Email l.a.kelley@imperial.ac.uk Description P77522 Date Thu Jan 5 12:30:15 GMT 2012 Unique Job ID bbefcf8d874204b8

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1vh4a_ 100.0 20 Fold:Single-stranded right-handed beta-helix Superfamily:Stabilizer of iron transporter SufD Family:Stabilizer of iron transporter SufD 2 c2dagA_ 73.2 10 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 3 d1whca_ 64.7 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 4 c2daiA_ 63.0 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ubiquitin associated domain containing 1; PDBTitle: solution structure of the first uba domain in the human2 ubiquitin associated domain containing 1 (ubadc1) 5 d1dd9a_ 57.1 22 Fold:DNA primase core Superfamily:DNA primase core Family:DNA primase DnaG catalytic core 6 c1dd9A_ 57.1 22 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: structure of the dnag catalytic core 7 c2crnA_ 54.3 17 PDB header:immune system Chain: A: PDB Molecule:ubash3a protein; PDBTitle: solution structure of the uba domain of human ubash3a2 protein 8 d1veka_ 50.0 15 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 9 c2o2kA_ 45.8 26 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: crystal structure of the activation domain of human2 methionine synthase isoform/mutant d963e/k1071n 10 d1p32a_ 45.2 18 Fold:Mitochondrial glycoprotein MAM33-like Superfamily:Mitochondrial glycoprotein MAM33-like Family:Mitochondrial glycoprotein MAM33-like 11 d1nuia1 45.1 33 Fold:DNA primase core Superfamily:DNA primase core Family:Primase fragment of primase-helicase protein 12 d1wiva_ 43.2 22 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 13 d1mska_ 43.1 22 Fold:Methionine synthase activation domain-like Superfamily:Methionine synthase activation domain-like Family:Methionine synthase SAM-binding domain 14 c3ic3C_ 40.4 25 PDB header:oxidoreductase Chain: C: PDB Molecule:putative pyruvate dehydrogenase; PDBTitle: structure of a putative pyruvate dehydrogenase from the photosynthetic2 bacterium rhodopseudomonas palustrus cga009 15 d1yqfa1 39.3 18 Fold:Mitochondrial glycoprotein MAM33-like Superfamily:Mitochondrial glycoprotein MAM33-like Family:Mitochondrial glycoprotein MAM33-like 16 d1kx5d_ 36.9 29 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 17 c3qv0A_ 35.8 29 PDB header:protein binding Chain: A: PDB Molecule:mitochondrial acidic protein mam33; PDBTitle: crystal structure of saccharomyces cerevisiae mam33 18 d1eqzb_ 35.5 26 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 19 d2cpwa1 34.4 15 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 20 d2crna1 34.3 17 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 21 c1q57G_ not modelled 32.8 33 PDB header:transferase Chain: G: PDB Molecule:dna primase/helicase; PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7 22 c3jv1A_ not modelled 32.8 15 PDB header:hydrolase Chain: A: PDB Molecule:p22 protein; PDBTitle: crystal structure of the trypanosoma brucei p22 protein 23 d1s32d_ not modelled 31.5 29 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 24 d1n9pa_ not modelled 31.0 5 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytoplasmic domain of inward rectifier potassium channel 25 c2cpwA_ not modelled 30.4 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant; PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna 26 d1tzyb_ not modelled 29.9 26 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 27 c2dakA_ not modelled 29.6 20 PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5; PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5) 28 c2e4fA_ not modelled 29.2 7 PDB header:transport protein Chain: A: PDB Molecule:g protein-activated inward rectifier potassium channel 2; PDBTitle: crystal structure of the cytoplasmic domain of g-protein-gated inward2 rectifier potassium channel kir3.2 29 c3sf5D_ not modelled 24.8 5 PDB header:chaperone Chain: D: PDB Molecule:urease accessory protein ureh; PDBTitle: crystal structure of helicobacter pylori urease accessory protein2 uref/h complex 30 c2wknE_ not modelled 24.6 25 PDB header:hydrolase Chain: E: PDB Molecule:formamidase; PDBTitle: gamma lactamase from delftia acidovorans 31 d2csba4 not modelled 22.9 42 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 32 c1xdoB_ not modelled 22.7 10 PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase 33 d1vega_ not modelled 22.7 8 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 