Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	N	I	F	K	F	S	V	L	T	L	A	V	L	S	L	T	A	C	T	L	V	P	G	Q	N	L	S	T	S	N	K	D	V	I	E	L	P	D	N	Q	Y	D	L	D	K	M	V	N	I	Y	P	V	T	P	G	L	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?															?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	Q	L	R	A	K	P	I	M	S	Q	A	N	P	E	L	E	Q	Q	I	A	N	Y	E	Y	R	I	G	I	G	D	V	L	M	V	T	V	W	D	H	P	E	L	T	T	P	A	G	Q	Y	R	S	A	S	D	T	G	N	W	V
Secondary structure
SS confidence
Disorder				?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																			?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		N	A	D	G	A	I	F	Y	P	Y	I	G	R	L	K	V	A	G	K	T	L	T	Q	V	R	N	E	I	T	A	R	L	D	S	V	I	E	S	P	Q	V	D	V	S	V	A	A	F	R	S	Q	K	A	Y	V	T	G	E	V	S
Secondary structure
SS confidence
Disorder																	?																															?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	S	G	Q	Q	P	I	T	N	I	P	L	T	I	M	D	A	I	N	A	A	G	G	L	T	A	D	A	D	W	R	N	V	V	L	T	Q	N	G	V	K	T	K	V	N	L	Y	A	L	M	Q	R	G	D	L	R	Q	N	K	L
Secondary structure
SS confidence
Disorder										?	?	?	?												?		?																														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	H	P	G	D	I	L	F	I	P	R	N	D	D	L	K	V	F	V	M	G	E	V	G	K	Q	S	T	L	K	M	D	R	S	G	M	T	L	A	E	A	L	G	N	A	E	G	M	N	Q	D	V	A	D	A	T	G	I	F	V
Secondary structure
SS confidence
Disorder														?	?													?					?	?	?														?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		I	R	A	T	Q	N	K	Q	N	G	K	I	A	N	I	Y	Q	L	N	A	K	D	A	S	A	M	I	L	G	T	E	F	Q	L	E	P	Y	D	I	V	Y	V	T	T	A	P	L	A	R	W	N	R	V	I	S	L	L	V	P	T
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?												?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Sequence		I	S	G	V	H	D	L	T	E	T	S	R	W	I	Q	T	W	P	N
Secondary structure
SS confidence
Disorder																?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2j58 chain G Region: 22 - 376 Aligned: 355 Modelled: 355 Confidence: 100.0% Identity: 74% PDB header:membrane protein Chain: G: PDB Molecule:outer membrane lipoprotein wza; PDBTitle: the structure of wza Phyre2 PDB 2w8i chain G Region: 24 - 345 Aligned: 322 Modelled: 322 Confidence: 100.0% Identity: 76% PDB header:membrane protein Chain: G: PDB Molecule:putative outer membrane lipoprotein wza; PDBTitle: crystal structure of wza24-345. Phyre2 PDB 3p42 chain D Region: 170 - 359 Aligned: 169 Modelled: 187 Confidence: 99.9% Identity: 21% PDB header:unknown function Chain: D: PDB Molecule:predicted protein; PDBTitle: structure of gfcc (ymcb), protein encoded by the e. coli group 42 capsule operon Phyre2 PDB 2fug chain 1 domain 3 Region: 255 - 287 Aligned: 32 Modelled: 33 Confidence: 88.8% Identity: 19% Fold: beta-Grasp (ubiquitin-like) Superfamily: Nqo1 middle domain-like Family: Nqo1 middle domain-like Phyre2 PDB 2fug chain A Region: 251 - 287 Aligned: 36 Modelled: 37 Confidence: 84.7% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Phyre2 PDB 1ghh chain A Region: 140 - 178 Aligned: 39 Modelled: 39 Confidence: 77.2% Identity: 18% Fold: DNA damage-inducible protein DinI Superfamily: DNA damage-inducible protein DinI Family: DNA damage-inducible protein DinI Phyre2 PDB 2xdv chain A Region: 230 - 285 Aligned: 56 Modelled: 56 Confidence: 62.9% Identity: 16% PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 Phyre2 PDB 3uyj chain A Region: 238 - 262 Aligned: 25 Modelled: 25 Confidence: 56.8% Identity: 36% PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg Phyre2 PDB 1vrb chain A domain 1 Region: 232 - 262 Aligned: 31 Modelled: 31 Confidence: 53.0% Identity: 19% Fold: Double-stranded beta-helix Superfamily: Clavaminate synthase-like Family: Asparaginyl hydroxylase-like Phyre2 PDB 1lr5 chain A Region: 211 - 262 Aligned: 51 Modelled: 52 Confidence: 47.0% Identity: 14% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 2zpm chain A Region: 334 - 357 Aligned: 24 Modelled: 21 Confidence: 45.9% Identity: 29% PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b Phyre2 PDB 1rc6 chain A Region: 239 - 274 Aligned: 31 Modelled: 36 Confidence: 44.6% Identity: 10% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: YlbA-like Phyre2 PDB 3al6 chain A Region: 239 - 261 Aligned: 23 Modelled: 23 Confidence: 43.4% Identity: 35% PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 Phyre2 PDB 1zof chain A domain 1 Region: 118 - 162 Aligned: 43 Modelled: 45 Confidence: 43.3% Identity: 14% Fold: Thioredoxin fold Superfamily: Thioredoxin-like Family: Glutathione peroxidase-like Phyre2 PDB 3u7z chain A Region: 256 - 340 Aligned: 84 Modelled: 85 Confidence: 41.0% Identity: 11% PDB header:metal binding protein Chain: A: PDB Molecule:putative metal binding protein