Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	K	S	A	L	F	T	V	R	N	N	E	S	C	P	K	C	G	A	E	L	V	I	R	S	G	K	H	G	P	F	L	G	C	S	Q	Y	P	A	C	D	Y	V	R	P	L	K	S	S	A	D	G	H	I	V	K	V	L	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																																?	?	?	?	?				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	Q	V	C	P	A	C	G	A	N	L	V	L	R	Q	G	R	F	G	M	F	I	G	C	I	N	Y	P	E	C	E	H	T	E	L	I	D	K	P	D	E	T	A	I	T	C	P	Q	C	R	T	G	H	L	V	Q	R	R	S	R
Secondary structure
SS confidence
Disorder																																					?	?	?	?	?	?	?	?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Y	G	K	T	F	H	S	C	D	R	Y	P	E	C	Q	F	A	I	N	F	K	P	I	A	G	E	C	P	E	C	H	Y	P	L	L	I	E	K	K	T	A	Q	G	V	K	H	F	C	A	S	K	Q	C	G	K	P	V	S	A	E
Secondary structure
SS confidence
Disorder																						?			?															?	?														?	?	?	?	?	?	?
Disorder confidence
Sequence
Secondary structure
SS confidence
Disorder
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1i3q chain I Region: 106 - 176 Aligned: 66 Modelled: 68 Confidence: 97.0% Identity: 18% PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution Phyre2 PDB 3h0g chain I Region: 106 - 180 Aligned: 70 Modelled: 72 Confidence: 96.3% Identity: 17% PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe Phyre2 PDB 2gaj chain A Region: 42 - 102 Aligned: 56 Modelled: 61 Confidence: 95.0% Identity: 23% PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase i; PDBTitle: structure of full length topoisomerase i from thermotoga maritima in2 monoclinic crystal form Phyre2 PDB 2fiy chain A domain 1 Region: 1 - 70 Aligned: 55 Modelled: 58 Confidence: 94.5% Identity: 24% Fold: FdhE-like Superfamily: FdhE-like Family: FdhE-like Phyre2 PDB 1pvm chain A domain 3 Region: 147 - 176 Aligned: 30 Modelled: 30 Confidence: 93.8% Identity: 27% Fold: Rubredoxin-like Superfamily: Hypothetical protein Ta0289 C-terminal domain Family: Hypothetical protein Ta0289 C-terminal domain Phyre2 PDB 1dgs chain B Region: 144 - 177 Aligned: 29 Modelled: 34 Confidence: 90.9% Identity: 34% PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis Phyre2 PDB 1dgs chain A domain 1 Region: 13 - 41 Aligned: 24 Modelled: 28 Confidence: 89.0% Identity: 50% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: NAD+-dependent DNA ligase, domain 3 Phyre2 PDB 1twf chain I domain 2 Region: 140 - 176 Aligned: 35 Modelled: 37 Confidence: 88.9% Identity: 23% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 1v9p chain B Region: 142 - 177 Aligned: 31 Modelled: 36 Confidence: 87.2% Identity: 29% PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase Phyre2 PDB 1tdz chain A domain 3 Region: 135 - 176 Aligned: 39 Modelled: 42 Confidence: 85.2% Identity: 21% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins Phyre2 PDB 1nnj chain A Region: 140 - 176 Aligned: 34 Modelled: 37 Confidence: 85.1% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna Phyre2 PDB 1k82 chain D Region: 135 - 175 Aligned: 38 Modelled: 41 Confidence: 84.5% Identity: 29% PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna Phyre2 PDB 1qyp chain A Region: 140 - 176 Aligned: 35 Modelled: 37 Confidence: 83.9% Identity: 29% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 1k3x chain A domain 3 Region: 142 - 175 Aligned: 31 Modelled: 34 Confidence: 83.8% Identity: 13% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: C-terminal, Zn-finger domain of MutM-like DNA repair proteins Phyre2 PDB 2jne chain A Region: 12 - 75 Aligned: 44 Modelled: 64 Confidence: 83.3% Identity: 27% PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. Phyre2 PDB 2jne chain A domain 1 Region: 12 - 75 Aligned: 44 Modelled: 64 Confidence: 83.3% Identity: 27% Fold: Rubredoxin-like Superfamily: YfgJ-like Family: YfgJ-like Phyre2 PDB 2opf chain A Region: 140 - 175 Aligned: 33 Modelled: 36 Confidence: 83.3% Identity: 15% PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate Phyre2 PDB 1yua chain A domain 1 Region: 61 - 95 Aligned: 35 Modelled: 35 Confidence: 82.3% Identity: 29% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Prokaryotic DNA topoisomerase I, a C-terminal fragment Phyre2 PDB 2owo chain A Region: 142 - 177 Aligned: 33 Modelled: 36 Confidence: 81.2% Identity: 18% PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate Phyre2 PDB 1yua chain A Region: 61 - 95 Aligned: 35 Modelled: 35 Confidence: 80.3% Identity: 29% PDB header:dna binding protein Chain: A: PDB Molecule:topoisomerase i; PDBTitle: c-terminal domain of escherichia coli topoisomerase i Phyre2 1 c1i3qI_ 2 c3h0gI_ 3 c2gajA_ 4 d2fiya1 5 d1pvma3 6 c1dgsB_ 7 d1dgsa1 8 d1twfi2 9 c1v9pB_ 10 d1tdza3 11 c1nnjA_ 12 c1k82D_ 13 d1qypa_ 14 d1k3xa3 15 c2jneA_ 16 d2jnea1 17 c2opfA_ 18 d1yuaa1 19 c2owoA_ 20 c1yuaA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1i3qI_ 97.0 18 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution 2 c3h0gI_ 96.3 17 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 3 c2gajA_ 95.0 23 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase i; PDBTitle: structure of full length topoisomerase i from thermotoga maritima in2 monoclinic crystal form 4 d2fiya1 94.5 24 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 