Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	N	P	Q	F	A	G	H	P	F	G	T	T	V	T	A	E	T	L	R	N	T	F	A	P	L	T	Q	W	E	D	K	Y	R	Q	L	I	M	L	G	K	Q	L	P	A	L	P	D	E	L	K	A	Q	A	K	E	I	A	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?										?		?	?																		?	?					?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		C	E	N	R	V	W	L	G	Y	T	V	A	E	N	G	K	M	H	F	F	G	D	S	E	G	R	I	V	R	G	L	L	A	V	L	L	T	A	V	E	G	K	T	A	A	E	L	Q	A	Q	S	P	L	A	L	F	D	E	L	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Sequence		L	R	A	Q	L	S	A	S	R	S	Q	G	L	N	A	L	S	E	A	I	I	A	A	T	K	Q	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																				?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1ni7 chain A Region: 1 - 147 Aligned: 147 Modelled: 147 Confidence: 100.0% Identity: 100% Fold: SufE/NifU Superfamily: SufE/NifU Family: SufE-like Phyre2 PDB 1mzg chain A Region: 16 - 147 Aligned: 132 Modelled: 132 Confidence: 100.0% Identity: 33% Fold: SufE/NifU Superfamily: SufE/NifU Family: SufE-like Phyre2 PDB 1wlo chain A Region: 17 - 146 Aligned: 125 Modelled: 130 Confidence: 100.0% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sufe protein; PDBTitle: solution structure of the hypothetical protein from thermus2 thermophilus hb8 Phyre2 PDB 1r9p chain A Region: 59 - 146 Aligned: 83 Modelled: 88 Confidence: 95.8% Identity: 22% Fold: SufE/NifU Superfamily: SufE/NifU Family: NifU/IscU domain Phyre2 PDB 1wfz chain A Region: 59 - 146 Aligned: 83 Modelled: 88 Confidence: 91.7% Identity: 19% Fold: SufE/NifU Superfamily: SufE/NifU Family: NifU/IscU domain Phyre2 PDB 2z7e chain B Region: 59 - 146 Aligned: 84 Modelled: 88 Confidence: 83.7% Identity: 19% PDB header:biosynthetic protein Chain: B: PDB Molecule:nifu-like protein; PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster Phyre2 PDB 2iy9 chain A Region: 67 - 110 Aligned: 44 Modelled: 44 Confidence: 63.5% Identity: 25% PDB header:toxin Chain: A: PDB Molecule:suba; PDBTitle: crystal structure of the a-subunit of the ab5 toxin from e.2 coli Phyre2 PDB 1gci chain A Region: 65 - 110 Aligned: 46 Modelled: 0 Confidence: 62.8% Identity: 15% Fold: Subtilisin-like Superfamily: Subtilisin-like Family: Subtilases Phyre2 PDB 2b6n chain A Region: 72 - 110 Aligned: 39 Modelled: 39 Confidence: 62.0% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:proteinase k; PDBTitle: the 1.8 a crystal structure of a proteinase k like enzyme from a2 psychrotroph serratia species Phyre2 PDB 1r0r chain E Region: 66 - 110 Aligned: 45 Modelled: 45 Confidence: 59.4% Identity: 20% Fold: Subtilisin-like Superfamily: Subtilisin-like Family: Subtilases Phyre2 PDB 1s2n chain B Region: 85 - 110 Aligned: 26 Modelled: 26 Confidence: 58.8% Identity: 27% PDB header:hydrolase Chain: B: PDB Molecule:extracellular subtilisin-like serine proteinase; PDBTitle: crystal strucure of a cold adapted subtilisin-like serine proteinase Phyre2 PDB 2ixt chain A domain 1 Region: 67 - 110 Aligned: 44 Modelled: 44 Confidence: 55.3% Identity: 20% Fold: Subtilisin-like Superfamily: Subtilisin-like Family: Subtilases Phyre2 PDB 2w2q chain A Region: 85 - 110 Aligned: 26 Modelled: 26 Confidence: 54.4% Identity: 35% PDB header:hydrolase/receptor Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: pcsk9-deltac d374h mutant bound to wt egf-a of ldlr Phyre2 PDB 3f7o chain B Region: 67 - 110 Aligned: 44 Modelled: 44 Confidence: 53.4% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:serine protease; PDBTitle: crystal structure of cuticle-degrading protease from paecilomyces2 lilacinus (pl646) Phyre2 PDB 2oxa chain A Region: 85 - 110 Aligned: 26 Modelled: 26 Confidence: 52.0% Identity: 19% PDB header:hydrolase Chain: A: PDB Molecule:extracellular serine protease; PDBTitle: crystal structure of serine protease of aeromonas sobria Phyre2 PDB 1gns chain A Region: 83 - 110 Aligned: 28 Modelled: 28 Confidence: 