rumgna_00854; PDBTitle: crystal structure of a putative metal binding protein rumgna_008542 (zp_02040092.1) from ruminococcus gnavus atcc 29149 at 1.30 a3 resolution Phyre2 PDB 1x82 chain A Region: 239 - 302 Aligned: 64 Modelled: 64 Confidence: 39.8% Identity: 8% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Glucose-6-phosphate isomerase, GPI Phyre2 PDB 2xxz chain A Region: 219 - 261 Aligned: 43 Modelled: 43 Confidence: 39.8% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 6b; PDBTitle: crystal structure of the human jmjd3 jumonji domain Phyre2 PDB 3eyt chain A Region: 118 - 154 Aligned: 32 Modelled: 37 Confidence: 39.2% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spoa0173; PDBTitle: crystal structure of thioredoxin-like superfamily protein spoa0173 Phyre2 PDB 2opk chain C Region: 206 - 257 Aligned: 44 Modelled: 52 Confidence: 38.1% Identity: 16% PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution Phyre2 PDB 3k2o chain B Region: 239 - 251 Aligned: 13 Modelled: 13 Confidence: 37.8% Identity: 38% PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase Phyre2 1 c2j58G_ 2 c2w8iG_ 3 c3p42D_ 4 d2fug13 5 c2fugA_ 6 d1ghha_ 7 c2xdvA_ 8 c3uyjA_ 9 d1vrba1 10 d1lr5a_ 11 c2zpmA_ 12 d1rc6a_ 13 c3al6A_ 14 d1zofa1 15 c3u7zA_ 16 d1x82a_ 17 c2xxzA_ 18 c3eytA_ 19 c2opkC_ 20 c3k2oB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2j58G_ 100.0 74 PDB header:membrane protein Chain: G: PDB Molecule:outer membrane lipoprotein wza; PDBTitle: the structure of wza 2 c2w8iG_ 100.0 76 PDB header:membrane protein Chain: G: PDB Molecule:putative outer membrane lipoprotein wza; PDBTitle: crystal structure of wza24-345. 3 c3p42D_ 99.9 21 PDB header:unknown function Chain: D: PDB Molecule:predicted protein; PDBTitle: structure of gfcc (ymcb), protein encoded by the e. coli group 42 capsule operon 4 d2fug13 88.8 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:Nqo1 middle domain-like Family:Nqo1 middle domain-like 5 c2fugA_ 84.7 17 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 6 d1ghha_ 77.2 18 Fold:DNA damage-inducible protein DinI Superfamily:DNA damage-inducible protein DinI Family:DNA damage-inducible protein DinI 7 c2xdvA_ 62.9 16 PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 8 c3uyjA_ 56.8 36 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg 9 d1vrba1 53.0 19 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 10 d1lr5a_ 47.0 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 11 c2zpmA_ 45.9 29 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b 12 d1rc6a_ 44.6 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 13 c3al6A_ 43.4 35 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 14 d1zofa1 43.3 14 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 15 c3u7zA_ 41.0 11 PDB header:metal binding protein Chain: A: PDB Molecule:putative metal binding protein rumgna_00854; PDBTitle: crystal structure of a putative metal binding protein rumgna_008542 (zp_02040092.1) from ruminococcus gnavus atcc 29149 at 1.30 a3 resolution 16 d1x82a_ 39.8 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 17 c2xxzA_ 39.8 19 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 6b; PDBTitle: crystal structure of the human jmjd3 jumonji domain 18 c3eytA_ 39.2 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spoa0173; PDBTitle: crystal structure of thioredoxin-like superfamily protein spoa0173 19 c2opkC_ 38.1 16 PDB header:isomerase Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a putative mannose-6-phosphate isomerase2 (reut_a1446) from ralstonia eutropha jmp134 at 2.10 a resolution 20 c3k2oB_ 37.8 38 PDB header:oxidoreductase Chain: B: PDB Molecule:bifunctional arginine demethylase and lysyl-hydroxylase PDBTitle: structure of an oxygenase 21 c3razA_ not modelled 37.3 3 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-related protein; PDBTitle: the crystal structure of thioredoxin-related protein from neisseria2 meningitidis serogroup b 22 d1fe0a_ not modelled 37.1 14 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 23 d1h2ka_ not modelled 35.3 29 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Hypoxia-inducible factor HIF ihhibitor (FIH1) 24 d1wp0a1 not modelled 33.2 12 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 25 c3lorB_ not modelled 32.5 16 PDB header:isomerase Chain: B: PDB Molecule:thiol-disulfide isomerase and thioredoxins; PDBTitle: the crystal structure of a thiol-disulfide isomerase from2 corynebacterium glutamicum to 2.2a 26 d1sfna_ not modelled 32.4 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 27 d1rwua_ not modelled 32.1 12 