Email l.a.kelley@imperial.ac.uk Description P39452 Date Thu Jan 5 12:00:51 GMT 2012 Unique Job ID ca69fe18963e570d

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1pemA_ 100.0 90 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 2 alpha PDBTitle: ribonucleotide reductase protein r1e from salmonella2 typhimurium 2 c3r1rB_ 100.0 23 PDB header:complex (oxidoreductase/peptide) Chain: B: PDB Molecule:ribonucleotide reductase r1 protein; PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli 3 c2wghA_ 100.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large PDBTitle: human ribonucleotide reductase r1 subunit (rrm1) in complex2 with datp and mg. 4 c3hnfA_ 100.0 28 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit; PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp 5 c2cvuA_ 100.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large chain PDBTitle: structures of yeast ribonucleotide reductase i 6 c1xjeA_ 100.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, b12-dependent; PDBTitle: structural mechanism of allosteric substrate specificity in a2 ribonucleotide reductase: dttp-gdp complex 7 d1rlra2 100.0 26 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain 8 d1peqa2 100.0 91 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:R1 subunit of ribonucleotide reductase, C-terminal domain 9 d1l1la_ 100.0 19 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:B12-dependent (class II) ribonucleotide reductase 10 d1peqa1 100.0 85 Fold:R1 subunit of ribonucleotide reductase, N-terminal domain Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain Family:R1 subunit of ribonucleotide reductase, N-terminal domain 11 d1rlra1 100.0 14 Fold:R1 subunit of ribonucleotide reductase, N-terminal domain Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain Family:R1 subunit of ribonucleotide reductase, N-terminal domain 12 d1hk8a_ 95.0 17 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 13 c1hk8A_ 95.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 14 d1h16a_ 76.3 14 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 15 c3pg6D_ 53.3 25 PDB header:ligase Chain: D: PDB Molecule:e3 ubiquitin-protein ligase dtx3l; PDBTitle: the carboxyl terminal domain of human deltex 3-like 16 d1qhma_ 32.3 14 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 17 d2okqa1 29.1 19 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YbaA-like 18 d1geqa_ 27.1 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 19 d1h3ob_ 22.9 13 Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs 20 d2ccqa1 22.4 16 Fold:PUG domain-like Superfamily:PUG domain-like Family:PUG domain 21 c2okqB_ not modelled 20.1 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein ybaa; PDBTitle: crystal structure of unknown conserved ybaa protein from2 shigella flexneri 22 d1jlia_ not modelled 15.7 22 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines 23 d1msza_ not modelled 13.8 17 Fold:IF3-like Superfamily:R3H domain Family:R3H domain 24 c1mszA_ not modelled 13.8 17 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein smubp-2; PDBTitle: solution structure of the r3h domain from human smubp-2 25 d2b4va2 not modelled 12.7 44 Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:RNA editing terminal uridyl transferase 2, RET2, catalytic domain 26 c3pe0B_ not modelled 12.7 24 PDB header:structural protein Chain: B: PDB Molecule:plectin; PDBTitle: structure of the central region of the plakin domain of plectin 27 d1v93a_ not modelled 12.1 16 Fold:TIM beta/alpha-barrel Superfamily:FAD-linked oxidoreductase Family:Methylenetetrahydrofolate reductase 28 c1pgjA_ not modelled 12.0 44 PDB header:oxidoreductase Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase; PDBTitle: x-ray structure of 6-phosphogluconate dehydrogenase from the protozoan2 parasite t. brucei 29 d1v74b_ not modelled 11.6 18 Fold:Four-helical up-and-down bundle Superfamily:Colicin D immunity protein Family:Colicin D immunity protein 30 d1vkna2 not modelled 10.9 14 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 31 c2iz1C_ not modelled 10.9 28 PDB header:oxidoreductase Chain: C: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating; PDBTitle: 6pdh complexed with pex inhibitor synchrotron data 32 d1ic8a2 not modelled 10.8 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:POU-specific domain 33 c3rcqA_ not modelled 10.