Email l.a.kelley@imperial.ac.uk Description Q47154 Date Thu Jan 5 12:36:29 GMT 2012 Unique Job ID bcc8d0cdc63e438e

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2zvyB_ 100.0 35 PDB header:membrane protein Chain: B: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form ii) 2 c3khnB_ 100.0 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:motb protein, putative; PDBTitle: crystal structure of putative motb like protein dvu_22282 from desulfovibrio vulgaris. 3 c2l26A_ 100.0 23 PDB header:membrane protein Chain: A: PDB Molecule:uncharacterized protein rv0899/mt0922; PDBTitle: rv0899 from mycobacterium tuberculosis contains two separated domains 4 c2k1sA_ 100.0 21 PDB header:lipoprotein Chain: A: PDB Molecule:inner membrane lipoprotein yiad; PDBTitle: solution nmr structure of the folded c-terminal fragment of yiad from2 escherichia coli. northeast structural genomics consortium target3 er553. 5 c3cyqM_ 100.0 20 PDB header:membrane protein Chain: M: PDB Molecule:chemotaxis protein motb; PDBTitle: the crystal structure of the complex of the c-terminal domain of2 helicobacter pylori motb (residues 125-256) with n-acetylmuramic acid 6 c2zovA_ 99.9 34 PDB header:membrane protein Chain: A: PDB Molecule:chemotaxis protein motb; PDBTitle: structure of the periplasmic domain of motb from salmonella2 (crystal form i) 7 c2kgwA_ 99.9 24 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: solution structure of the carboxy-terminal domain of ompatb, a pore2 forming protein from mycobacterium tuberculosis 8 d2aizp1 99.9 19 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 9 c3td4D_ 99.9 21 PDB header:membrane protein,peptide binding protein Chain: D: PDB Molecule:outer membrane protein omp38; PDBTitle: crystal structure of ompa-like domain from acinetobacter baumannii in2 complex with diaminopimelate 10 d2hqsc1 99.9 22 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 11 d1r1ma_ 99.9 20 Fold:Bacillus chorismate mutase-like Superfamily:OmpA-like Family:OmpA-like 12 c1r1mA_ 99.9 20 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein class 4; PDBTitle: structure of the ompa-like domain of rmpm from neisseria2 meningitidis 13 c3ldtA_ 99.9 16 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein, ompa family protein; PDBTitle: crystal structure of an outer membrane protein(ompa)from2 legionella pneumophila 14 c3oonA_ 99.9 23 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein (tpn50); PDBTitle: the structure of an outer membrance protein from borrelia burgdorferi2 b31 15 c2zf8A_ 99.6 27 PDB header:structural protein Chain: A: PDB Molecule:component of sodium-driven polar flagellar motor; PDBTitle: crystal structure of moty 16 d2cz4a1 39.0 12 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 17 d2axla1 31.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RecQ helicase DNA-binding domain-like 18 c3l7pA_ 30.8 13 PDB header:transcription Chain: A: PDB Molecule:putative nitrogen regulatory protein pii; PDBTitle: crystal structure of smu.1657c, putative nitrogen regulatory protein2 pii from streptococcus mutans 19 c3latB_ 29.9 11 PDB header:hydrolase Chain: B: PDB Molecule:bifunctional autolysin; PDBTitle: crystal structure of staphylococcus peptidoglycan hydrolase2 amie 20 c3o8wA_ 29.0 16 PDB header:signaling protein Chain: A: PDB Molecule:nitrogen regulatory protein p-ii (glnb-1); PDBTitle: archaeoglobus fulgidus glnk1 21 d1qy7a_ not modelled 28.7 14 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 22 c2rd5D_ not modelled 27.9 16 PDB header:protein binding Chain: D: PDB Molecule:pii protein; PDBTitle: structural basis for the regulation of n-acetylglutamate kinase by pii2 in arabidopsis thaliana 23 c3mhyC_ not modelled 26.5 11 PDB header:signaling protein Chain: C: PDB Molecule:pii-like protein pz; PDBTitle: a new pii protein structure 24 c3bzqA_ not modelled 23.5 19 PDB header:signaling protein/transcription Chain: A: PDB Molecule:nitrogen regulatory protein p-ii; PDBTitle: high resolution crystal structure of nitrogen regulatory protein2 (rv2919c) of mycobacterium tuberculosis 25 d2piia_ not modelled 21.7 18 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 26 c2j9dG_ not modelled 21.5 17 PDB header:membrane transport Chain: G: PDB Molecule:hypothetical nitrogen regulatory pii-like PDBTitle: structure of glnk1 with bound effectors indicates2 regulatory mechanism for