Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	Q	S	L	F	S	Q	P	L	N	V	I	N	V	G	I	A	M	F	S	D	D	L	K	K	Q	H	V	E	V	T	Q	L	D	W	T	P	P	G	Q	G	N	M	Q	V	V	Q	A	L	D	N	I	A	D	S	P	L	A	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																			?	?														?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	I	A	A	A	N	Q	Q	A	L	E	R	I	I	Q	S	H	P	V	L	I	G	F	D	Q	A	I	N	V	V	P	G	M	T	A	K	T	I	L	H	A	G	P	P	I	T	W	E	K	M	C	G	A	M	K	G	A	V	T	G
Secondary structure
SS confidence
Disorder		?																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	L	V	F	E	G	L	A	K	D	L	D	E	A	A	E	L	A	A	S	G	E	I	T	F	S	P	C	H	E	H	D	C	V	G	S	M	A	G	V	T	S	A	S	M	F	M	H	I	V	K	N	K	T	Y	G	N	I	A	Y
Secondary structure
SS confidence
Disorder																					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	N	M	S	E	Q	M	A	K	I	L	R	M	G	A	N	D	Q	S	V	I	D	R	L	N	W	M	R	D	V	Q	G	P	I	L	R	D	A	M	K	I	I	G	E	I	D	L	R	L	M	L	A	Q	A	L	H	M	G	D	E
Secondary structure
SS confidence
Disorder																																											?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		C	H	N	R	N	N	A	G	T	T	L	L	I	Q	A	L	T	P	G	I	I	Q	A	G	Y	S	V	E	Q	Q	R	E	V	F	E	F	V	A	S	S	D	Y	F	S	G	P	T	W	M	A	M	C	K	A	A	M	D	A	A	H
Secondary structure
SS confidence
Disorder																		?					?	?	?	?	?																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		G	I	E	Y	S	T	V	V	T	T	M	A	R	N	G	V	E	F	G	L	R	V	S	G	L	P	G	Q	W	F	T	G	P	A	Q	Q	V	I	G	P	M	F	A	G	Y	K	P	E	D	S	G	L	D	I	G	D	S	A	I	T
Secondary structure
SS confidence
Disorder			?	?																								?																							?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		E	T	Y	G	I	G	G	F	A	M	A	T	A	P	A	I	V	A	L	V	G	G	T	V	E	E	A	I	D	F	S	R	Q	M	R	E	I	T	L	G	E	N	P	N	V	T	I	P	L	L	G	F	M	G	V	P	S	A	I	D
Secondary structure
SS confidence
Disorder													?								?	?															?					?								?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Sequence		I	T	R	V	G	S	S	G	I	L	P	V	I	N	T	A	I	A	H	K	D	A	G	V	G	M	I	G	A	G	I	V	H	P	P	F	A	C	F	E	K	A	I	L	G	W	C	E	R	Y	G	V
Secondary structure
SS confidence
Disorder																			?		?	?	?	?	?	?																									?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3clq chain C Region: 58 - 470 Aligned: 413 Modelled: 413 Confidence: 100.0% Identity: 65% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a conserved protein of unknown function from2 enterococcus faecalis v583 Phyre2 PDB 1pdz chain A domain 2 Region: 252 - 303 Aligned: 51 Modelled: 52 Confidence: 74.3% Identity: 35% Fold: Enolase N-terminal domain-like Superfamily: Enolase N-terminal domain-like Family: Enolase N-terminal domain-like Phyre2 PDB 2akz chain A domain 2 Region: 252 - 300 Aligned: 49 Modelled: 49 Confidence: 68.4% Identity: 24% Fold: Enolase N-terminal domain-like Superfamily: Enolase N-terminal domain-like Family: Enolase N-terminal domain-like Phyre2 PDB 2al1 chain A domain 2 Region: 252 - 300 Aligned: 49 Modelled: 49 Confidence: 65.9% Identity: 22% Fold: Enolase N-terminal domain-like Superfamily: Enolase N-terminal domain-like Family: Enolase N-terminal domain-like Phyre2 PDB 1wo8 chain A domain 1 Region: 21 - 98 Aligned: 77 Modelled: 78 Confidence: 60.8% Identity: 19% Fold: Methylglyoxal synthase-like Superfamily: Methylglyoxal synthase-like Family: Methylglyoxal synthase, MgsA Phyre2 PDB 1vjt chain A Region: 361 - 435 Aligned: 58 Modelled: 74 Confidence: 51.7% Identity: 9% PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: crystal structure of alpha-glucosidase (tm0752) from thermotoga2 maritima at 2.50 a resolution Phyre2 PDB 2cqj chain A Region: 122 - 145 Aligned: 24 Modelled: 24 Confidence: 50.2% Identity: 17% PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog Phyre2 PDB 1alu chain A Region: 198 - 254 Aligned: 52 Modelled: 52 Confidence: 41.0% Identity: 15% Fold: 4-helical cytokines Superfamily: 4-helical cytokines Family: Long-chain cytokines Phyre2 PDB 2fym chain A domain 2 Region: 239 - 300 Aligned: 60 Modelled: 62 Confidence: 40.7% Identity: 15% Fold: Enolase N-terminal domain-like Superfamily: Enolase N-terminal domain-like Family: Enolase N-terminal domain-like Phyre2 PDB 2re2 chain A Region: 130 - 152 Aligned: 22 Modelled: 23 Confidence: 31.9% Identity: 32% PDB header:oxidoreductase Chain: A: PDB Molecule:uncharacterized protein ta1041; PDBTitle: crystal structure of a putative iron-molybdenum cofactor (femo-co)2 dinitrogenase (ta1041m) from thermoplasma acidophilum dsm 1728 at3 1.30 a resolution Phyre2 PDB 1h3f chain A domain 2 Region: 118 - 145 Aligned: 28 Modelled: 28 Confidence: 21.9% Identity: 21% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain Phyre2 PDB 1c06 chain A Region: 121 - 145 Aligned: 25 Modelled: 25 Confidence: 21.5% Identity: 36% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Ribosomal protein S4 Phyre2 PDB 2y9x chain G Region: 312 - 354 Aligned: 43 Modelled: 43 Confidence: 20.4% Identity: 30% PDB header:oxidoreductase Chain: G: PDB Molecule:lectin-like fold protein; PDBTitle: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in2 deoxy-form that contains additional unknown lectin-like subunit,3 with inhibitor tropolone Phyre2 PDB 2yvq chain A Region: 21 - 94 Aligned: 72 Modelled: 74 Confidence: 20.2% Identity: 18% PDB header:ligase Chain: A: PDB Molecule:carbamoyl-phosphate synthase; PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens Phyre2 PDB 2pw4 chain A domain 1 Region: 132 - 193 Aligned: 50 Modelled: 50 Confidence: 19.7% Identity: 18% Fold: Jann2411-like Superfamily: Jann2411-like Family: Jann2411-like Phyre2 PDB 1b93 chain A Region: 39 - 77 Aligned: 39 Modelled: 39 Confidence: 19.4% Identity: 23% Fold: Methylglyoxal synthase-like Superfamily: Methylglyoxal synthase-like Family: Methylglyoxal synthase, MgsA Phyre2 PDB 3hp7 chain A Region: 121 - 144 Aligned: 24 Modelled: 18 Confidence: 19.2% Identity: 17% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. Phyre2 PDB 2htm chain B Region: 406 - 470 Aligned: 52 Modelled: 65 Confidence: 17.0% Identity: 19% PDB header:biosynthetic protein Chain: B: PDB Molecule:thiazole biosynthesis protein thig; PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8 Phyre2 PDB 2l58 chain A Region: 231 - 245 Aligned: 15 Modelled: 15 Confidence: 16.6% Identity: 40% PDB header:apoptosis Chain: A: PDB Molecule:activator of apoptosis harakiri; PDBTitle: solution structure of the cytosolic fragment 22-53 of bcl-2 member2 harakiri Phyre2 PDB 2gy9 chain D domain 1 Region: 121 - 145 Aligned: 25 Modelled: 25 Confidence: 16.4% Identity: 24% Fold: Alpha-L RNA-binding motif Superfamily: Alpha-L RNA-binding motif Family: Ribosomal protein S4 Phyre2 1 c3clqC_ 2 d1pdza2 3 d2akza2 4 d2al1a2 5 d1wo8a1 6 c1vjtA_ 7 c2cqjA_ 8 d1alua_ 9 d2fyma2 10 c2re2A_ 11 d1h3fa2 12 d1c06a_ 13 c2y9xG_ 14 c2yvqA_ 15 d2pw4a1 16 d1b93a_ 17 c3hp7A_ 18 c2htmB_ 19 c2l58A_ 20 d2gy9d1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3clqC_ 100.0 65 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a conserved protein of unknown function from2 enterococcus faecalis v583 2 d1pdza2 74.3 35 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 3 d2akza2 68.4 24 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 4 d2al1a2 65.9 22 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 5 d1wo8a1 60.8 19 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA 6 c1vjtA_ 51.7 9 PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: crystal structure of alpha-glucosidase (tm0752) from thermotoga2 maritima at 2.50 a resolution 7 c2cqjA_ 50.2 17 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 8 d1alua_ 41.0 15 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Long-chain cytokines 9 d2fyma2 40.7 15 Fold:Enolase N-terminal domain-like Superfamily:Enolase N-terminal domain-like Family:Enolase N-terminal domain-like 10 c2re2A_ 31.9 32 PDB header:oxidoreductase Chain: A: PDB Molecule:uncharacterized protein ta1041; PDBTitle: crystal structure of a putative iron-molybdenum cofactor (femo-co)2 dinitrogenase (ta1041m) from thermoplasma acidophilum dsm 1728 at3 1.30 a resolution 11 d1h3fa2 21.9 21 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 