51.3% Identity: 18% Fold: Subtilisin-like Superfamily: Subtilisin-like Family: Subtilases Phyre2 PDB 1p8j chain A domain 2 Region: 85 - 110 Aligned: 26 Modelled: 26 Confidence: 50.2% Identity: 23% Fold: Subtilisin-like Superfamily: Subtilisin-like Family: Subtilases Phyre2 PDB 1to2 chain E Region: 85 - 110 Aligned: 26 Modelled: 26 Confidence: 47.6% Identity: 19% Fold: Subtilisin-like Superfamily: Subtilisin-like Family: Subtilases Phyre2 PDB 2qq4 chain A Region: 31 - 145 Aligned: 113 Modelled: 115 Confidence: 47.4% Identity: 18% PDB header:metal binding protein Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu; PDBTitle: crystal structure of iron-sulfur cluster biosynthesis2 protein iscu (ttha1736) from thermus thermophilus hb8 Phyre2 PDB 1v6c chain A Region: 85 - 110 Aligned: 26 Modelled: 26 Confidence: 45.9% Identity: 15% Fold: Subtilisin-like Superfamily: Subtilisin-like Family: Subtilases Phyre2 1 d1ni7a_ 2 d1mzga_ 3 c1wloA_ 4 d1r9pa_ 5 d1wfza_ 6 c2z7eB_ 7 c2iy9A_ 8 d1gcia_ 9 c2b6nA_ 10 d1r0re_ 11 c1s2nB_ 12 d2ixta1 13 c2w2qA_ 14 c3f7oB_ 15 c2oxaA_ 16 d1gnsa_ 17 d1p8ja2 18 d1to2e_ 19 c2qq4A_ 20 d1v6ca_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1ni7a_ 100.0 100 Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like 2 d1mzga_ 100.0 33 Fold:SufE/NifU Superfamily:SufE/NifU Family:SufE-like 3 c1wloA_ 100.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sufe protein; PDBTitle: solution structure of the hypothetical protein from thermus2 thermophilus hb8 4 d1r9pa_ 95.8 22 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 5 d1wfza_ 91.7 19 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 6 c2z7eB_ 83.7 19 PDB header:biosynthetic protein Chain: B: PDB Molecule:nifu-like protein; PDBTitle: crystal structure of aquifex aeolicus iscu with bound [2fe-2 2s] cluster 7 c2iy9A_ 63.5 25 PDB header:toxin Chain: A: PDB Molecule:suba; PDBTitle: crystal structure of the a-subunit of the ab5 toxin from e.2 coli 8 d1gcia_ 62.8 15 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 9 c2b6nA_ 62.0 18 PDB header:hydrolase Chain: A: PDB Molecule:proteinase k; PDBTitle: the 1.8 a crystal structure of a proteinase k like enzyme from a2 psychrotroph serratia species 10 d1r0re_ 59.4 20 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 11 c1s2nB_ 58.8 27 PDB header:hydrolase Chain: B: PDB Molecule:extracellular subtilisin-like serine proteinase; PDBTitle: crystal strucure of a cold adapted subtilisin-like serine proteinase 12 d2ixta1 55.3 20 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 13 c2w2qA_ 54.4 35 PDB header:hydrolase/receptor Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: pcsk9-deltac d374h mutant bound to wt egf-a of ldlr 14 c3f7oB_ 53.4 20 PDB header:hydrolase Chain: B: PDB Molecule:serine protease; PDBTitle: crystal structure of cuticle-degrading protease from paecilomyces2 lilacinus (pl646) 15 c2oxaA_ 52.0 19 PDB header:hydrolase Chain: A: PDB Molecule:extracellular serine protease; PDBTitle: crystal structure of serine protease of aeromonas sobria 16 d1gnsa_ 51.3 18 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 17 d1p8ja2 50.2 23 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 18 d1to2e_ 47.6 19 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 19 c2qq4A_ 47.4 18 PDB header:metal binding protein Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu; PDBTitle: crystal structure of iron-sulfur cluster biosynthesis2 protein iscu (ttha1736) from thermus thermophilus hb8 20 d1v6ca_ 45.9 15 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 21 d2id4a2 not modelled 45.4 23 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 22 d1pdaa2 not modelled 43.9 14 Fold:dsRBD-like Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 23 c1r64A_ not modelled 43.1 23 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:kexin; PDBTitle: the 2.2 a crystal structure of kex2 protease in complex with ac-arg-2 glu-lys-boroarg peptidyl boronic acid inhibitor 24 c1p8jB_ not modelled 40.8 23 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:furin precursor; PDBTitle: crystal structure of the proprotein convertase furin 25 c3qfhE_ not modelled 40.4 18 PDB header:hydrolase Chain: E: PDB Molecule:epidermin leader peptide processing serine protease epip; PDBTitle: 2.05 angstrom resolution crystal structure of epidermin leader peptide2 processing serine protease (epip) from staphylococcus aureus. 