Fold:Ferredoxin-like Superfamily:YbeD/HP0495-like Family:YbeD-like 28 c1rwuA_ not modelled 32.1 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0250 protein ybed; PDBTitle: solution structure of conserved protein ybed from e. coli 29 c3cewA_ not modelled 31.9 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205 30 c2yztA_ not modelled 31.5 6 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha1756; PDBTitle: crystal structure of uncharacterized conserved protein from thermus2 thermophilus hb8 31 d1zx5a1 not modelled 31.1 24 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 32 d1sq4a_ not modelled 31.0 9 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 33 c1sefA_ not modelled 30.9 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis 34 d1sefa_ not modelled 30.9 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like 35 c2r37A_ not modelled 30.8 22 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase 3; PDBTitle: crystal structure of human glutathione peroxidase 3 (selenocysteine to2 glycine mutant) 36 c2r32A_ not modelled 29.3 18 PDB header:immune system Chain: A: PDB Molecule:gcn4-pii/tumor necrosis factor ligand PDBTitle: crystal structure of human gitrl variant 37 d1z5ye1 not modelled 27.7 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 38 d1y7ma2 not modelled 27.6 4 Fold:LysM domain Superfamily:LysM domain Family:LysM domain 39 c3ibmB_ not modelled 27.2 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 40 d1we0a1 not modelled 27.0 23 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 41 d1q44a_ not modelled 26.6 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 42 c3d0fA_ not modelled 26.4 18 PDB header:transferase Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca; PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718 43 d1qmva_ not modelled 26.3 13 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 44 d1j3pa_ not modelled 26.0 10 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI 45 c2h8kA_ not modelled 25.3 14 PDB header:transferase Chain: A: PDB Molecule:sult1c3 splice variant d; PDBTitle: human sulfotranferase sult1c3 in complex with pap 46 c3cmiA_ not modelled 25.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxiredoxin hyr1; PDBTitle: crystal structure of glutathione-dependent phospholipid peroxidase2 hyr1 from the yeast saccharomyces cerevisiae 47 d2dsya1 not modelled 24.6 20 Fold:TTHA1013/TTHA0281-like Superfamily:TTHA1013/TTHA0281-like Family:TTHA0281-like 48 c3kh7A_ not modelled 24.6 15 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of the periplasmic soluble domain of reduced ccmg2 from pseudomonas aeruginosa 49 c3d82A_ not modelled 24.3 30 PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution 50 d1knga_ not modelled 23.9 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 51 d1uija2 not modelled 23.6 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 52 c2v1mA_ not modelled 23.4 16 PDB header:oxidoreductase Chain: A: PDB Molecule:glutathione peroxidase; PDBTitle: crystal structure of schistosoma mansoni glutathione2 peroxidase 53 c3or5A_ not modelled 22.7 13 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein, thioredoxin family PDBTitle: crystal structure of thiol:disulfide interchange protein, thioredoxin2 family protein from chlorobium tepidum tls 54 c2rogA_ not modelled 22.7 30 PDB header:metal binding protein Chain: A: PDB Molecule:heavy metal binding protein; PDBTitle: solution structure of thermus thermophilus hb8 ttha17182 protein in living e. coli cells 55 c3h8uA_ not modelled 22.5 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution 56 d1fmja_ not modelled 22.5 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 57 c2hhzA_ not modelled 22.3 11 PDB header:oxidoreductase Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related; PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related2 protein (ssuidraft_2804) from streptococcus suis 89/1591 at 2.00 a3 resolution 58 c3lwaA_ not modelled 22.3 9 PDB header:isomerase Chain: A: PDB Molecule:secreted thiol-disulfide isomerase; PDBTitle: the crystal structure of a secreted thiol-disulfide2 isomerase from corynebacterium glutamicum to 1.75a 59 c3jxoB_ not modelled 22.3 11 PDB header:transport protein Chain: B: PDB Molecule:trka-n domain protein; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima 60 c3drnB_ not modelled 22.3 8 PDB header:oxidoreductase Chain: B: PDB Molecule:peroxiredoxin, bacterioferritin comigratory protein PDBTitle: the crystal structure of bcp1 from sulfolobus sulfataricus 61 d1prxa_ not modelled 22.1 4 