Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	P	S	I	R	L	A	D	L	A	Q	Q	L	D	A	E	L	H	G	D	G	D	I	V	I	T	G	V	A	S	M	Q	S	A	Q	T	G	H	I	T	F	M	V	N	P	K	Y	R	E	H	L	G	L	C	Q	A	S	A	V	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	T	Q	D	D	L	P	F	A	K	S	A	A	L	V	V	K	N	P	Y	L	T	Y	A	R	M	A	Q	I	L	D	T	T	P	Q	P	A	Q	N	I	A	P	S	A	V	I	D	A	T	A	K	L	G	N	N	V	S	I	G	A
Secondary structure
SS confidence
Disorder																																				?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	A	V	I	E	S	G	V	E	L	G	D	N	V	I	I	G	A	G	C	F	V	G	K	N	S	K	I	G	A	G	S	R	L	W	A	N	V	T	I	Y	H	E	I	Q	I	G	Q	N	C	L	I	Q	S	G	T	V	V	G	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		D	G	F	G	Y	A	N	D	R	G	N	W	V	K	I	P	Q	I	G	R	V	I	I	G	D	R	V	E	I	G	A	C	T	T	I	D	R	G	A	L	D	D	T	I	I	G	N	G	V	I	I	D	N	Q	C	Q	I	A	H	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	V	I	G	D	N	T	A	V	A	G	G	V	I	M	A	G	S	L	K	I	G	R	Y	C	M	I	G	G	A	S	V	I	N	G	H	M	E	I	C	D	K	V	T	V	T	G	M	G	M	V	M	R	P	I	T	E	P	G	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Sequence		Y	S	S	G	I	P	L	Q	P	N	K	V	W	R	K	T	A	A	L	V	M	N	I	D	D	M	S	K	R	L	K	S	L	E	R	K	V	N	Q	Q	D
Secondary structure
SS confidence
Disorder																																								?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3eh0 chain C Region: 1 - 341 Aligned: 341 Modelled: 341 Confidence: 100.0% Identity: 100% PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli Phyre2 PDB 3pmo chain A Region: 3 - 337 Aligned: 335 Modelled: 335 Confidence: 100.0% Identity: 51% PDB header:transferase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase; PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution Phyre2 PDB 2iu9 chain C Region: 2 - 341 Aligned: 339 Modelled: 340 Confidence: 100.0% Identity: 33% PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii) Phyre2 PDB 1j2z chain A Region: 98 - 341 Aligned: 218 Modelled: 219 Confidence: 100.0% Identity: 24% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: UDP N-acetylglucosamine acyltransferase Phyre2 PDB 3i3a chain C Region: 98 - 341 Aligned: 219 Modelled: 220 Confidence: 100.0% Identity: 22% PDB header:transferase Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n- PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa Phyre2 PDB 2jf2 chain A domain 1 Region: 94 - 341 Aligned: 222 Modelled: 223 Confidence: 100.0% Identity: 25% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: UDP N-acetylglucosamine acyltransferase Phyre2 PDB 3r0s chain A Region: 100 - 341 Aligned: 213 Modelled: 214 Confidence: 100.0% Identity: 28% PDB header:transferase Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o- PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni Phyre2 PDB 3fsb chain B Region: 98 - 315 Aligned: 204 Modelled: 205 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: B: PDB Molecule:qdtc; PDBTitle: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-2 glucose n-acetyl transferase from thermoanaerobacterium3 thermosaccharolyticum in complex with coa and dtdp-3-amino-4 quinovose Phyre2 PDB 2f9c chain A domain 1 Region: 98 - 311 Aligned: 212 Modelled: 214 Confidence: 100.0% Identity: 13% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: YdcK-like Phyre2 PDB 3c8v chain A Region: 85 - 310 Aligned: 204 Modelled: 211 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure of putative acetyltransferase (yp_390128.1) from2 desulfovibrio desulfuricans g20 at 2.28 a resolution Phyre2 PDB 2oi6 chain A domain 1 Region: 98 - 315 Aligned: 197 Modelled: 198 Confidence: 100.0% Identity: 21% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: GlmU C-terminal domain-like Phyre2 PDB 1g97 chain A domain 1 Region: 98 - 312 Aligned: 192 Modelled: 194 Confidence: 100.0% Identity: 20% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: GlmU C-terminal domain-like Phyre2 PDB 3eg4 chain A Region: 6 - 328 Aligned: 277 Modelled: 301 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase from brucella melitensis3 