ammonia uptake 27 d1hwua_ not modelled 21.5 21 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 28 d1ul3a_ not modelled 20.7 19 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 29 c3ncpD_ not modelled 20.4 21 PDB header:signaling protein Chain: D: PDB Molecule:nitrogen regulatory protein p-ii (glnb-2); PDBTitle: glnk2 from archaeoglobus fulgidus 30 d2ns1b1 not modelled 20.0 14 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 31 d1z2la1 not modelled 18.7 19 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 32 d1e32a3 not modelled 18.2 16 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 33 d1rbli_ not modelled 16.4 16 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 34 d1h4pa_ not modelled 16.1 9 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 35 d1svdm1 not modelled 14.9 8 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 36 d1uzhc1 not modelled 14.8 8 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 37 d1e5ma2 not modelled 13.8 9 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 38 d1ir1s_ not modelled 13.4 28 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 39 d1xhja_ not modelled 13.2 8 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 40 c2oghA_ not modelled 13.2 4 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor eif-1; PDBTitle: solution structure of yeast eif1 41 d1vfja_ not modelled 13.1 5 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Prokaryotic signal transducing protein 42 d1jx4a1 not modelled 13.0 16 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 43 d1k1sa1 not modelled 13.0 16 Fold:Lesion bypass DNA polymerase (Y-family), little finger domain Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain Family:Lesion bypass DNA polymerase (Y-family), little finger domain 44 d1bxni_ not modelled 12.3 20 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 45 d2if1a_ not modelled 12.0 22 Fold:eIF1-like Superfamily:eIF1-like Family:eIF1-like 46 c2qw5B_ not modelled 11.7 8 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase-like tim barrel; PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution 47 c3icgD_ not modelled 11.5 12 PDB header:hydrolase Chain: D: PDB Molecule:endoglucanase d; PDBTitle: crystal structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 48 d2gfva2 not modelled 11.4 17 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 49 d1bwvs_ not modelled 11.4 20 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 50 c3o0dF_ not modelled 11.3 25 PDB header:hydrolase Chain: F: PDB Molecule:triacylglycerol lipase; PDBTitle: crystal structure of lip2 lipase from yarrowia lipolytica at 1.7 a2 resolution 51 d1u5ta2 not modelled 11.3 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 52 c3r8kB_ not modelled 10.7 22 PDB header:apoptosis Chain: B: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul protein (hexagonal form) 53 d2gova1 not modelled 10.2 21 Fold:Probable bacterial effector-binding domain Superfamily:Probable bacterial effector-binding domain Family:SOUL heme-binding protein 54 d1tqya2 not modelled 10.1 12 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 55 c2q3vB_ not modelled 9.9 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein at2g34160; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at2g34160 56 d1d4oa_ not modelled 9.8 12 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Transhydrogenase domain III (dIII) 57 d1qnaa1 not modelled 9.8 14 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 58 d1saza1 not modelled 9.8 23 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 59 c1ir6A_ not modelled 9.8 15 PDB header:hydrolase Chain: A: PDB Molecule:exonuclease recj; PDBTitle: crystal structure of exonuclease recj bound to manganese 60 d1ir6a_ not modelled 9.8 15 Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Exonuclease RecJ 61 c2cfuA_ not modelled 9.7 10 PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid. 62 d2ix4a2 not modelled 9.5 18 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 63 c1pt9B_ not modelled 9.4 12 PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial; PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue 64 c3g7nA_ not modelled 9.1 17 PDB header:hydrolase Chain: A: PDB Molecule:lipase; PDBTitle: crystal structure of a triacylglycerol lipase from2 penicillium expansum at 1.3 65 d1jqna_ not modelled 9.0 15 