Email l.a.kelley@imperial.ac.uk Description Q47153 Date Thu Jan 5 12:36:28 GMT 2012 Unique Job ID c18938ce66e63c20

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3a5iB_ 100.0 32 PDB header:protein transport Chain: B: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: structure of the cytoplasmic domain of flha 2 c3mydA_ 100.0 31 PDB header:protein transport Chain: A: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: structure of the cytoplasmic domain of flha from helicobacter pylori 3 c2x49A_ 100.0 20 PDB header:protein transport Chain: A: PDB Molecule:invasion protein inva; PDBTitle: crystal structure of the c-terminal domain of inva 4 c3mixA_ 100.0 31 PDB header:protein transport Chain: A: PDB Molecule:flagellar biosynthesis protein flha; PDBTitle: crystal structure of the cytosolic domain of b. subtilis flha 5 c3lw9B_ 100.0 16 PDB header:protein transport Chain: B: PDB Molecule:invasion protein inva; PDBTitle: structure of a cytoplasmic domain of salmonella inva 6 c3pl4A_ 53.7 10 PDB header:motor protein Chain: A: PDB Molecule:flagellar motor switch protein; PDBTitle: crystal structure of flig (residue 116-343) from h. pylori 7 d1lm5a_ 49.0 16 Fold:beta-hairpin-alpha-hairpin repeat Superfamily:Plakin repeat Family:Plakin repeat 8 c2jobA_ 41.8 38 PDB header:lipid binding protein Chain: A: PDB Molecule:antilipopolysaccharide factor; PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site 9 d1wi9a_ 36.8 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 10 d1jhna4 35.2 11 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Calnexin/calreticulin 11 c3t6kB_ 32.8 17 PDB header:signaling protein Chain: B: PDB Molecule:response regulator receiver; PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution 12 c1vj7B_ 30.7 17 PDB header:hydrolase, transferase Chain: B: PDB Molecule:bifunctional rela/spot; PDBTitle: crystal structure of the bifunctional catalytic fragment of relseq,2 the rela/spot homolog from streptococcus equisimilis. 13 c3mtuD_ 29.6 23 PDB header:contractile protein Chain: D: PDB Molecule:tropomyosin alpha-1 chain, microtubule-associated protein PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle 14 d2f2ea1 28.1 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:HxlR-like 15 d1pvda1 26.6 16 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 16 d2fswa1 26.6 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:HxlR-like 17 c3bhwA_ 26.3 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from magnetospirillum2 magneticum 18 d1zpda1 26.1 21 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 19 c2peoA_ 24.4 19 PDB header:chaperone Chain: A: PDB Molecule:rbcx protein; PDBTitle: crystal structure of rbcx from anabaena ca 20 d2peoa1 24.4 19 Fold:RbcX-like Superfamily:RbcX-like Family:RbcX-like 21 c4a5mH_ not modelled 24.2 14 PDB header:transcription Chain: H: PDB Molecule:uncharacterized hth-type transcriptional regulator yybr; PDBTitle: redox regulator hypr in its oxidized form 22 c3hjlA_ not modelled 23.9 15 PDB header:proton transport Chain: A: PDB Molecule:flagellar motor switch protein flig; PDBTitle: the structure of full-length flig from aquifex aeolicus 23 c2o2fA_ not modelled 23.8 12 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis regulator bcl-2; PDBTitle: solution structure of the anti-apoptotic protein bcl-2 in2 complex with an acyl-sulfonamide-based ligand 24 c2lkyA_ not modelled 23.5 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b 25 c2q2kA_ not modelled 22.8 41 PDB header:dna binding protein/dna Chain: A: PDB Molecule:hypothetical protein; PDBTitle: structure of nucleic-acid binding protein 26 c3pihA_ not modelled 22.1 14 PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna 27 c3rg0A_ not modelled 21.0 17 PDB header:chaperone Chain: A: PDB Molecule:calreticulin; PDBTitle: structural and functional relationships between the lectin and arm2 domains of calreticulin 28 c2kvcA_ not modelled 20.6 19 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a 29 c3kmgE_ not modelled 20.0 28 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator-1; PDBTitle: the x-ray crystal structure of ppar-gamma in complex with an indole2 derivative modulator, gsk538, and an src-1 peptide 30 d1orna_ not modelled 19.9 12 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:Endonuclease III 31 c1t98B_ not modelled 19.7 20 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of mukf(1-287) 32 c1zcjA_ not modelled 19.