34 d1id3d_ not modelled 21.0 29 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 35 d2e1za2 not modelled 20.1 7 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 36 d1g99a2 not modelled 19.8 7 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 37 c2au3A_ not modelled 18.6 25 PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains) 38 c2o8rA_ not modelled 17.4 18 PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis 39 d1ifya_ not modelled 16.5 19 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 40 c2iw0A_ not modelled 16.5 29 PDB header:hydrolase Chain: A: PDB Molecule:chitin deacetylase; PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum 41 c3jurA_ not modelled 14.3 21 PDB header:hydrolase Chain: A: PDB Molecule:exo-poly-alpha-d-galacturonosidase; PDBTitle: the crystal structure of a hyperthermoactive exopolygalacturonase from2 thermotoga maritima 42 c1nuiA_ not modelled 13.5 33 PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein 43 c1tuuA_ not modelled 13.5 7 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: acetate kinase crystallized with atpgs 44 c2vyoA_ not modelled 13.5 14 PDB header:hydrolase Chain: A: PDB Molecule:chitooligosaccharide deacetylase; PDBTitle: chitin deacetylase family member from encephalitozoon2 cuniculi 45 d2g3qa1 not modelled 13.0 17 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 46 c1x3nA_ not modelled 13.0 12 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium 47 c3khyA_ not modelled 13.0 14 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4 48 c1sazA_ not modelled 12.8 19 PDB header:transferase Chain: A: PDB Molecule:probable butyrate kinase 2; PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima 49 c2zc1A_ not modelled 12.7 39 PDB header:hydrolase Chain: A: PDB Molecule:phosphotriesterase; PDBTitle: organophosphorus hydrolase from deinococcus radiodurans 50 d1rfza_ not modelled 12.4 10 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 51 d1oqya1 not modelled 12.1 15 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 52 c3iz6M_ not modelled 11.9 21 PDB header:ribosome Chain: M: PDB Molecule:40s ribosomal protein s18 (s13p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 53 d1pgya_ not modelled 11.9 19 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 54 d1v3aa_ not modelled 11.6 22 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 55 c2gm2A_ not modelled 11.4 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35 56 d1hiob_ not modelled 11.3 21 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 57 c2uveA_ not modelled 11.1 17 PDB header:hydrolase Chain: A: PDB Molecule:exopolygalacturonase; PDBTitle: structure of yersinia enterocolitica family 282 exopolygalacturonase 58 c2gu3A_ not modelled 11.1 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ypmb protein; PDBTitle: ypmb protein from bacillus subtilis 59 d1saza2 not modelled 11.1 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 60 d1ivza_ not modelled 11.1 8 Fold:Ferredoxin-like Superfamily:SEA domain Family:SEA domain 61 c2xu6B_ not modelled 11.0 12 PDB header:protein binding Chain: B: PDB Molecule:mdv1 coiled coil; PDBTitle: mdv1 coiled coil domain 62 c2k2eA_ not modelled 10.9 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bp2786; PDBTitle: solution nmr structure of bordetella pertussis protein2 bp2786, a mth938-like domain. northeast structural3 genomics consortium target ber31 63 d1p3mh_ not modelled 10.4 29 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 64 c3e3vA_ not modelled 10.3 9 PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx from lactobacillus salivarius 65 d2iw0a1 not modelled 10.3 29 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase 66 c2d9sA_ not modelled 10.2 13 PDB header:ligase Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase; PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna 67 c3ff5B_ not modelled 10.1 10 PDB header:protein transport Chain: B: PDB Molecule:peroxisomal biogenesis factor 14; PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p 68 d1yqga1 not modelled 9.9 11 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:ProC C-terminal domain-like 69 d1k8ba_ not modelled 9.3 29 Fold:Ribosome binding domain-like Superfamily:Translation initiation factor 2 beta, aIF2beta, N-terminal domain Family:Translation initiation factor 2 beta, aIF2beta, N-terminal domain 70 c1k98A_ not modelled 9.1 22 