Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	F	L	R	Q	E	D	F	A	T	V	V	R	S	T	P	L	V	S	L	D	F	I	V	E	N	S	R	G	E	F	L	L	G	K	R	T	N	R	P	A	Q	G	Y	W	F	V	P	G	G	R	V	Q	K	D	E	T	L	E	A
Secondary structure
SS confidence
Disorder		?	?	?	?																																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	F	E	R	L	T	M	A	E	L	G	L	R	L	P	I	T	A	G	Q	F	Y	G	V	W	Q	H	F	Y	D	D	N	F	S	G	T	D	F	T	T	H	Y	V	V	L	G	F	R	F	R	V	S	E	E	E	L	L	L	P	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Sequence		E	Q	H	D	D	Y	R	W	L	T	S	D	A	L	L	A	S	D	N	V	H	A	N	S	R	A	Y	F	L	A	E	K	R	T	G	V	P	G	L
Secondary structure
SS confidence
Disorder																																	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1rya chain A Region: 1 - 159 Aligned: 159 Modelled: 159 Confidence: 100.0% Identity: 100% Fold: Nudix Superfamily: Nudix Family: GDP-mannose mannosyl hydrolase NudD Phyre2 PDB 3gz8 chain C Region: 3 - 145 Aligned: 135 Modelled: 143 Confidence: 99.9% Identity: 19% PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose Phyre2 PDB 2qjo chain B Region: 6 - 138 Aligned: 132 Modelled: 133 Confidence: 99.9% Identity: 20% PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. Phyre2 PDB 3h95 chain A Region: 18 - 148 Aligned: 116 Modelled: 116 Confidence: 99.9% Identity: 16% PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 Phyre2 PDB 3cng chain C Region: 16 - 159 Aligned: 130 Modelled: 144 Confidence: 99.9% Identity: 24% PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea Phyre2 PDB 3grn chain B Region: 17 - 148 Aligned: 121 Modelled: 132 Confidence: 99.9% Identity: 24% PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 Phyre2 PDB 2r5w chain A Region: 6 - 136 Aligned: 130 Modelled: 131 Confidence: 99.9% Identity: 20% PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis Phyre2 PDB 2b0v chain A domain 1 Region: 16 - 152 Aligned: 128 Modelled: 137 Confidence: 99.9% Identity: 19% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2fb1 chain A domain 2 Region: 15 - 153 Aligned: 131 Modelled: 139 Confidence: 99.9% Identity: 24% Fold: Nudix Superfamily: Nudix Family: BT0354 N-terminal domain-like Phyre2 PDB 1sjy chain A Region: 19 - 159 Aligned: 134 Modelled: 141 Confidence: 99.9% Identity: 19% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2fb1 chain A Region: 15 - 155 Aligned: 133 Modelled: 141 Confidence: 99.9% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron Phyre2 PDB 2fml chain A domain 2 Region: 3 - 134 Aligned: 125 Modelled: 132 Confidence: 99.9% Identity: 22% Fold: Nudix Superfamily: Nudix Family: BT0354 N-terminal domain-like Phyre2 PDB 3q4i chain A Region: 15 - 159 Aligned: 135 Modelled: 145 Confidence: 99.9% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ Phyre2 PDB 3o8s chain A Region: 15 - 158 Aligned: 128 Modelled: 143 Confidence: 99.9% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution Phyre2 PDB 3n77 chain B Region: 15 - 148 Aligned: 133 Modelled: 134 Confidence: 99.9% Identity: 21% PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 Phyre2 PDB 3hhj chain A Region: 15 - 145 Aligned: 121 Modelled: 131 Confidence: 99.9% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae Phyre2 PDB 3gz6 chain A Region: 17 - 145 Aligned: 121 Modelled: 121 Confidence: 99.9% Identity: 21% PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna Phyre2 PDB 3dku chain B Region: 16 - 155 Aligned: 130 Modelled: 140 Confidence: 99.9% Identity: 23% PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 Phyre2 PDB 3exq chain A Region: 13 - 145 Aligned: 123 Modelled: 133 Confidence: 99.9% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis Phyre2 PDB 2fml chain B Region: 15 - 136 Aligned: 115 Modelled: 122 Confidence: 99.9% Identity: 22% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis Phyre2 1 d1ryaa_ 2 c3gz8C_ 3 c2qjoB_ 4 c3h95A_ 5 c3cngC_ 6 c3grnB_ 7 c2r5wA_ 8 d2b0va1 9 d2fb1a2 10 d1sjya_ 11 c2fb1A_ 12 d2fmla2 13 c3q4iA_ 14 c3o8sA_ 15 c3n77B_ 16 c3hhjA_ 17 c3gz6A_ 18 c3dkuB_ 19 c3exqA_ 20 c2fmlB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ryaa_ 100.0 100 Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD 2 c3gz8C_ 99.9 19 PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose 3 c2qjoB_ 99.9 20 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 4 c3h95A_ 99.9 16 PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 5 c3cngC_ 99.9 24 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 6 c3grnB_ 99.9 24 PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 7 c2r5wA_ 99.9 20 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 8 d2b0va1 99.9 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 9 d2fb1a2 99.9 24 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 10 d1sjya_ 99.9 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 11 c2fb1A_ 99.9 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 12 d2fmla2 99.9 22 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 13 c3q4iA_ 99.9 16 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 14 c3o8sA_ 99.9 16 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution 15 c3n77B_ 99.9 21 PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 16 c3hhjA_ 99.9 21 PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae 17 c3gz6A_ 99.9 21 PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna 18 c3dkuB_ 99.9 23 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 19 c3exqA_ 99.9 22 PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis 20 c2fmlB_ 99.9 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis 21 c3gg6A_ not modelled 99.9 18 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 22 c2kdvA_ not modelled 99.9 15 PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli 23 c3f6aA_ not modelled 99.9 14 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 24 c3edsA_ not modelled 99.9 19 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis 25 c2pq1B_ not modelled 99.9 17 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 26 c2yyhC_ not modelled 99.9 22 PDB header:hydrolase Chain: C: PDB Molecule:8-oxo-dgtpase domain; PDBTitle: crystal structure of nudix family protein from aquifex aeolicus 27 d1vcda1 not modelled 99.9 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 28 d2b06a1 not modelled 99.9 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 29 c3fk9B_ not modelled 99.9 21 PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans 30 d1vk6a2 not modelled 99.9 17 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 31 c2o1cB_ not modelled 99.9 21 PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase 32 c2gb5B_ not modelled 99.9 20 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 33 d1irya_ not modelled 99.9 23 Fold:Nudix Superfamily:Nudix Family:MutT-like 34 d1ppva_ not modelled 99.9 20 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 35 d2fvva1 not modelled 99.9 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 36 c2fvvA_ not modelled 99.9 17 PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1 37 c2pqvA_ not modelled 99.9 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae 38 c3r03B_ not modelled 99.9 24 PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum 39 d2fkba1 not modelled 99.8 24 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 40 c3ef5A_ not modelled 99.8 21 PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp 41 d1jkna_ not modelled 99.8 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 42 d1ktga_ not modelled 99.8 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 43 c3gwyA_ not modelled 99.8 20 PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis 44 c3sonB_ not modelled 99.8 14 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution 45 d2azwa1 not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 46 d1hzta_ not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 47 d1puna_ not modelled 99.8 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 48 c3fcmA_ not modelled 99.8 9 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 49 d1xsba_ not modelled 99.8 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 50 c2jvbA_ not modelled 99.8 14 PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 51 d1nqza_ not modelled 99.8 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 52 d1k2ea_ not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 53 d2o5fa1 not modelled 99.8 25 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 54 c3i9xA_ not modelled 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua 55 c2qkmF_ not modelled 99.8 15 PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex 56 d2a6ta2 not modelled 99.8 14 Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like 57 c3rh7A_ not modelled 99.8 19 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution 58 c2yvoA_ not modelled 99.8 20 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 59 c3id9B_ not modelled 99.8 23 