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:aspartyl/asparaginyl beta-hydroxylase; PDBTitle: crystal structure of human aspartate beta-hydroxylase isoform a 34 c2v3sB_ not modelled 10.5 14 PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase osr1; PDBTitle: structural insights into the recognition of substrates and2 activators by the osr1 kinase 35 d2uyoa1 not modelled 10.3 14 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:ML2640-like 36 d1vmha_ not modelled 10.2 10 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 37 c2f3oB_ not modelled 10.1 18 PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus 38 d1vmfa_ not modelled 9.7 10 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 39 c2p4qA_ not modelled 9.5 44 PDB header:oxidoreductase Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating 1; PDBTitle: crystal structure analysis of gnd1 in saccharomyces cerevisiae 40 c3fwnB_ not modelled 9.2 28 PDB header:oxidoreductase Chain: B: PDB Molecule:6-phosphogluconate dehydrogenase, decarboxylating; PDBTitle: dimeric 6-phosphogluconate dehydrogenase complexed with 6-2 phosphogluconate and 2'-monophosphoadenosine-5'-diphosphate 41 d1vmja_ not modelled 9.2 20 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 42 d1j09a2 not modelled 8.9 15 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 43 d2d5ua1 not modelled 8.6 16 Fold:PUG domain-like Superfamily:PUG domain-like Family:PUG domain 44 c2p6hB_ not modelled 8.2 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of hypothetical protein ape1520 from aeropyrum2 pernix k1 45 d1r9da_ not modelled 7.7 17 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 46 d1gv2a2 not modelled 7.7 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 47 c1pgqA_ not modelled 7.6 39 PDB header:oxidoreductase (choh(d)-nadp+(a)) Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase; PDBTitle: crystallographic study of coenzyme, coenzyme analogue and substrate2 binding in 6-phosphogluconate dehydrogenase: implications for nadp3 specificity and the enzyme mechanism 48 c1idzA_ not modelled 7.3 21 PDB header:dna-binding protein Chain: A: PDB Molecule:mouse c-myb dna-binding domain repeat 3; PDBTitle: structure of myb transforming protein, nmr, 20 structures 49 c2xrgA_ not modelled 7.2 13 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family PDBTitle: crystal structure of autotaxin (enpp2) in complex with the2 ha155 boronic acid inhibitor 50 d1wiga2 not modelled 7.2 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 51 d2d0ob1 not modelled 7.1 16 Fold:Anticodon-binding domain-like Superfamily:B12-dependent dehydatase associated subunit Family:Dehydratase-reactivating factor beta subunit 52 c2p6cB_ not modelled 6.9 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:aq_2013 protein; PDBTitle: crystal structure of hypothetical protein aq_2013 from aquifex2 aeolicus vf5. 53 c3ng3A_ not modelled 6.9 31 PDB header:lyase Chain: A: PDB Molecule:deoxyribose-phosphate aldolase; PDBTitle: crystal structure of deoxyribose phosphate aldolase from mycobacterium2 avium 104 in a schiff base with an unknown aldehyde 54 d2csba2 not modelled 6.8 42 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 55 c3hm6X_ not modelled 6.8 16 PDB header:signaling protein Chain: X: PDB Molecule:plexin-b1; PDBTitle: crystal structure of the cytoplasmic domain of human plexin b1 56 d2b3wa1 not modelled 6.6 20 Fold:YbiA-like Superfamily:YbiA-like Family:YbiA-like 57 c2qlwA_ not modelled 6.4 27 PDB header:isomerase Chain: A: PDB Molecule:rhau; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum 58 c2qlxA_ not modelled 6.4 27 PDB header:isomerase Chain: A: PDB Molecule:l-rhamnose mutarotase; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose 59 d1vpha_ not modelled 6.3 16 Fold:YjbQ-like Superfamily:YjbQ-like Family:YjbQ-like 60 c2c1fA_ not modelled 6.3 24 PDB header:hydrolase Chain: A: PDB Molecule:bifunctional endo-1,4-beta-xylanase a; PDBTitle: the structure of the family 11 xylanase from neocallimastix2 patriciarum 61 d2g5ca2 not modelled 6.2 28 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 62 c3dzbA_ not modelled 6.0 32 PDB header:biosynthetic protein Chain: A: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 thermophilus 63 d1f0ya2 not modelled 6.0 33 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain 64 c3a9lB_ not modelled 6.0 15 PDB header:hydrolase Chain: B: PDB Molecule:poly-gamma-glutamate hydrolase; PDBTitle: structure of bacteriophage poly-gamma-glutamate hydrolase 65 c2is9A_ not modelled 5.9 24 PDB header:transcription Chain: A: PDB Molecule:defective in cullin neddylation protein 1; PDBTitle: structure of yeast dcn-1 66 d1mbja_ not modelled 5.8 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 67 c1mbjA_ not modelled 5.8 18 PDB header:dna binding protein Chain: A: PDB Molecule:myb proto-oncogene protein; PDBTitle: mouse c-myb dna-binding domain repeat 3 68 c1obfO_ not modelled 5.8 19 PDB header:glycolytic pathway Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase; PDBTitle: the crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from alcaligenes xylosoxidans at 1.73 resolution. 69 d1k3ta2 not modelled 5.7 22 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 70 d1jfla1 not modelled 5.7 32 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 71 d1h4ga_ not modelled 5.6 24 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12 72 d1f5ja_ not modelled 5.6 29 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12 73 c2jr7A_ not modelled 5.6 26 PDB header:metal binding protein Chain: A: PDB Molecule:dph3 homolog; PDBTitle: solution structure of human desr1 74 c3ivuB_ not modelled 5.6 11 PDB header:transferase Chain: B: PDB Molecule:homocitrate synthase, mitochondrial; PDBTitle: homocitrate synthase lys4 bound to 2-og 75 c3iymA_ not modelled 5.6 20 PDB header:virus Chain: A: PDB Molecule:capsid protein; PDBTitle: backbone trace of the capsid protein dimer of a fungal partitivirus2 from electron cryomicroscopy and homology modeling 76 d1x8da1 not modelled 5.5 27 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YiiL-like 77 d1te1b_ not modelled 5.4 29 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12 78 d1m4wa_ not modelled 5.4 29 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12 79 d1wgea1 not modelled 5.4 23 Fold:Rubredoxin-like Superfamily:CSL zinc finger Family:CSL zinc finger 80 d2awia2 not modelled 5.4 10 Fold:alpha-alpha superhelix Superfamily:TPR-like Family:PrgX C-terminal domain-like 81 d1xyna_ not modelled 5.4 24 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12 82 c2dcjA_ not modelled 5.4 24 PDB header:hydrolase Chain: A: PDB Molecule:xylanase j; PDBTitle: a two-domain structure of alkaliphilic xynj from bacillus sp. 41m-1 83 c2g5cD_ not modelled 5.2 26 PDB header:oxidoreductase Chain: D: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from aquifex aeolicus 84 c2kzuA_ not modelled 5.2 31 PDB header:apoptosis Chain: A: PDB Molecule:death-associated protein 6; PDBTitle: daxx helical bundle (dhb) domain / rassf1c complex 85 d1t6gc_ not modelled 5.1 18 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12 86 d1xi8a3 not modelled 5.1 28 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 87 d1at3a_ not modelled 5.1 40 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 88 d1igoa_ not modelled 5.1 18 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Xylanase/endoglucanase 11/12 89 c2p6uA_ not modelled 5.1 28 PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase 90 c2pv7B_ not modelled 5.0 28 PDB header:isomerase, oxidoreductase Chain: B: PDB Molecule:t-protein [includes: chorismate mutase (ec 5.4.99.5) (cm) PDBTitle: crystal structure of chorismate mutase / prephenate dehydrogenase2 (tyra) (1574749) from haemophilus influenzae rd at 2.00 a resolution