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxisomal bifunctional enzyme; PDBTitle: crystal structure of 3-hydroxyacyl-coa dehydrogenase 33 c1t6sB_ not modelled 19.2 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a conserved hypothetical protein from chlorobium2 tepidum 34 c3pkrA_ not modelled 19.0 10 PDB header:motor protein Chain: A: PDB Molecule:flagellar motor switch protein; PDBTitle: crystal structure of flig (residue 86-343) from h. pylori 35 c1b35D_ not modelled 17.2 22 PDB header:virus Chain: D: PDB Molecule:protein (cricket paralysis virus, vp4); PDBTitle: cricket paralysis virus (crpv) 36 d1qhma_ not modelled 16.7 44 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 37 c2z99A_ not modelled 15.3 9 PDB header:cell cycle Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of scpb from mycobacterium tuberculosis 38 d2h9fa2 not modelled 15.3 18 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PA0793-like 39 c3a11D_ not modelled 15.0 9 PDB header:isomerase Chain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1 40 c2hfpB_ not modelled 14.9 38 PDB header:transcription Chain: B: PDB Molecule:src peptide fragment; PDBTitle: crystal structure of ppar gamma with n-sulfonyl-2-indole2 carboxamide ligands 41 c3cfyA_ not modelled 14.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus 42 d1ovma1 not modelled 14.8 14 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 43 c2cdqB_ not modelled 14.8 8 PDB header:transferase Chain: B: PDB Molecule:aspartokinase; PDBTitle: crystal structure of arabidopsis thaliana aspartate kinase2 complexed with lysine and s-adenosylmethionine 44 c3df8A_ not modelled 14.7 13 PDB header:transcription Chain: A: PDB Molecule:possible hxlr family transcriptional factor; PDBTitle: the crystal structure of a possible hxlr family transcriptional factor2 from thermoplasma volcanium gss1 45 c1k74E_ not modelled 14.7 38 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.3 angstrom resolution crystal structure of the2 heterodimer of the human ppargamma and rxralpha ligand3 binding domains respectively bound with gw409544 and 9-cis4 retinoic acid and co-activator peptides. 46 c1fm6E_ not modelled 14.7 38 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and rosiglitazone and co-activator peptides. 47 c1fm9E_ not modelled 14.7 38 PDB header:transcription Chain: E: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and gi262570 and co-activator peptides. 48 c1fm6V_ not modelled 14.4 38 PDB header:transcription Chain: V: PDB Molecule:steroid receptor coactivator; PDBTitle: the 2.1 angstrom resolution crystal structure of the2 heterodimer of the human rxralpha and ppargamma ligand3 binding domains respectively bound with 9-cis retinoic4 acid and rosiglitazone and co-activator peptides. 49 d1wpga4 not modelled 14.3 22 Fold:Calcium ATPase, transmembrane domain M Superfamily:Calcium ATPase, transmembrane domain M Family:Calcium ATPase, transmembrane domain M 50 c3s93B_ not modelled 14.0 16 PDB header:transcription Chain: B: PDB Molecule:tudor domain-containing protein 5; PDBTitle: crystal structure of conserved motif in tdrd5 51 c3m65A_ not modelled 13.8 11 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent protease la 1; PDBTitle: crystal structure of bacillus subtilis lon n-terminal domain 52 d1h16a_ not modelled 13.6 44 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:PFL-like 53 d1j6ra_ not modelled 12.4 10 Fold:Methionine synthase activation domain-like Superfamily:Methionine synthase activation domain-like Family:Hypothetical protein TM0269 54 c1p8dC_ not modelled 12.2 31 PDB header:membrane protein/protein binding Chain: C: PDB Molecule:nuclear receptor coactivator 1 isoform 3; PDBTitle: x-ray crystal structure of lxr ligand binding domain with 24(s),25-2 epoxycholesterol 55 d1niga_ not modelled 12.2 18 Fold:Ferritin-like Superfamily:Cobalamin adenosyltransferase-like Family:Hypothetical protein Ta1238 56 d1a68a_ not modelled 12.2 25 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 57 c3dnfB_ not modelled 12.1 17 PDB header:oxidoreductase Chain: B: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PDBTitle: structure of (e)-4-hydroxy-3-methyl-but-2-enyl diphosphate reductase,2 the terminal enzyme of the non-mevalonate pathway 58 c3ol4B_ not modelled 12.0 14 PDB header:unknown function Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c 59 c2ka1A_ not modelled 12.0 86 PDB header:membrane protein Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles 60 c2ka2B_ not modelled 12.0 86 PDB header:membrane protein Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints 61 c2ka1B_ not modelled 12.0 86 PDB header:membrane protein Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles 62 c2ka2A_ not modelled 12.0 86 PDB header:membrane protein Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints 63 c2oviA_ not modelled 11.7 13 PDB header:ligand binding protein, metal transport Chain: A: PDB Molecule:hypothetical protein chux; PDBTitle: structure of the heme binding protein chux 64 c2prgC_ not modelled 11.5 38 PDB header:complex (thiazolidinedione/receptor) Chain: C: PDB Molecule:nuclear receptor coactivator