Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	H	L	L	P	E	L	A	S	H	H	A	V	S	I	P	E	L	L	V	S	R	D	E	R	Q	A	R	Q	H	V	W	L	K	R	H	P	V	P	L	V	S	F	T	V	V	A	P	G	P	I	K	D	S	E	V	T	R	R	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	N	H	G	V	T	A	L	R	A	L	A	A	K	Q	G	W	Q	I	Q	E	Q	A	A	L	V	S	A	S	G	P	E	G	M	L	S	I	A	A	P	A	R	D	L	K	L	A	T	I	E	L	E	H	S	H	P	L	G	R	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		W	D	I	D	V	L	T	P	E	G	E	I	L	S	R	R	D	Y	S	L	P	P	R	R	C	L	L	C	E	Q	S	A	A	V	C	A	R	G	K	T	H	Q	L	T	D	L	L	N	R	M	E	A	L	L	N	D	V	D	A	C
Secondary structure
SS confidence
Disorder											?				?																								?	?	?	?																		?	?
Disorder confidence
		.	.	.
Sequence		N	V	N
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3mcn chain A Region: 40 - 141 Aligned: 93 Modelled: 102 Confidence: 84.7% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine PDBTitle: crystal structure of the 6-hyroxymethyl-7,8-dihydropterin2 pyrophosphokinase dihydropteroate synthase bifunctional enzyme from3 francisella tularensis Phyre2 PDB 1f6y chain A Region: 23 - 146 Aligned: 109 Modelled: 113 Confidence: 67.3% Identity: 15% Fold: TIM beta/alpha-barrel Superfamily: Dihydropteroate synthetase-like Family: Methyltetrahydrofolate-utiluzing methyltransferases Phyre2 PDB 2cg8 chain B Region: 93 - 141 Aligned: 47 Modelled: 49 Confidence: 58.3% Identity: 38% PDB header:lyase/transferase Chain: B: PDB Molecule:dihydroneopterin aldolase 6-hydroxymethyl-7,8- PDBTitle: the bifunctional dihydroneopterin aldolase 6-hydroxymethyl-2 7,8-dihydropterin synthase from streptococcus pneumoniae Phyre2 PDB 3bof chain A domain 1 Region: 23 - 146 Aligned: 103 Modelled: 104 Confidence: 42.5% Identity: 15% Fold: TIM beta/alpha-barrel Superfamily: Dihydropteroate synthetase-like Family: Methyltetrahydrofolate-utiluzing methyltransferases Phyre2 PDB 3a1y chain G Region: 89 - 129 Aligned: 41 Modelled: 41 Confidence: 40.5% Identity: 27% PDB header:ribosomal protein Chain: G: PDB Molecule:acidic ribosomal protein p0; PDBTitle: the structure of protein complex Phyre2 PDB 1f9y chain A Region: 93 - 141 Aligned: 49 Modelled: 49 Confidence: 39.5% Identity: 20% Fold: Ferredoxin-like Superfamily: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK Family: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK Phyre2 PDB 3k13 chain A Region: 23 - 144 Aligned: 110 Modelled: 111 Confidence: 37.7% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron Phyre2 PDB 2bpb chain B Region: 143 - 179 Aligned: 37 Modelled: 37 Confidence: 36.7% Identity: 8% PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella Phyre2 PDB 2qx0 chain A Region: 40 - 141 Aligned: 93 Modelled: 102 Confidence: 36.4% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:7,8-dihydro-6-hydroxymethylpterin- PDBTitle: crystal structure of yersinia pestis hppk (ternary complex) Phyre2 PDB 2yci chain X Region: 23 - 144 Aligned: 107 Modelled: 122 Confidence: 35.9% Identity: 14% PDB header:transferase Chain: X: PDB Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein PDBTitle: methyltransferase native Phyre2 PDB 1glu chain A Region: 141 - 152 Aligned: 12 Modelled: 12 Confidence: 35.0% Identity: 50% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Nuclear receptor Phyre2 PDB 1xyr chain 6 Region: 45 - 53 Aligned: 9 Modelled: 9 Confidence: 31.5% Identity: 33% PDB header:virus Chain: 6: PDB Molecule:genome polyprotein, coat protein vp3; PDB Fragment:residues 620-630 PDBTitle: poliovirus 135s cell entry intermediate Phyre2 PDB 1s6l chain A domain 1 Region: 2 - 39 Aligned: 38 Modelled: 38 Confidence: 30.7% Identity: 29% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MerB N-terminal domain-like Phyre2 PDB 1dsz chain B Region: 140 - 152 Aligned: 13 Modelled: 13 Confidence: 29.6% Identity: 15% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Nuclear receptor Phyre2 PDB 1nm8 chain A domain 1 Region: 118 - 138 Aligned: 21 Modelled: 21 Confidence: 26.8% Identity: 