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 66 d1xdpa4 not modelled 8.5 17 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 67 c3ds8A_ not modelled 8.5 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua 68 c1amuB_ not modelled 7.8 18 PDB header:peptide synthetase Chain: B: PDB Molecule:gramicidin synthetase 1; PDBTitle: phenylalanine activating domain of gramicidin synthetase 12 in a complex with amp and phenylalanine 69 c1nauA_ not modelled 7.6 18 PDB header:hormone/growth factor Chain: A: PDB Molecule:glucagon; PDBTitle: nmr solution structure of the glucagon antagonist [deshis1,2 desphe6, glu9]glucagon amide in the presence of3 perdeuterated dodecylphosphocholine micelles 70 c1jqoA_ not modelled 7.4 13 PDB header:lyase Chain: A: PDB Molecule:phosphoenolpyruvate carboxylase; PDBTitle: crystal structure of c4-form phosphoenolpyruvate carboxylase from2 maize 71 d1jqoa_ not modelled 7.4 13 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 72 d2o8ra4 not modelled 7.4 27 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 73 c2rodB_ not modelled 7.2 22 PDB header:apoptosis Chain: B: PDB Molecule:noxa; PDBTitle: solution structure of mcl-1 complexed with noxaa 74 c3hluA_ not modelled 7.2 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein duf2179; PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 duf2179 from eubacterium ventriosum 75 d3tgla_ not modelled 7.2 26 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases 76 d2j5pa1 not modelled 7.2 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FtsK C-terminal domain-like 77 d1ox0a2 not modelled 7.0 20 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 78 c3mmpC_ not modelled 7.0 21 PDB header:transferase Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts; PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins 79 d1r3na1 not modelled 7.0 11 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 80 d1tkja1 not modelled 6.9 18 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:Bacterial dinuclear zinc exopeptidases 81 c1ydoC_ not modelled 6.8 8 PDB header:lyase Chain: C: PDB Molecule:hmg-coa lyase; PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181. 82 d2v7fa1 not modelled 6.5 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Rps19E-like 83 c3aysA_ not modelled 6.5 10 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: gh5 endoglucanase from a ruminal fungus in complex with cellotriose 84 d1ybha1 not modelled 6.4 9 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 85 c2cw6B_ not modelled 6.1 17 PDB header:lyase Chain: B: PDB Molecule:hydroxymethylglutaryl-coa lyase, mitochondrial; PDBTitle: crystal structure of human hmg-coa lyase: insights into2 catalysis and the molecular basis for3 hydroxymethylglutaric aciduria 86 d2ve8a1 not modelled 6.1 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FtsK C-terminal domain-like 87 c4a1dH_ not modelled 6.0 22 PDB header:ribosome Chain: H: PDB Molecule:rpl35a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4. 88 d1j3na2 not modelled 5.8 22 Fold:Thiolase-like Superfamily:Thiolase-like Family:Thiolase-related 89 d1e5da2 not modelled 5.8 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 90 d1nh2a1 not modelled 5.8 12 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 91 d1amua_ not modelled 5.8 18 Fold:Acetyl-CoA synthetase-like Superfamily:Acetyl-CoA synthetase-like Family:Acetyl-CoA synthetase-like 92 d1uc8a1 not modelled 5.7 42 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Lysine biosynthesis enzyme LysX, N-terminal domain 93 c3lubE_ not modelled 5.6 13 PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution 94 d1fyba1 not modelled 5.5 18 Fold:Plant proteinase inhibitors Superfamily:Plant proteinase inhibitors Family:Plant proteinase inhibitors 95 c3bzjA_ not modelled 5.3 11 PDB header:hydrolase Chain: A: PDB Molecule:uv endonuclease; PDBTitle: uvde k229l 96 d1nh2a2 not modelled 5.2 15 Fold:TBP-like Superfamily:TATA-box binding protein-like Family:TATA-box binding protein (TBP), C-terminal domain 97 c3eyiB_ not modelled 5.2 29 PDB header:dna binding protein/dna Chain: B: PDB Molecule:z-dna-binding protein 1; PDBTitle: the crystal structure of the second z-dna binding domain of2 human dai (zbp1) in complex with z-dna 98 d1v8da_ not modelled 5.1 12 Fold:TTHA0583/YokD-like Superfamily:TTHA0583/YokD-like Family:Hypothetical protein TT1679