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis 60 c2i6kA_ not modelled 99.8 16 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 61 c2w4eA_ not modelled 99.7 18 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans 62 c3fjyB_ not modelled 99.7 15 PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis 63 d1v8ya_ not modelled 99.7 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 64 c2pnyA_ not modelled 99.7 15 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 65 d1vhza_ not modelled 99.7 10 Fold:Nudix Superfamily:Nudix Family:MutT-like 66 d1q33a_ not modelled 99.7 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 67 d1x51a1 not modelled 99.7 17 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 68 d1g0sa_ not modelled 99.7 14 Fold:Nudix Superfamily:Nudix Family:MutT-like 69 d1mqea_ not modelled 99.7 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 70 c3bm4B_ not modelled 99.7 19 PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr 71 c3f13A_ not modelled 99.7 18 PDB header:hydrolase Chain: A: PDB Molecule:putative nudix hydrolase family member; PDBTitle: crystal structure of putative nudix hydrolase family member2 from chromobacterium violaceum 72 c1rrqA_ not modelled 99.6 16 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 73 c3e57A_ not modelled 99.6 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein tm1382; PDBTitle: crystal structure of tm1382, a putative nudix hydrolase 74 c3q91D_ not modelled 99.6 21 PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) 75 d1rrqa2 not modelled 99.6 15 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 76 d1viua_ not modelled 99.5 12 Fold:Nudix Superfamily:Nudix Family:MutT-like 77 c2j8qB_ not modelled 99.5 14 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 78 c3dupB_ not modelled 99.5 12 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 79 d1u20a1 not modelled 99.4 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 80 c3qsjA_ not modelled 99.2 25 PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius 81 c3couA_ not modelled 98.4 23 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16; PDBTitle: crystal structure of human nudix motif 16 (nudt16) 82 c3kvhA_ not modelled 97.7 25 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 83 c3p5tE_ not modelled 97.3 17 PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex 84 c3brcA_ not modelled 18.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein of unknown function; PDBTitle: crystal structure of a conserved protein of unknown function from2 methanobacterium thermoautotrophicum 85 c3flcX_ not modelled 13.0 18 PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol 86 c1glbG_ not modelled 11.2 11 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 87 d1qpma_ not modelled 10.6 13 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Excisionase-like 88 c1lrzA_ not modelled 10.3 14 PDB header:antibiotic inhibitor Chain: A: PDB Molecule:factor essential for expression of methicillin PDBTitle: x-ray crystal structure of staphylococcus aureus fema 89 d2dexx3 not modelled 9.4 19 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Peptidylarginine deiminase Pad4, catalytic C-terminal domain 90 d1pn0a3 not modelled 9.0 13 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:PHBH-like 91 c3c4nB_ not modelled 8.2 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein dr_0571; PDBTitle: crystal structure of dr_0571 protein from deinococcus2 radiodurans in complex with adp. northeast structural3 genomics consortium target drr125 92 d1tnsa_ not modelled 7.9 17 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Excisionase-like 93 d1aopa2 not modelled 7.9 10 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 94 c3ifrB_ not modelled 7.8 11 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum 95 d1nc7a_ not modelled 7.6 22 Fold:Hypothetical protein TM1070 Superfamily:Hypothetical protein TM1070 Family:Hypothetical protein TM1070 96 c3enoB_ not modelled 7.3 3 PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 97 c3g25B_ not modelled 7.2 24 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 98 c3hz6A_ not modelled 6.4 8 PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum 99 c2ii8F_ not modelled 6.2 17 PDB header:signaling protein Chain: F: PDB Molecule:anabaena sensory rhodopsin transducer protein; PDBTitle: anabaena sensory rhodopsin transducer

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0