src-1; PDBTitle: ligand-binding domain of the human peroxisome proliferator2 activated receptor gamma 65 c1cpbA_ not modelled 11.3 24 PDB header:hydrolase (c-terminal peptidase) Chain: A: PDB Molecule:carboxypeptidase b; PDBTitle: structure of carboxypeptidase b at 2.8 angstroms resolution 66 d1wfra_ not modelled 11.1 27 Fold:SCP-like Superfamily:SCP-like Family:Sterol carrier protein, SCP 67 c1nw3A_ not modelled 11.1 23 PDB header:transferase Chain: A: PDB Molecule:histone methyltransferase dot1l; PDBTitle: structure of the catalytic domain of human dot1l, a non-set2 domain nucleosomal histone methyltransferase 68 d1nw3a_ not modelled 11.1 23 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Catalytic, N-terminal domain of histone methyltransferase Dot1l 69 c2q9qF_ not modelled 11.0 12 PDB header:replication Chain: F: PDB Molecule:gins complex subunit 4; PDBTitle: the crystal structure of full length human gins complex 70 d1ugpa_ not modelled 11.0 16 Fold:Nitrile hydratase alpha chain Superfamily:Nitrile hydratase alpha chain Family:Nitrile hydratase alpha chain 71 c3ke8A_ not modelled 10.9 17 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-enyl diphosphate PDBTitle: crystal structure of isph:hmbpp-complex 72 d1ckqa_ not modelled 10.6 13 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRI 73 d1zh2a1 not modelled 10.6 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 74 d2a9ha1 not modelled 10.6 19 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 75 d3b60a2 not modelled 10.4 5 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 76 d1r2za1 not modelled 10.3 12 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 77 d1dsxa_ not modelled 10.0 27 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 78 c3gz6A_ not modelled 9.9 15 PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna 79 d2iuba2 not modelled 9.7 17 Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region 80 c3nvtA_ not modelled 9.5 15 PDB header:transferase/isomerase Chain: A: PDB Molecule:3-deoxy-d-arabino-heptulosonate 7-phosphate synthase; PDBTitle: 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7-2 phosphoheptulonate synthase/chorismate mutase (aroa) from listeria3 monocytogenes egd-e 81 d1r3jc_ not modelled 9.2 17 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 82 d2e9xd1 not modelled 9.0 10 Fold:GINS helical bundle-like Superfamily:GINS helical bundle-like Family:SLD5 N-terminal domain-like 83 c2yujA_ not modelled 8.9 27 PDB header:protein binding Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like; PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1 84 c2rmrA_ not modelled 8.9 11 PDB header:transcription Chain: A: PDB Molecule:paired amphipathic helix protein sin3a; PDBTitle: solution structure of msin3a pah1 domain 85 c2f3oB_ not modelled 8.8 31 PDB header:unknown function Chain: B: PDB Molecule:pyruvate formate-lyase 2; PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus 86 d1jm6a1 not modelled 8.7 7 Fold:Bromodomain-like Superfamily:alpha-ketoacid dehydrogenase kinase, N-terminal domain Family:alpha-ketoacid dehydrogenase kinase, N-terminal domain 87 c1p8dD_ not modelled 8.7 45 PDB header:membrane protein/protein binding Chain: D: PDB Molecule:nuclear receptor coactivator 1 isoform 3; PDBTitle: x-ray crystal structure of lxr ligand binding domain with 24(s),25-2 epoxycholesterol 88 c2bbjB_ not modelled 8.7 20 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 89 c1j8yF_ not modelled 8.6 10 PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant 90 c3d4uA_ not modelled 8.5 13 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:carboxypeptidase b2; PDBTitle: bovine thrombin-activatable fibrinolysis inhibitor (tafia) in complex2 with tick-derived carboxypeptidase inhibitor. 91 c1mhsA_ not modelled 8.4 17 PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase 92 c2ejaB_ not modelled 8.4 11 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 aquifex aeolicus 93 d1b0na1 not modelled 8.4 25 Fold:Dimerisation interlock Superfamily:SinR repressor dimerisation domain-like Family:SinR repressor dimerisation domain-like 94 c2k1oA_ not modelled 8.3 21 PDB header:gene regulation Chain: A: PDB Molecule:putative; PDBTitle: nmr structure of helicobacter pylori jhp0511 (hp0564). 95 c1zc1A_ not modelled 8.2 13 PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites 96 c3k5wA_ not modelled 8.2 21 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori 97 c4ktqA_ not modelled 8.2 15 PDB header:transferase/dna Chain: A: PDB Molecule:protein (large fragment of dna polymerase i); PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna 98 d1lvaa3 not modelled 8.0 24 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 99 d1iuka_ not modelled 7.9 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain