 176 Aligned: 53 Modelled: 55 Confidence: 26.3% Identity: 19% Fold: Lipocalins Superfamily: Lipocalins Family: Fatty acid binding protein-like Phyre2 PDB 2fs6 chain A domain 1 Region: 120 - 176 Aligned: 57 Modelled: 57 Confidence: 21.1% Identity: 12% Fold: Lipocalins Superfamily: Lipocalins Family: Fatty acid binding protein-like Phyre2 PDB 2r48 chain A domain 1 Region: 174 - 184 Aligned: 11 Modelled: 11 Confidence: 20.6% Identity: 55% Fold: Phosphotyrosine protein phosphatases I-like Superfamily: PTS system IIB component-like Family: PTS system, Fructose specific IIB subunit-like Phyre2 PDB 2gmh chain A Region: 172 - 206 Aligned: 30 Modelled: 35 Confidence: 19.3% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone Phyre2 PDB 1u8c chain B Region: 105 - 160 Aligned: 55 Modelled: 56 Confidence: 19.1% Identity: 15% PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: a novel adaptation of the integrin psi domain revealed from its2 crystal structure Phyre2 PDB 3k6s chain B Region: 105 - 132 Aligned: 27 Modelled: 28 Confidence: 18.3% Identity: 15% PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-2; PDBTitle: structure of integrin alphaxbeta2 ectodomain Phyre2 PDB 1hfe chain L domain 2 Region: 171 - 189 Aligned: 19 Modelled: 19 Confidence: 16.5% Identity: 32% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Ferredoxin domains from multidomain proteins Phyre2 PDB 1nij chain A Region: 126 - 176 Aligned: 51 Modelled: 51 Confidence: 16.4% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yjia; PDBTitle: yjia protein Phyre2 PDB 1fca chain A Region: 171 - 186 Aligned: 16 Modelled: 16 Confidence: 15.5% Identity: 38% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 1blu chain A Region: 171 - 186 Aligned: 16 Modelled: 16 Confidence: 15.2% Identity: 44% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 2c3y chain A Region: 171 - 183 Aligned: 13 Modelled: 13 Confidence: 15.1% Identity: 46% PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus Phyre2 PDB 2kyr chain A Region: 174 - 184 Aligned: 11 Modelled: 11 Confidence: 15.1% Identity: 45% PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 Phyre2 PDB 1dur chain A Region: 171 - 186 Aligned: 16 Modelled: 16 Confidence: 14.8% Identity: 31% Fold: Ferredoxin-like Superfamily: 4Fe-4S ferredoxins Family: Short-chain ferredoxins Phyre2 PDB 1lfo chain A Region: 114 - 176 Aligned: 56 Modelled: 63 Confidence: 14.6% Identity: 25% Fold: Lipocalins Superfamily: Lipocalins Family: Fatty acid binding protein-like Phyre2 PDB 1pmp chain A Region: 120 - 176 Aligned: 53 Modelled: 55 Confidence: 14.3% Identity: 15% Fold: Lipocalins Superfamily: Lipocalins Family: Fatty acid binding protein-like Phyre2 PDB 1yiv chain A domain 1 Region: 120 - 176 Aligned: 53 Modelled: 55 Confidence: 14.2% Identity: 17% Fold: Lipocalins Superfamily: Lipocalins Family: Fatty acid binding protein-like Phyre2 PDB 1bwy chain A Region: 120 - 176 Aligned: 53 Modelled: 57 Confidence: 13.7% Identity: 17% Fold: Lipocalins Superfamily: Lipocalins Family: Fatty acid binding protein-like Phyre2 PDB 2hnx chain A domain 1 Region: 120 - 176 Aligned: 53 Modelled: 55 Confidence: 13.6% Identity: 8% Fold: Lipocalins Superfamily: Lipocalins Family: Fatty acid binding protein-like Phyre2 1 d1sa8a_ 2 d2cbra_ 3 d1hmsa_ 4 d2fs6a1 5 d2r48a1 6 c2gmhA_ 7 c1u8cB_ 8 c3k6sB_ 9 d1hfel2 10 c1nijA_ 11 d1fcaa_ 12 d1blua_ 13 c2c3yA_ 14 c2kyrA_ 15 d1dura_ 16 d1lfoa_ 17 d1pmpa_ 18 d1yiva1 19 d1bwya_ 20 d2hnxa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1sa8a_ 29.2 11 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 2 d2cbra_ 26.4 17 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 3 d1hmsa_ 26.3 19 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 4 d2fs6a1 21.1 12 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 5 d2r48a1 20.6 55 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 6 c2gmhA_ 19.3 17 PDB header:oxidoreductase Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone 7 c1u8cB_ 19.1 15 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: a novel adaptation of the integrin psi domain revealed from its2 crystal structure 8 c3k6sB_ 18.3 15 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-2; PDBTitle: structure of integrin alphaxbeta2 ectodomain 9 d1hfel2 16.5 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 10 c1nijA_ 16.4 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yjia; PDBTitle: yjia protein 11 d1fcaa_ 15.5 38 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 12 d1blua_ 15.2 44 