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 62 d1gp1a_ not modelled 22.0 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 63 c3h7hA_ not modelled 22.0 21 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt4; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) 64 d1uika2 not modelled 21.9 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 65 d1te7a_ not modelled 21.3 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:yqfB-like 66 d2d40a1 not modelled 21.3 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like 67 c2wbqA_ not modelled 21.1 15 PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine 68 d1pmia_ not modelled 20.4 7 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 69 c2q30C_ not modelled 20.4 17 PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution 70 c3h1yA_ not modelled 20.1 15 PDB header:isomerase Chain: A: PDB Molecule:mannose-6-phosphate isomerase; PDBTitle: crystal structure of mannose 6-phosphate isomerase from2 salmonella typhimurium bound to substrate (f6p)and metal3 atom (zn) 71 d1xv1a_ not modelled 20.1 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 72 d2phna1 not modelled 19.8 14 Fold:CofE-like Superfamily:CofE-like Family:CofE-like 73 d1q20a_ not modelled 19.4 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 74 c2h66G_ not modelled 19.3 12 PDB header:structural genomics/oxidoreductase Chain: G: PDB Molecule:pv-pf14_0368; PDBTitle: the crystal structure of plasmodium vivax 2-cys2 peroxiredoxin 75 d1yexa1 not modelled 19.2 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 76 c2og5A_ not modelled 19.1 23 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxygenase; PDBTitle: crystal structure of asparagine oxygenase (asno) 77 d1e2ya_ not modelled 18.9 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 78 d1ds1a_ not modelled 18.7 38 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Clavaminate synthase 79 d2b8ma1 not modelled 18.7 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:MJ0764-like 80 c3bcwB_ not modelled 18.5 23 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution 81 d1o5ua_ not modelled 18.1 27 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Hypothetical protein TM1112 82 c3kw0D_ not modelled 18.0 17 PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution 83 d1j99a_ not modelled 18.0 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 84 c3ia1A_ not modelled 17.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:thio-disulfide isomerase/thioredoxin; PDBTitle: crystal structure of thio-disulfide isomerase from thermus2 thermophilus 85 c2v2gC_ not modelled 17.7 9 PDB header:oxidoreductase Chain: C: PDB Molecule:peroxiredoxin 6; PDBTitle: crystal structure of the c45s mutant of the peroxiredoxin 62 of arenicola marina. monoclinic form 86 c2hc8A_ not modelled 17.5 21 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 87 d1sb6a_ not modelled 17.4 21 Fold:Ferredoxin-like Superfamily:HMA, heavy metal-associated domain Family:HMA, heavy metal-associated domain 88 c3jzvA_ not modelled 17.4 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain. 89 c3gl3D_ not modelled 16.9 16 PDB header:oxidoreductase Chain: D: PDB Molecule:putative thiol:disulfide interchange protein PDBTitle: crystal structure of a putative thiol:disulfide interchange2 protein dsbe from chlorobium tepidum 90 d1zud21 not modelled 16.9 7 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 91 d1qq2a_ not modelled 16.9 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 92 c2fpeB_ not modelled 16.9 20 PDB header:signaling protein Chain: B: PDB Molecule:c-jun-amino-terminal kinase interacting protein PDBTitle: conserved dimerization of the ib1 src-homology 3 domain 93 c2rqeA_ not modelled 16.7 17 PDB header:sugar binding protein Chain: A: PDB Molecule:beta-1,3-glucan-binding protein; PDBTitle: solution structure of the silkworm bgrp/gnbp3 n-terminal2 domain reveals the mechanism for b-1,3-glucan specific3 recognition 94 c3k6qB_ not modelled 16.1 15 PDB header:ligand binding protein Chain: B: PDB Molecule:putative ligand binding protein; PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution 95 c2kytA_ not modelled 16.1 14 PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain 96 d1qwra_ not modelled 16.0 17 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Type I phosphomannose isomerase 97 d1g3ma_ not modelled 15.4 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 98 c2gu9B_ not modelled 15.4 20 PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure 99 d1xcca_ not modelled 15.4 9 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0