26 d1gtka2 not modelled 39.1 14 Fold:dsRBD-like Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 27 d1bh6a_ not modelled 38.7 19 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 28 c3lpcA_ not modelled 33.3 35 PDB header:hydrolase Chain: A: PDB Molecule:aprb2; PDBTitle: crystal structure of a subtilisin-like protease 29 c3bpsA_ not modelled 32.4 35 PDB header:hydrolase/lipid transport Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: pcsk9:egf-a complex 30 d1nexa1 not modelled 31.1 26 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 31 d1xjsa_ not modelled 27.0 18 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 32 d1fs1b1 not modelled 26.9 39 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 33 c2yukA_ not modelled 25.6 14 PDB header:transferase Chain: A: PDB Molecule:myeloid/lymphoid or mixed-lineage leukemia PDBTitle: solution structure of the hmg box of human myeloid/lymphoid2 or mixed-lineage leukemia protein 3 homolog 34 d1fs2b1 not modelled 25.5 39 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 35 d1su0b_ not modelled 24.8 21 Fold:SufE/NifU Superfamily:SufE/NifU Family:NifU/IscU domain 36 d2pwaa1 not modelled 23.5 23 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 37 d1r6va_ not modelled 22.2 23 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 38 d1meea_ not modelled 22.0 23 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 39 d2olra2 not modelled 18.8 8 Fold:PEP carboxykinase N-terminal domain Superfamily:PEP carboxykinase N-terminal domain Family:PEP carboxykinase N-terminal domain 40 c2ypnA_ not modelled 18.1 14 PDB header:transferase Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase); PDBTitle: hydroxymethylbilane synthase 41 d2ovra1 not modelled 17.8 39 Fold:Skp1 dimerisation domain-like Superfamily:Skp1 dimerisation domain-like Family:Skp1 dimerisation domain-like 42 c3t41B_ not modelled 17.3 16 PDB header:hydrolase Chain: B: PDB Molecule:epidermin leader peptide processing serine protease epip; PDBTitle: 1.95 angstrom resolution crystal structure of epidermin leader peptide2 processing serine protease (epip) s393a mutant from staphylococcus3 aureus 43 d1go4a_ not modelled 17.3 12 Fold:The spindle assembly checkpoint protein mad2 Superfamily:The spindle assembly checkpoint protein mad2 Family:The spindle assembly checkpoint protein mad2 44 c3e21A_ not modelled 14.7 19 PDB header:apoptosis Chain: A: PDB Molecule:fas-associated factor 1; PDBTitle: crystal structure of faf-1 uba domain 45 d1luca_ not modelled 13.9 14 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Bacterial luciferase (alkanal monooxygenase) 46 d2hh6a1 not modelled 13.8 33 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 47 c3gq2B_ not modelled 13.7 20 PDB header:transport protein Chain: B: PDB Molecule:general vesicular transport factor p115; PDBTitle: crystal structure of the dimer of the p115 tether globular head domain 48 d1ii2a2 not modelled 12.4 20 Fold:PEP carboxykinase N-terminal domain Superfamily:PEP carboxykinase N-terminal domain Family:PEP carboxykinase N-terminal domain 49 c3lysC_ not modelled 12.1 17 PDB header:recombination Chain: C: PDB Molecule:prophage pi2 protein 01, integrase; PDBTitle: crystal structure of the n-terminal domain of the prophage2 pi2 protein 01 (integrase) from