19% Fold: CoA-dependent acyltransferases Superfamily: CoA-dependent acyltransferases Family: Choline/Carnitine O-acyltransferase Phyre2 PDB 1ndb chain A domain 1 Region: 118 - 138 Aligned: 21 Modelled: 21 Confidence: 26.5% Identity: 19% Fold: CoA-dependent acyltransferases Superfamily: CoA-dependent acyltransferases Family: Choline/Carnitine O-acyltransferase Phyre2 PDB 1lo1 chain A Region: 140 - 152 Aligned: 13 Modelled: 13 Confidence: 25.9% Identity: 46% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Nuclear receptor Phyre2 PDB 1kb6 chain B Region: 142 - 152 Aligned: 11 Modelled: 11 Confidence: 25.5% Identity: 45% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Nuclear receptor Phyre2 PDB 1r4i chain A Region: 141 - 152 Aligned: 12 Modelled: 12 Confidence: 24.6% Identity: 42% PDB header:transcription/dna Chain: A: PDB Molecule:androgen receptor; PDBTitle: crystal structure of androgen receptor dna-binding domain2 bound to a direct repeat response element Phyre2 PDB 1r4i chain A Region: 141 - 152 Aligned: 12 Modelled: 12 Confidence: 24.6% Identity: 42% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: Nuclear receptor Phyre2 1 c3mcnA_ 2 d1f6ya_ 3 c2cg8B_ 4 d3bofa1 5 c3a1yG_ 6 d1f9ya_ 7 c3k13A_ 8 c2bpbB_ 9 c2qx0A_ 10 c2yciX_ 11 d1glua_ 12 c1xyr6_ 13 d1s6la1 14 d1dszb_ 15 d1nm8a1 16 d1ndba1 17 d1lo1a_ 18 d1kb6b_ 19 c1r4iA_ 20 d1r4ia_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3mcnA_ 84.7 18 PDB header:transferase Chain: A: PDB Molecule:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine PDBTitle: crystal structure of the 6-hyroxymethyl-7,8-dihydropterin2 pyrophosphokinase dihydropteroate synthase bifunctional enzyme from3 francisella tularensis 2 d1f6ya_ 67.3 15 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 3 c2cg8B_ 58.3 38 PDB header:lyase/transferase Chain: B: PDB Molecule:dihydroneopterin aldolase 6-hydroxymethyl-7,8- PDBTitle: the bifunctional dihydroneopterin aldolase 6-hydroxymethyl-2 7,8-dihydropterin synthase from streptococcus pneumoniae 4 d3bofa1 42.5 15 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 5 c3a1yG_ 40.5 27 PDB header:ribosomal protein Chain: G: PDB Molecule:acidic ribosomal protein p0; PDBTitle: the structure of protein complex 6 d1f9ya_ 39.5 20 Fold:Ferredoxin-like Superfamily:6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK Family:6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 7 c3k13A_ 37.7 12 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase; PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron 8 c2bpbB_ 36.7 8 PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella 9 c2qx0A_ 36.4 17 PDB header:transferase Chain: A: PDB Molecule:7,8-dihydro-6-hydroxymethylpterin- PDBTitle: crystal structure of yersinia pestis hppk (ternary complex) 10 c2yciX_ 35.9 14 PDB header:transferase Chain: X: PDB Molecule:5-methyltetrahydrofolate corrinoid/iron sulfur protein PDBTitle: methyltransferase native 11 d1glua_ 35.0 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 12 c1xyr6_ 31.5 33 PDB header:virus Chain: 6: PDB Molecule:genome polyprotein, coat protein vp3; PDB Fragment:residues 620-630 PDBTitle: poliovirus 135s cell entry intermediate 13 d1s6la1 30.7 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MerB N-terminal domain-like 14 d1dszb_ 29.6 15 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 15 d1nm8a1 26.8 19 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 16 d1ndba1 26.5 19 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 17 d1lo1a_ 25.9 46 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 18 d1kb6b_ 25.5 45 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 19 c1r4iA_ 24.6 42 PDB header:transcription/dna Chain: A: PDB Molecule:androgen receptor; PDBTitle: crystal structure of androgen receptor dna-binding domain2 bound to a direct repeat response element 20 d1r4ia_ 24.6 42 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 21 d1cbka_ not modelled 