5 d1pvma3 93.8 27 Fold:Rubredoxin-like Superfamily:Hypothetical protein Ta0289 C-terminal domain Family:Hypothetical protein Ta0289 C-terminal domain 6 c1dgsB_ 90.9 34 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 7 d1dgsa1 89.0 50 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 8 d1twfi2 88.9 23 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 9 c1v9pB_ 87.2 29 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 10 d1tdza3 85.2 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 11 c1nnjA_ 85.1 24 PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna 12 c1k82D_ 84.5 29 PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna 13 d1qypa_ 83.9 29 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 14 d1k3xa3 83.8 13 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 15 c2jneA_ 83.3 27 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. 16 d2jnea1 83.3 27 Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like 17 c2opfA_ 83.3 15 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 18 d1yuaa1 82.3 29 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment 19 c2owoA_ 81.2 18 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 20 c1yuaA_ 80.3 29 PDB header:dna binding protein Chain: A: PDB Molecule:topoisomerase i; PDBTitle: c-terminal domain of escherichia coli topoisomerase i 21 c2js4A_ not modelled 79.6 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 22 d1l1ta3 not modelled 79.3 15 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 23 d1ee8a3 not modelled 79.1 16 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 24 d1k82a3 not modelled 77.4 16 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 25 c1yuzB_ not modelled 77.2 29 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 26 d1r2za3 not modelled 76.9 13 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 27 c2jvnA_ not modelled 76.7 17 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: domain c of human parp-1 28 c2jr6A_ not modelled 75.5 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 29 c2f5qA_ not modelled 75.3 21 PDB header:hydrolase/dna Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase; PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2 30 d2hf1a1 not modelled 75.2 24 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 31 d2jnya1 not modelled 75.1 12 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 32 d1nuia2 not modelled 74.4 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 33 c2jrpA_ not modelled 73.4 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative cytoplasmic protein; PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86 34 c1ee8A_ not modelled 72.2 24 PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 35 c2hr5B_ not modelled 71.1 25 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 36 d2pk7a1 not modelled 70.9 17 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 37 c2riqA_ not modelled 69.5 22 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: crystal structure of the third zinc-binding domain of human parp-1 38 d1pfta_ not modelled 67.9 34 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 39 d1weoa_ not modelled 67.7 18 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 40 c2lcqA_ not modelled 67.5 20 PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii 41 c2kdxA_ not modelled 67.3 21 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 42 c1dvbA_ not modelled 66.6 26 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 43 c2kpiA_ not modelled 66.4 25 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sco3027; PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58 44 d1wd2a_ not modelled 64.1 25 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 45 c2odxA_ not modelled 63.7 13 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c oxidase polypeptide iv; PDBTitle: solution structure of zn(ii)cox4 46 d1tfia_ not modelled 62.0 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 47 d1lkoa2 not modelled 57.7 26 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 48 d1odha_ not modelled 56.1 26 Fold:GCM domain Superfamily:GCM domain Family:GCM domain 49 d1xm0a1 not modelled 55.0 13 Fold:Mss4-like Superfamily:Mss4-like Family:SelR domain 50 d1dl6a_ not modelled 51.1 33 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 51 d1zina2 not modelled 50.6 23 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 52 d1p3ja2 not modelled 49.3 19 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 53 d1nnqa2 not modelled 48.8 30 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 54 d1s3ga2 not modelled 47.8 19 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 55 d2akla2 not modelled 45.3 24 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:PhnA zinc-binding domain 56 c2zkrz_ not modelled 45.3 28 PDB header:ribosomal protein/rna Chain: Z: PDB Molecule:e site t-rna; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 57 d1yuza2 not modelled 44.8 31 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 58 c1yshD_ not modelled 44.6 28 PDB header:structural protein/rna Chain: D: PDB Molecule:ribosomal protein l37a; PDBTitle: localization and dynamic behavior of ribosomal protein l30e 59 c3tsuA_ not modelled 44.2 20 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 60 d1vqoz1 not modelled 43.8 24 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 61 c2y69S_ not modelled 42.9 22 PDB header:electron transport Chain: S: PDB Molecule:cytochrome c oxidase subunit 5b; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 62 d1jj2y_ not modelled 42.5 31 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 63 c3cc4Z_ not modelled 41.9 48 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit 64 c3lpeF_ not modelled 41.7 30 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 65 d2ak3a2 not modelled 41.6 23 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 66 d1akya2 not modelled 40.8 12 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 67 c4a17Y_ not modelled 40.4 33 PDB header:ribosome Chain: Y: PDB Molecule:rpl37a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 68 d1v54f_ not modelled 39.9 22 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Cytochrome c oxidase Subunit F 69 d1e4va2 not modelled 38.8 12 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 70 c3hcjB_ not modelled 38.7 25 PDB header:oxidoreductase Chain: B: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: structure of msrb from xanthomonas campestris (oxidized2 form) 71 c3a44D_ not modelled 38.6 26 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 72 c3cngC_ not modelled 36.1 18 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 73 c3cezA_ not modelled 33.8 28 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase; PDBTitle: crystal structure of methionine-r-sulfoxide reductase from2 burkholderia pseudomallei 74 d1ffkw_ not modelled 33.0 24 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 75 c2qa4Z_ not modelled 32.6 39 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit 76 c1s1i9_ not modelled 31.7 24 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 77 c3f2cA_ not modelled 31.1 21 PDB header:transferase/dna Chain: A: PDB Molecule:geobacillus kaustophilus dna polc; PDBTitle: dna polymerase polc from geobacillus kaustophilus complex with dna,2 dgtp and mn 78 d2k4xa1 not modelled 30.9 22 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27a 79 d1dfxa2 not modelled 29.8 29 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Desulforedoxin 80 d1k81a_ not modelled 29.0 29 Fold:Zinc-binding domain of translation initiation factor 2 beta Superfamily:Zinc-binding domain of translation initiation factor 2 beta Family:Zinc-binding domain of translation initiation factor 2 beta 81 c3ld0Q_ not modelled 27.9 46 PDB header:gene regulation Chain: Q: PDB Molecule:inhibitor of trap, regulated by t-box (trp) sequence rtpa; PDBTitle: crystal structure of b.licheniformis anti-trap protein, an antagonist2 of trap-rna interactions 82 d1p91a_ not modelled 27.4 32 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase RlmA 83 d1l1da_ not modelled 26.4 13 Fold:Mss4-like Superfamily:Mss4-like Family:SelR domain 84 d6rxna_ not modelled 26.3 20 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 85 d2cona1 not modelled 25.2 17 Fold:Rubredoxin-like Superfamily:NOB1 zinc finger-like Family:NOB1 zinc finger-like 86 c3jyw9_ not modelled 25.1 30 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 87 d1vzia2 not modelled 24.5 17 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Desulforedoxin 88 d2dkta1 not modelled 24.3 18 Fold:CHY zinc finger-like Superfamily:CHY zinc finger-like Family:CHY zinc finger 89 d1lv3a_ not modelled 23.9 16 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Hypothetical zinc finger protein YacG 90 c2gb5B_ not modelled 23.8 26 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 91 d1x4la2 not modelled 21.9 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 92 c2l1uA_ not modelled 21.6 22 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b2, mitochondrial; PDBTitle: structure-functional analysis of mammalian msrb2 protein 93 c2kaoA_ not modelled 21.4 26 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b1; PDBTitle: structure of reduced mouse methionine sulfoxide reductase b12 (sec95cys mutant) 94 d2cu8a1 not modelled 21.3 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 95 c2hu9B_ not modelled 20.5 39 PDB header:metal transport Chain: B: PDB Molecule:mercuric transport protein periplasmic component; PDBTitle: x-ray structure of the archaeoglobus fulgidus copz n-2 terminal domain 96 c2k5rA_ not modelled 19.3 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein xf2673; PDBTitle: solution nmr structure of xf2673 from xylella fastidiosa.2 northeast structural genomics consortium target xfr39 97 d2qam01 not modelled 19.3 17 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 98 d1imla1 not modelled 19.1 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 99 c1xwhA_ not modelled 18.8 19 PDB header:transcription Chain: A: PDB Molecule:autoimmune regulator; PDBTitle: nmr structure of the first phd finger of autoimmune2 regulator protein (aire1): insights into apeced

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0