12 d1c06a_ 21.5 36 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 13 c2y9xG_ 20.4 30 PDB header:oxidoreductase Chain: G: PDB Molecule:lectin-like fold protein; PDBTitle: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in2 deoxy-form that contains additional unknown lectin-like subunit,3 with inhibitor tropolone 14 c2yvqA_ 20.2 18 PDB header:ligase Chain: A: PDB Molecule:carbamoyl-phosphate synthase; PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens 15 d2pw4a1 19.7 18 Fold:Jann2411-like Superfamily:Jann2411-like Family:Jann2411-like 16 d1b93a_ 19.4 23 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA 17 c3hp7A_ 19.2 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. 18 c2htmB_ 17.0 19 PDB header:biosynthetic protein Chain: B: PDB Molecule:thiazole biosynthesis protein thig; PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8 19 c2l58A_ 16.6 40 PDB header:apoptosis Chain: A: PDB Molecule:activator of apoptosis harakiri; PDBTitle: solution structure of the cytosolic fragment 22-53 of bcl-2 member2 harakiri 20 d2gy9d1 16.4 24 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 21 d1twda_ not modelled 12.7 17 Fold:TIM beta/alpha-barrel Superfamily:CutC-like Family:CutC-like 22 d1nuba2 not modelled 11.7 50 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:EGF/Laminin Family:Follistatin (FS) module N-terminal domain, FS-N 23 c2xzmD_ not modelled 11.6 18 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 24 c2ldkA_ not modelled 11.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein aaur_3427 from arthrobacter2 aurescens, northeast structural genomics consortium target aar96 25 d1jh3a_ not modelled 10.5 25 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 26 d3cuma1 not modelled 10.2 19 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain 27 c3msuA_ not modelled 10.0 20 PDB header:transferase Chain: A: PDB Molecule:citrate synthase; PDBTitle: crystal structure of citrate synthase from francisella tularensis 28 c3d0jA_ not modelled 9.9 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ca_c3497; PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824 29 c2d5nB_ not modelled 9.8 17 PDB header:hydrolase, oxidoreductase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis 30 d2hsja1 not modelled 9.8 18 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:Acetylhydrolase 31 c2bibA_ not modelled 9.8 17 PDB header:hydrolase Chain: A: PDB Molecule:teichoic acid phosphorylcholine esterase/ choline binding PDBTitle: crystal structure of the complete modular teichioic acid2 phosphorylcholine esterase pce (cbpe) from streptococcus3 pneumoniae 32 c3iefA_ not modelled 9.8 33 PDB header:transferase, rna binding protein Chain: A: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna guanine-n1-methyltransferase from2 bartonella henselae using mpcs. 33 d2o34a1 not modelled 9.7 57 Fold:T-fold Superfamily:ApbE-like Family:DVU1097-like 34 c2bs5A_ not modelled 9.4 25 PDB header:sugar binding protein Chain: A: PDB Molecule:fucose-binding lectin protein; PDBTitle: lectin from ralstonia solanacearum complexed with 2-2 fucosyllactose 35 d1p9ka_ not modelled 8.6 24 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 36 c1u8xX_ not modelled 8.4 21 PDB header:hydrolase Chain: X: PDB Molecule:maltose-6'-phosphate glucosidase; PDBTitle: crystal structure of glva from bacillus subtilis, a metal-requiring,2 nad-dependent 6-phospho-alpha-glucosidase 37 c3fefB_ not modelled 8.3 24 PDB header:hydrolase Chain: B: PDB Molecule:putative glucosidase lpld; PDBTitle: crystal structure of putative glucosidase lpld from2 bacillus subtilis 38 d1vmda_ not modelled 8.3 19 Fold:Methylglyoxal synthase-like Superfamily:Methylglyoxal synthase-like Family:Methylglyoxal synthase, MgsA 39 d2isba1 not modelled 7.8 17 Fold:The "swivelling" beta/beta/alpha domain Superfamily:FumA C-terminal domain-like Family:FumA C-terminal domain-like 40 d1vjta1 not modelled 7.7 7 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 41 c3n5mD_ not modelled 7.4 20 PDB header:transferase Chain: D: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystals structure of a bacillus anthracis aminotransferase 42 d2uubd1 not modelled 7.3 35 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 43 c2i7uA_ not modelled 7.2 43 PDB header:de novo protein/ligand binding protein Chain: A: PDB Molecule:four-alpha-helix bundle; PDBTitle: structural and dynamical analysis of a four-alpha-helix2 bundle with designed anesthetic binding pockets 44 d1vk4a_ not modelled 7.0 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 45 c1s1hD_ not modelled 6.8 32 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s9-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 46 d2jeka1 not modelled 6.5 32 Fold:Rv1873-like Superfamily:Rv1873-like Family:Rv1873-like 47 c2iunD_ not modelled 6.4 25 PDB header:viral protein Chain: D: PDB Molecule:avian adenovirus celo long fibre; PDBTitle: structure of the c-terminal head domain of the avian2 adenovirus celo long fibre (p21 crystal form) 48 c3bbnD_ not modelled 6.3 25 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 49 c1oy5B_ not modelled 6.3 32 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(1)-)-methyltransferase; PDBTitle: crystal structure of trna (m1g37) methyltransferase from aquifex2 aeolicus 50 d1oy5a_ not modelled 6.3 32 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:tRNA(m1G37)-methyltransferase TrmD 51 c1s6yA_ not modelled 6.3 31 PDB header:hydrolase Chain: A: PDB Molecule:6-phospho-beta-glucosidase; PDBTitle: 2.3a crystal structure of phospho-beta-glucosidase 52 d1s4da_ not modelled 6.1 19 Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase 53 c2k4mA_ not modelled 6.1 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0146 protein mth_1000; PDBTitle: solution nmr structure of m. thermoautotrophicum protein2 mth_1000, northeast structural genomics consortium target3 tr8 54 c3btpA_ not modelled 6.0 43 PDB header:dna binding protein, chaperone Chain: A: PDB Molecule:single-strand dna-binding protein; PDBTitle: crystal structure of agrobacterium tumefaciens vire2 in complex with2 its chaperone vire1: a novel fold and implications for dna binding 55 c3brtC_ not modelled 5.9 33 PDB header:transferase/transcription Chain: C: PDB Molecule:inhibitor of nuclear factor kappa-b kinase PDBTitle: nemo/ikk association domain structure 56 c2akmA_ not modelled 5.9 23 PDB header:lyase Chain: A: PDB Molecule:gamma enolase; PDBTitle: fluoride inhibition of enolase: crystal structure of the2 inhibitory complex 57 d1t6la2 not modelled 5.8 56 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 58 c3p04A_ not modelled 5.8 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 59 c3bboG_ not modelled 5.7 46 PDB header:ribosome Chain: G: PDB Molecule:ribosomal protein l4; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 60 c2q7aA_ not modelled 5.5 43 PDB header:heme binding protein Chain: A: PDB Molecule:cell surface heme-binding protein; PDBTitle: crystal structure of the cell surface heme transfer protein shp 61 c2w40C_ not modelled 5.4 18 PDB header:transferase Chain: C: PDB Molecule:glycerol kinase, putative; PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol 62 d1a7ha_ not modelled 5.3 23 Fold:gamma-Crystallin-like Superfamily:gamma-Crystallin-like Family:Crystallins/Ca-binding development proteins 63 d1s0aa_ not modelled 5.3 32 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 64 c3fd0B_ not modelled 5.1 20 PDB header:lyase Chain: B: PDB Molecule:putative cystathionine beta-lyase involved in aluminum PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_470671.1) from listeria innocua at 2.12 a3 resolution 65 d2cr9a1 not modelled 5.1 21 Fold:WGR domain-like Superfamily:WGR domain-like Family:WGR domain 66 c2lf2A_ not modelled 5.1 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the ahsa1-like protein chu_1110 from2 cytophaga hutchinsonii, northeast structural genomics consortium3 target chr152

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0