biovar abortus 2308 Phyre2 PDB 3bsw chain A domain 1 Region: 31 - 310 Aligned: 171 Modelled: 185 Confidence: 100.0% Identity: 22% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: PglD-like Phyre2 PDB 1mr7 chain A Region: 106 - 341 Aligned: 187 Modelled: 194 Confidence: 100.0% Identity: 20% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: Galactoside acetyltransferase-like Phyre2 PDB 1hm8 chain A Region: 79 - 329 Aligned: 222 Modelled: 230 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a Phyre2 PDB 3jqy chain B Region: 109 - 340 Aligned: 192 Modelled: 192 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystal strucutre of the polysia specific acetyltransferase neuo Phyre2 PDB 3mqh chain D Region: 113 - 311 Aligned: 154 Modelled: 155 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: D: PDB Molecule:lipopolysaccharides biosynthesis acetyltransferase; PDBTitle: crystal structure of the 3-n-acetyl transferase wlbb from bordetella2 petrii in complex with coa and udp-3-amino-2-acetamido-2,3-dideoxy3 glucuronic acid Phyre2 PDB 2wlg chain A Region: 103 - 316 Aligned: 175 Modelled: 177 Confidence: 99.9% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystallographic analysis of the polysialic acid o-2 acetyltransferase oatwy Phyre2 PDB 2v0h chain A Region: 79 - 316 Aligned: 215 Modelled: 217 Confidence: 99.9% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu) Phyre2 1 c3eh0C_ 2 c3pmoA_ 3 c2iu9C_ 4 d1j2za_ 5 c3i3aC_ 6 d2jf2a1 7 c3r0sA_ 8 c3fsbB_ 9 d2f9ca1 10 c3c8vA_ 11 d2oi6a1 12 d1g97a1 13 c3eg4A_ 14 d3bswa1 15 d1mr7a_ 16 c1hm8A_ 17 c3jqyB_ 18 c3mqhD_ 19 c2wlgA_ 20 c2v0hA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3eh0C_ 100.0 100 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli 2 c3pmoA_ 100.0 51 PDB header:transferase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase; PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution 3 c2iu9C_ 100.0 33 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii) 4 d1j2za_ 100.0 24 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 5 c3i3aC_ 100.0 22 PDB header:transferase Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n- PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa 6 d2jf2a1 100.0 25 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 7 c3r0sA_ 100.0 28 PDB header:transferase Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o- PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni 8 c3fsbB_ 100.0 25 PDB header:transferase Chain: B: PDB Molecule:qdtc; PDBTitle: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-2 glucose n-acetyl transferase from thermoanaerobacterium3 thermosaccharolyticum in complex with coa and dtdp-3-amino-4 quinovose 9 d2f9ca1 100.0 13 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:YdcK-like 10 c3c8vA_ 100.0 15 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure of putative acetyltransferase (yp_390128.1) from2 desulfovibrio desulfuricans g20 at 2.28 a resolution 11 d2oi6a1 100.0 21 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 12 d1g97a1 100.0 20 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 13 c3eg4A_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase from brucella melitensis3 biovar abortus 2308 14 d3bswa1 100.0 22 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:PglD-like 15 d1mr7a_ 100.0 20 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 16 c1hm8A_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a 17 c3jqyB_ 100.0 18 PDB header:transferase Chain: B: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystal strucutre of the polysia specific acetyltransferase neuo 18 c3mqhD_ 100.0 19 PDB header:transferase Chain: D: PDB Molecule:lipopolysaccharides biosynthesis acetyltransferase; PDBTitle: crystal structure of the 3-n-acetyl transferase wlbb from bordetella2 petrii in complex with coa and udp-3-amino-2-acetamido-2,3-dideoxy3 glucuronic acid 19 c2wlgA_ 99.9 