lactococcus lactis,3 northeast structural genomics consortium target kr124f 50 d1dbia_ not modelled 11.9 25 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 51 c3i74B_ not modelled 10.7 15 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:subtilisin-like protease; PDBTitle: crystal structure of the plant subtilisin-like protease sbt3 in2 complex with a chloromethylketone inhibitor 52 c2w0gA_ not modelled 10.6 27 PDB header:chaperone Chain: A: PDB Molecule:hsp90 co-chaperone cdc37; PDBTitle: hsp90 co-chaperone cdc37 53 c2gjvF_ not modelled 10.3 19 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:putative cytoplasmic protein; PDBTitle: crystal structure of a protein of unknown function from salmonella2 typhimurium 54 c2hl7A_ not modelled 10.1 23 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh; PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa 55 d2gjva1 not modelled 10.1 19 Fold:Phage tail protein-like Superfamily:Phage tail protein-like Family:STM4215-like 56 c2w3cA_ not modelled 10.1 20 PDB header:transport protein Chain: A: PDB Molecule:general vesicular transport factor p115; PDBTitle: globular head region of the human general vesicular2 transport factor p115 57 c2qk1A_ not modelled 10.0 7 PDB header:protein binding Chain: A: PDB Molecule:protein stu2; PDBTitle: structural basis of microtubule plus end tracking by2 xmap215, clip-170 and eb1 58 c2kkpA_ not modelled 9.8 15 PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171). 59 c1bq0A_ not modelled 9.8 8 PDB header:chaperone Chain: A: PDB Molecule:dnaj; PDBTitle: j-domain (residues 1-77) of the escherichia coli n-terminal2 fragment (residues 1-104) of the molecular chaperone dnaj,3 nmr, 20 structures 60 d1w6ka2 not modelled 8.9 17 Fold:alpha/alpha toroid Superfamily:Terpenoid cyclases/Protein prenyltransferases Family:Terpene synthases 61 d1gm5a1 not modelled 8.9 22 Fold:Four-helical up-and-down bundle Superfamily:RecG, N-terminal domain Family:RecG, N-terminal domain 62 d1n83a_ not modelled 8.6 6 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 63 d1us7b_ not modelled 8.5 27 Fold:Hsp90 co-chaperone CDC37 Superfamily:Hsp90 co-chaperone CDC37 Family:Hsp90 co-chaperone CDC37 64 c1us7B_ not modelled 8.5 27 PDB header:chaperone Chain: B: PDB Molecule:hsp90 co-chaperone cdc37; PDBTitle: complex of hsp90 and p50 65 c2kykA_ not modelled 8.5 29 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog; PDBTitle: the sandwich region between two lmp2a py motif regulates the2 interaction between aip4ww2domain and py motif 66 c3lbdA_ not modelled 7.9 7 PDB header:nuclear receptor Chain: A: PDB Molecule:retinoic acid receptor gamma; PDBTitle: ligand-binding domain of the human retinoic acid receptor2 gamma bound to 9-cis retinoic acid 67 c3bvoA_ not modelled 7.6 16 PDB header:chaperone Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor; PDBTitle: crystal structure of human co-chaperone protein hscb 68 c3dmbA_ not modelled 7.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:putative general stress protein 26 with a pnp-oxidase like PDBTitle: crystal structure of a putative general stress family protein2 (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a3 resolution 69 c2oaxC_ not modelled 7.4 29 PDB header:transcription Chain: C: PDB Molecule:mineralocorticoid receptor; PDBTitle: crystal structure of the s810l mutant mineralocorticoid2 receptor associated with sc9420 70 c2kvhA_ not modelled 7.2 24 PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein 71 c2dl0A_ not modelled 7.2 17 PDB header:signaling protein Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1; PDBTitle: solution structure of the sam-domain of the sam and sh32 domain containing protein 1 72 d1fpoa1 not modelled 7.1 17 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 73 d1x40a1 not modelled 7.1 13 