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 13 c2c3yA_ 15.1 46 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus 14 c2kyrA_ 15.1 45 PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544 15 d1dura_ 14.8 31 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 16 d1lfoa_ 14.6 25 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 17 d1pmpa_ 14.3 15 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 18 d1yiva1 14.2 17 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 19 d1bwya_ 13.7 17 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 20 d2hnxa1 13.6 8 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 21 d1gtea5 not modelled 13.2 44 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 22 c2jz2A_ not modelled 13.1 43 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ssl0352 protein; PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42 23 d1ifca_ not modelled 12.8 11 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 24 c2lfeA_ not modelled 12.5 14 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hecw2; PDBTitle: solution nmr structure of n-terminal domain of human e3 ubiquitin-2 protein ligase hecw2, northeast structural genomics consortium (nesg)3 target ht6306a 25 d1kzwa_ not modelled 12.4 11 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 26 d1kqwa_ not modelled 11.5 20 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 27 c3fcuB_ not modelled 11.1 13 PDB header:cell adhesion/blood clotting Chain: B: PDB Molecule:integrin beta-3; PDBTitle: structure of headpiece of integrin aiibb3 in open conformation 28 d2fdna_ not modelled 11.1 38 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 29 d1fdqa_ not modelled 11.0 13 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 30 d1jb0c_ not modelled 10.8 21 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 31 d2gpia1 not modelled 10.8 19 Fold:Shew3726-like Superfamily:Shew3726-like Family:Shew3726-like 32 d1b56a_ not modelled 10.8 15 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 33 d2r4qa1 not modelled 10.6 31 Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like 34 d7fd1a_ not modelled 10.6 27 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 35 d1mdca_ not modelled 10.4 9 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 36 c2fugG_ not modelled 10.1 18 PDB header:oxidoreductase Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 37 d1udxa3 not modelled 10.0 25 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 38 d1gsma1 not modelled 10.0 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 39 d2f1na1 not modelled 9.9 24 Fold:DNase I-like Superfamily:DNase I-like Family:DNase I-like 40 c3dsoA_ not modelled 9.7 28 PDB header:metal binding protein Chain: A: PDB Molecule:putative uncharacterized protein copk; PDBTitle: crystal structure of cu(i) bound copper resistance protein copk 41 d2fug91 not modelled 9.6 18 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 42 d1p6pa_ not modelled 9.6 18 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 43 c2v4jE_ not modelled 9.6 16 PDB header:oxidoreductase Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration 44 c2q9sA_ not modelled 9.5 9 PDB header:lipid binding protein Chain: A: PDB Molecule:fatty acid-binding protein; PDBTitle: linoleic acid bound to fatty acid binding protein 4 45 c2lbaA_ not modelled 9.5 24 PDB header:lipid binding protein Chain: A: PDB Molecule:babp protein; PDBTitle: solution structure of chicken ileal babp in complex with2 glycochenodeoxycholic acid 46 d2f73a1 not modelled 9.1 26 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 47 d1clfa_ not modelled 9.1 38 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 48 c2zvsB_ not modelled 8.6 31 PDB header:electron transport Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl; PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli 49 d2c42a5 not modelled 8.5 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 50 d2i9ua1 not modelled 8.5 21 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:SAH/MTA deaminase-like 51 c1gthD_ not modelled 8.5 44 PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil 52 d1vyfa_ not modelled 8.4 9 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 53 c2vpyB_ not modelled 8.4 27 PDB header:oxidoreductase Chain: B: PDB Molecule:nrfc protein; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp) 54 d1vlfn2 not modelled 8.1 38 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 55 d1nekb1 not modelled 8.0 29 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 