21 PDB header:transferase Chain: A: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystallographic analysis of the polysialic acid o-2 acetyltransferase oatwy 20 c2v0hA_ 99.9 16 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu) 21 c3cj8B_ not modelled 99.9 22 PDB header:transferase Chain: B: PDB Molecule:2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate n-2 succinyltransferase from enterococcus faecalis v583 22 d1qrea_ not modelled 99.9 17 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like 23 c1qreA_ not modelled 99.9 17 PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: a closer look at the active site of gamma-carbonic anhydrases: high2 resolution crystallographic studies of the carbonic anhydrase from3 methanosarcina thermophila 24 c3r3rA_ not modelled 99.9 19 PDB header:transferase Chain: A: PDB Molecule:ferripyochelin binding protein; PDBTitle: structure of the yrda ferripyochelin binding protein from salmonella2 enterica 25 c2oi6A_ not modelled 99.9 20 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: e. coli glmu- complex with udp-glcnac, coa and glcn-1-po4 26 d1v3wa_ not modelled 99.9 20 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like 27 c3ectA_ not modelled 99.9 18 PDB header:transferase Chain: A: PDB Molecule:hexapeptide-repeat containing-acetyltransferase; PDBTitle: crystal structure of the hexapeptide-repeat containing-2 acetyltransferase vca0836 from vibrio cholerae 28 d1xata_ not modelled 99.9 13 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 29 c3srtB_ not modelled 99.9 26 PDB header:transferase Chain: B: PDB Molecule:maltose o-acetyltransferase; PDBTitle: the crystal structure of a maltose o-acetyltransferase from2 clostridium difficile 630 30 d1krra_ not modelled 99.9 24 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 31 c2ic7A_ not modelled 99.9 19 PDB header:transferase Chain: A: PDB Molecule:maltose transacetylase; PDBTitle: crystal structure of maltose transacetylase from2 geobacillus kaustophilus 32 c3fttA_ not modelled 99.9 32 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase sacol2570; PDBTitle: crystal structure of the galactoside o-acetyltransferase2 from staphylococcus aureus 33 c3eevC_ not modelled 99.9 16 PDB header:transferase Chain: C: PDB Molecule:chloramphenicol acetyltransferase; PDBTitle: crystal structure of chloramphenicol acetyltransferase vca0300 from2 vibrio cholerae o1 biovar eltor 34 d1xhda_ not modelled 99.9 25 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like 35 d3tdta_ not modelled 99.9 20 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD 36 d1ocxa_ not modelled 99.9 26 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 37 c3r1wA_ not modelled 99.9 25 PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: crystal structure of a carbonic anhydrase from a crude oil degrading2 psychrophilic library 38 c3ixcA_ not modelled 99.9 17 PDB header:transferase Chain: A: PDB Molecule:hexapeptide transferase family protein; PDBTitle: crystal structure of hexapeptide transferase family protein from2 anaplasma phagocytophilum 39 d1t3da_ not modelled 99.9 26 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 40 c1t3dB_ not modelled 99.9 28 PDB header:transferase Chain: B: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a 41 d1ssqa_ not modelled 99.8 24 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 42 c2ggqA_ not modelled 99.8 21 PDB header:transferase Chain: A: PDB Molecule:401aa long hypothetical glucose-1-phosphate PDBTitle: complex of hypothetical glucose-1-phosphate thymidylyltransferase from2 sulfolobus tokodaii 43 c3mc4A_ not modelled 99.8 20 PDB header:transferase Chain: A: PDB Molecule:ww/rsp5/wwp domain:bacterial transferase PDBTitle: crystal structure of ww/rsp5/wwp domain: bacterial2 transferase hexapeptide repeat: serine o-acetyltransferase3 from brucella melitensis 44 c3q1xA_ not modelled 99.8 19 PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of entamoeba histolytica serine acetyltransferase 12 in complex with l-serine 45 c3kwdA_ not modelled 99.8 22 PDB header:lyase, protein binding, photosynthesis Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein; PDBTitle: inactive truncation of the beta-carboxysomal gamma-carbonic anhydrase,2 ccmm, form 1 46 c3f1xA_ not modelled 99.7 20 PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: three dimensional structure of the serine acetyltransferase from2 bacteroides vulgatus, northeast structural genomics consortium target3 bvr62. 47 c3d98A_ not modelled 99.7 14 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form 48 c3fsyC_ not modelled 99.7 14 PDB header:transferase Chain: C: PDB Molecule:tetrahydrodipicolinate n-succinyltransferase; PDBTitle: structure of tetrahydrodipicolinate n-succinyltransferase2 (rv1201c;dapd) in complex with succinyl-coa from mycobacterium3 tuberculosis 49 c2qkxA_ not modelled 99.7 14 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate 50 d1yp2a1 not modelled 99.6 16 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 51 c1yp3C_ not modelled 99.4 16 PDB header:transferase Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp 52 d1fxja1 not modelled 99.3 31 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 53 c2rijA_ not modelled 99.3 16 PDB header:transferase Chain: A: PDB Molecule:putative 2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of a putative 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase (cj1605c, dapd) from campylobacter3 jejuni at 1.90 a resolution 54 c1fwyA_ not modelled 99.2 25 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of n-acetylglucosamine 1-phosphate2 uridyltransferase bound to udp-glcnac 55 c3brkX_ not modelled 99.0 14 PDB header:transferase Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase; PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens 56 d1gg4a3 not modelled 98.6 22 Fold:MurF and HprK N-domain-like Superfamily:MurE/MurF N-terminal domain Family:MurE/MurF N-terminal domain 57 c2wtzC_ not modelled 98.1 24 PDB header:ligase Chain: C: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate- PDBTitle: mure ligase of mycobacterium tuberculosis 58 c1gg4A_ not modelled 98.0 20 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamyl-2,6- PDBTitle: crystal structure of escherichia coli udpmurnac-tripeptide2 d-alanyl-d-alanine-adding enzyme (murf) at 2.3 angstrom3 resolution 59 c2am1A_ not modelled 97.7 11 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine-d-glutamyl-lysine-d-alanyl-d- PDBTitle: sp protein ligand 1 60 d1e8ca1 not modelled 96.4 9 Fold:MurF and HprK N-domain-like Superfamily:MurE/MurF N-terminal domain Family:MurE/MurF N-terminal domain 61 c1e8cB_ not modelled 95.1 10 PDB header:ligase Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6- PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide2 synthetase from e. coli 62 c1cosC_ not modelled 73.0 24 PDB header:alpha-helical bundle Chain: C: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 63 c1cosA_ not modelled 69.1 24 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 64 c1cosB_ not modelled 69.1 24 PDB header:alpha-helical bundle Chain: B: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle 65 c3ci9B_ not modelled 57.1 35 PDB header:transcription Chain: B: PDB Molecule:heat shock factor-binding protein 1; PDBTitle: crystal structure of the human hsbp1 66 c1by0A_ not modelled 53.4 14 PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen 67 c2jgoA_ not modelled 48.2 24 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 68 c2jgoC_ not modelled 48.2 24 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 69 c3ljmC_ not modelled 48.2 24 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 70 c2jgoB_ not modelled 48.2 24 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9c; PDBTitle: stucture