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: adomet complex of meth c-terminal fragment 71 c2iirJ_ not modelled 9.0 14 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 72 c2xznM_ not modelled 9.0 18 PDB header:ribosome Chain: M: PDB Molecule:rps18e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 73 c3flvA_ not modelled 8.7 20 PDB header:lipid binding protein Chain: A: PDB Molecule:acyl-coa-binding domain-containing protein 5; PDBTitle: the crystal structure of human acyl-coenzymea binding domain2 containing 5 74 c2zkqm_ not modelled 8.5 18 PDB header:ribosomal protein/rna Chain: M: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 75 c2qh9B_ not modelled 8.5 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0215 protein af_1433; PDBTitle: the crystal structure of a protein of unknown function from2 archaeoglobus fulgidus dsm 4304 76 c3rhgA_ not modelled 8.4 25 PDB header:hydrolase Chain: A: PDB Molecule:putative phophotriesterase; PDBTitle: crystal structure of amidohydrolase pmi1525 (target efi-500319) from2 proteus mirabilis hi4320 77 c2e0tA_ not modelled 8.2 28 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase 26; PDBTitle: crystal structure of catalytic domain of dual specificity phosphatase2 26, ms0830 from homo sapiens 78 c3d5lA_ not modelled 8.2 12 PDB header:signaling protein Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of regulatory protein recx 79 c2lm4A_ not modelled 8.0 28 PDB header:protein binding Chain: A: PDB Molecule:succinate dehydrogenase assembly factor 2, mitochondrial; PDBTitle: solution nmr structure of mitochondrial succinate dehydrogenase2 assembly factor 2 from saccharomyces cerevisiae, northeast structural3 genomics consortium target yt682a 80 c2w85A_ not modelled 7.9 8 PDB header:protein transport Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14; PDBTitle: structure of pex14 in compex with pex19 81 c3my3A_ not modelled 7.9 21 PDB header:transcription Chain: A: PDB Molecule:mterf domain-containing protein 1, mitochondrial; PDBTitle: crystal structure of human mitochondrial transcription termination2 factor 3 82 c3m66A_ not modelled 7.8 21 PDB header:transcription Chain: A: PDB Molecule:mterf domain-containing protein 1, mitochondrial; PDBTitle: crystal structure of human mitochondrial transcription termination2 factor 3 83 c2y96A_ not modelled 7.5 36 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase dupd1; PDBTitle: structure of human dual-specificity phosphatase 27 84 c3fp5A_ not modelled 7.5 16 PDB header:lipid binding protein Chain: A: PDB Molecule:acyl-coa binding protein; PDBTitle: crystal structure of acbp from moniliophthora perniciosa 85 c3dntB_ not modelled 7.5 12 PDB header:transferase Chain: B: PDB Molecule:protein hipa; PDBTitle: structures of mdt proteins 86 d2gcla1 not modelled 7.4 8 Fold:PH domain-like barrel Superfamily:PH domain-like Family:SSRP1-like 87 d1oqya2 not modelled 7.2 13 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 88 c3p04B_ not modelled 7.2 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 89 c2h9aB_ not modelled 7.2 22 PDB header:oxidoreductase Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase, iron- PDBTitle: corrinoid iron-sulfur protein 90 d1bhea_ not modelled 7.0 31 Fold:Single-stranded right-handed beta-helix Superfamily:Pectin lyase-like Family:Galacturonase 91 d1y02a1 not modelled 7.0 31 Fold:LEM/SAP HeH motif Superfamily:SAP domain Family:SAP domain 92 d2ahra1 not modelled 7.0 15 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:ProC C-terminal domain-like 93 c2do6A_ not modelled 6.9 6 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna 94 d1kv5a_ not modelled 6.9 19 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 95 d1oiza1 not modelled 6.9 15 Fold:RuvA C-terminal domain-like Superfamily:CRAL/TRIO N-terminal domain Family:CRAL/TRIO N-terminal domain 96 c3p04A_ not modelled 6.9 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 97 d1uw4a_ not modelled 6.9 13 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Smg-4/UPF3 98 c2pyhB_ not modelled 6.8 45 PDB header:isomerase Chain: B: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4; PDBTitle: azotobacter vinelandii mannuronan c-5 epimerase alge4 a-module2 complexed with mannuronan trisaccharide 99 c3p4iA_ not modelled 6.6 19 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: crystal structure of acetate kinase from mycobacterium avium