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 74 d1xbla_ not modelled 6.9 8 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 75 c3eq1A_ not modelled 6.7 22 PDB header:transferase Chain: A: PDB Molecule:porphobilinogen deaminase; PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution 76 d1coka_ not modelled 6.7 27 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 77 c2kg5A_ not modelled 6.7 16 PDB header:signaling protein Chain: A: PDB Molecule:arf-gap, rho-gap domain, ank repeat and ph PDBTitle: nmr solution structure of arap3-sam 78 d1dd4c_ not modelled 6.6 21 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 79 d2fiqa1 not modelled 6.5 22 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:GatZ-like 80 d1dd3a1 not modelled 6.5 21 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 81 d1pq9a_ not modelled 6.4 12 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 82 d1dd4d_ not modelled 6.2 21 Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain 83 d1i36a1 not modelled 6.1 20 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Conserved hypothetical protein MTH1747 84 c2kd1A_ not modelled 6.1 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dna integration/recombination/invertion protein; PDBTitle: solution nmr structure of the integrase-like domain from2 bacillus cereus ordered locus bc_1272. northeast3 structural genomics consortium target bcr268f 85 c2kw0A_ not modelled 6.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:ccmh protein; PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli 86 d1hdja_ not modelled 5.9 9 Fold:Long alpha-hairpin Superfamily:Chaperone J-domain Family:Chaperone J-domain 87 d1sgga_ not modelled 5.8 13 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 88 d1oxja1 not modelled 5.7 7 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 89 c2wwaJ_ not modelled 5.7 33 PDB header:ribosome Chain: J: PDB Molecule:60s ribosomal protein l19; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome 90 c3bgdB_ not modelled 5.6 19 PDB header:transferase Chain: B: PDB Molecule:thiopurine s-methyltransferase; PDBTitle: thiopurine s-methyltransferase 91 c3zqpB_ not modelled 5.5 23 PDB header:dna-binding protein Chain: B: PDB Molecule:terminase small subunit; PDBTitle: crystal structure of the small terminase oligomerization2 domain from a spp1-like bacteriophage 92 d1eg3a2 not modelled 5.4 60 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 93 c1z5xU_ not modelled 5.4 20 PDB header:hormone/growth factor receptor Chain: U: PDB Molecule:ultraspiracle protein (usp) a homologue of rxr; PDBTitle: hemipteran ecdysone receptor ligand-binding domain2 complexed with ponasterone a 94 d1thma_ not modelled 5.4 25 Fold:Subtilisin-like Superfamily:Subtilisin-like Family:Subtilases 95 c3c18B_ not modelled 5.3 14 PDB header:transferase Chain: B: PDB Molecule:nucleotidyltransferase-like protein; PDBTitle: crystal structure of nucleotidyltransferase-like protein2 (zp_00538802.1) from exiguobacterium sibiricum 255-15 at 1.90 a3 resolution 96 c2eamA_ not modelled 5.3 13 PDB header:signaling protein Chain: A: PDB Molecule:putative 47 kda protein; PDBTitle: solution structure of the n-terminal sam-domain of a human2 putative 47 kda protein 97 c2khqA_ not modelled 5.3 10 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: solution nmr structure of a phage integrase ssp19472 fragment 59-159 from staphylococcus saprophyticus,3 northeast structural genomics consortium target syr103b 98 c3lccA_ not modelled 5.2 21 PDB header:transferase Chain: A: PDB Molecule:putative methyl chloride transferase; PDBTitle: structure of a sam-dependent halide methyltransferase from arabidopsis2 thaliana 99 d1r4va_ not modelled 5.1 21 Fold:Histone-fold Superfamily:Histone-fold Family:Bacterial histone-fold protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0