of the arsenated de novo designed peptide coil ser2 l9c 71 c3ljmA_ not modelled 48.2 24 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 72 c3ljmB_ not modelled 48.2 24 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l9c; PDBTitle: structure of de novo designed apo peptide coil ser l9c 73 c1coiA_ not modelled 42.0 24 PDB header:alpha-helical bundle Chain: A: PDB Molecule:coil-vald; PDBTitle: designed trimeric coiled coil-vald 74 d1lcda_ not modelled 41.7 29 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 75 c3gw6F_ not modelled 41.4 17 PDB header:chaperone Chain: F: PDB Molecule:endo-n-acetylneuraminidase; PDBTitle: intramolecular chaperone 76 c2nydB_ not modelled 40.1 20 PDB header:unknown function Chain: B: PDB Molecule:upf0135 protein sa1388; PDBTitle: crystal structure of staphylococcus aureus hypothetical protein sa1388 77 c1a92B_ not modelled 33.3 14 PDB header:leucine zipper Chain: B: PDB Molecule:delta antigen; PDBTitle: oligomerization domain of hepatitis delta antigen 78 c2x6pA_ not modelled 29.0 20 PDB header:de novo protein Chain: A: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 79 c2x6pC_ not modelled 29.0 20 PDB header:de novo protein Chain: C: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 80 c2x6pB_ not modelled 29.0 20 PDB header:de novo protein Chain: B: PDB Molecule:coil ser l19c; PDBTitle: crystal structure of coil ser l19c 81 c1lq7A_ not modelled 28.9 21 PDB header:de novo protein Chain: A: PDB Molecule:alpha3w; PDBTitle: de novo designed protein model of radical enzymes 82 c1aq5C_ not modelled 28.6 29 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 83 d2bjca1 not modelled 27.5 29 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 84 d2ioja1 not modelled 27.2 8 Fold:MurF and HprK N-domain-like Superfamily:HprK N-terminal domain-like Family:DRTGG domain 85 c1zvvA_ not modelled 21.4 23 PDB header:transcription/dna Chain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex 86 c2wq1A_ not modelled 17.5 42 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with three ixxntxx motifs2 coordinating bromide 87 c2wq3A_ not modelled 17.5 42 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with three ixxntxx motifs2 coordinating chloride and nitrate 88 c2ergA_ not modelled 16.6 25 PDB header:transcription activator/dna Chain: A: PDB Molecule:regulatory protein leu3; PDBTitle: crystal structure of leu3 dna-binding domain with a single2 h50c mutation complexed with a 15mer dna duplex 89 d2hh6a1 not modelled 16.6 11 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 90 c2cwoD_ not modelled 15.5 18 PDB header:rna binding protein Chain: D: PDB Molecule:rna silencing suppressor; PDBTitle: crystal structure of rna silencing suppressor p21 from beet yellows2 virus 91 d2o3la1 not modelled 15.0 15 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 92 c1dipA_ not modelled 14.3 16 PDB header:acetylation Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures 93 c2xzrA_ not modelled 14.2 17 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 94 c1ry3A_ not modelled 14.1 15 PDB header:antibiotic Chain: A: PDB Molecule:bacteriocin carnobacteriocin b2; PDBTitle: nmr solution structure of the precursor for2 carnobacteriocin b2, an antimicrobial peptide from3 carnobacterium piscicola 95 c1ce0B_ not modelled 13.8 29 PDB header:hiv-1 envelope protein Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model 96 c2ccfA_ not modelled 12.2 33 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: antiparallel configuration of pli e20s 97 c1u9fA_ not modelled 12.2 33 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16) 98 c2wpzA_ not modelled 11.6 50 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: gcn4 leucine zipper mutant with two vxxnxxx motifs2 coordinating chloride 99 c1unwB_ not modelled 11.6 33 PDB header:four helix bundle Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0