56 c1gx7A_ not modelled 8.0 31 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit; PDBTitle: best model of the electron transfer complex between2 cytochrome c3 and [fe]-hydrogenase 57 d1tw4a_ not modelled 7.9 20 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 58 d1a57a_ not modelled 7.9 11 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 59 d1g7na_ not modelled 7.7 13 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 60 d3c7bb1 not modelled 7.7 25 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 61 c2kxvA_ not modelled 7.7 19 PDB header:unknown function Chain: A: PDB Molecule:tellurite resistance protein; PDBTitle: nmr structure and calcium-binding properties of the tellurite2 resistance protein terd from klebsiella pneumoniae 62 c2vdcF_ not modelled 7.4 47 PDB header:oxidoreductase Chain: F: PDB Molecule:glutamate synthase [nadph] large chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. 63 d1o1va_ not modelled 7.1 20 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 64 d3c8ya3 not modelled 7.0 32 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 65 d1h98a_ not modelled 6.9 31 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:7-Fe ferredoxin 66 c1lm1A_ not modelled 6.7 47 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin-dependent glutamate synthase; PDBTitle: structural studies on the synchronization of catalytic centers in2 glutamate synthase: native enzyme 67 c3pptA_ not modelled 6.7 17 PDB header:lipid binding protein Chain: A: PDB Molecule:sodium-calcium exchanger; PDBTitle: rep1-nxsq fatty acid transporter 68 c3v4pB_ not modelled 6.7 15 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-7; PDBTitle: crystal structure of a4b7 headpiece complexed with fab act-1 69 c3ef4A_ not modelled 6.6 14 PDB header:electron transport Chain: A: PDB Molecule:blue copper protein; PDBTitle: crystal structure of native pseudoazurin from2 hyphomicrobium denitrificans 70 d1h0hb_ not modelled 6.5 13 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 71 d1iqza_ not modelled 6.4 11 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Single 4Fe-4S cluster ferredoxin 72 c2bs2E_ not modelled 6.3 36 PDB header:oxidoreductase Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; PDBTitle: quinol:fumarate reductase from wolinella succinogenes 73 d1jnrb_ not modelled 6.1 20 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 74 d2bs2b1 not modelled 6.0 36 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 75 c3gyxJ_ not modelled 6.0 18 PDB header:oxidoreductase Chain: J: PDB Molecule:adenylylsulfate reductase; PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas 76 c3ibzA_ not modelled 5.9 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative tellurium resistant like protein terd; PDBTitle: crystal structure of putative tellurium resistant like protein (terd)2 from streptomyces coelicolor a3(2) 77 d2gmha3 not modelled 5.9 17 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:ETF-QO domain-like 78 d1eala_ not modelled 5.8 22 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 79 d1kf6b1 not modelled 5.7 29 Fold:Globin-like Superfamily:alpha-helical ferredoxin Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain 80 d1p9qc3 not modelled 5.7 29 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:Hypothetical protein AF0491, C-terminal domain 81 d1xera_ not modelled 5.6 31 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Archaeal ferredoxins 82 c1kqfB_ not modelled 5.6 40 PDB header:oxidoreductase Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur PDBTitle: formate dehydrogenase n from e. coli 83 d1crba_ not modelled 5.5 19 Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like 84 d2fug34 not modelled 5.4 29 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Ferredoxin domains from multidomain proteins 85 c2fgoA_ not modelled 5.3 44 PDB header:electron transport Chain: A: PDB Molecule:ferredoxin; PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa 86 d1rgva_ not modelled 5.3 31 Fold:Ferredoxin-like Superfamily:4Fe-4S ferredoxins Family:Short-chain ferredoxins 87 d1t95a3 not modelled 5.3 29 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:Hypothetical protein AF0491, C-terminal domain 88 c1ti2F_ not modelled 5.1 42 PDB header:oxidoreductase Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici 89 c1dwlA_ not modelled 5.1 33 PDB header:electron transfer Chain: A: PDB Molecule:ferredoxin i; PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0