22.7 18 Fold:Ferredoxin-like Superfamily:6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK Family:6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 22 c1no3A_ not modelled 22.1 37 PDB header:oxidoreductase Chain: A: PDB Molecule:lipoxygenase-3; PDBTitle: refined structure of soybean lipoxygenase-3 with 4-nitrocatechol at2 2.15 angstrom resolution 23 d3bnea1 not modelled 22.0 33 Fold:Lipoxigenase Superfamily:Lipoxigenase Family:Plant lipoxigenases 24 d1hcqa_ not modelled 21.9 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 25 c1u22A_ not modelled 20.1 17 PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate-- PDBTitle: a. thaliana cobalamine independent methionine synthase 26 d1hraa_ not modelled 18.6 17 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 27 c2envA_ not modelled 18.6 25 PDB header:transcription Chain: A: PDB Molecule:peroxisome proliferator-activated receptor delta; PDBTitle: solution sturcture of the c4-type zinc finger domain from2 human peroxisome proliferator-activated receptor delta 28 d1phza1 not modelled 18.5 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 29 c1t7qA_ not modelled 17.9 19 PDB header:transferase Chain: A: PDB Molecule:carnitine acetyltransferase; PDBTitle: crystal structure of the f565a mutant of murine carnitine2 acetyltransferase in complex with carnitine and coa 30 d1ynwa1 not modelled 17.7 42 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 31 d1r4ra_ not modelled 17.4 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 32 c2h4tB_ not modelled 17.4 29 PDB header:transferase Chain: B: PDB Molecule:carnitine o-palmitoyltransferase ii, PDBTitle: crystal structure of rat carnitine palmitoyltransferase ii 33 d1u1ha2 not modelled 16.1 17 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Cobalamin-independent methionine synthase 34 c1nj2A_ not modelled 16.0 23 PDB header:ligase Chain: A: PDB Molecule:proline-trna synthetase; PDBTitle: crystal structure of prolyl-trna synthetase from methanothermobacter2 thermautotrophicus 35 c2e9hA_ not modelled 15.9 12 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5; PDBTitle: solution structure of the eif-5_eif-2b domain from human2 eukaryotic translation initiation factor 5 36 c1qfqB_ not modelled 15.4 31 PDB header:transcription/rna Chain: B: PDB Molecule:36-mer n-terminal peptide of the n protein; PDBTitle: bacteriophage lambda n-protein-nutboxb-rna complex 37 d1nj1a2 not modelled 15.2 30 Fold:IF3-like Superfamily:C-terminal domain of ProRS Family:C-terminal domain of ProRS 38 d1hc7a3 not modelled 15.2 30 Fold:IF3-like Superfamily:C-terminal domain of ProRS Family:C-terminal domain of ProRS 39 c2y9zA_ not modelled 15.1 7 PDB header:transcription Chain: A: PDB Molecule:imitation switch protein 1 (del_atpase); PDBTitle: chromatin remodeling factor isw1a(del_atpase) in dna complex 40 c2eblA_ not modelled 14.5 14 PDB header:transcription Chain: A: PDB Molecule:coup transcription factor 1; PDBTitle: solution structure of the zinc finger, c4-type domain of2 human coup transcription factor 1 41 d1lata_ not modelled 14.4 50 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 42 d1naqa_ not modelled 14.4 11 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 43 c2fyoA_ not modelled 14.1 29 PDB header:transferase Chain: A: PDB Molecule:carnitine o-palmitoyltransferase ii, PDBTitle: crystal structure of rat carnitine palmitoyltransferase 22 in space group p43212 44 d1rrha1 not modelled 13.7 30 Fold:Lipoxigenase Superfamily:Lipoxigenase Family:Plant lipoxigenases 45 d1nzaa_ not modelled 13.0 11 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 46 d1g2ra_ not modelled 12.9 18 Fold:YlxR-like Superfamily:YlxR-like Family:YlxR-like 47 d1z5ye1 not modelled 12.8 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 48 c1xk8A_ not modelled 12.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:divalent cation tolerant protein cuta; PDBTitle: divalent cation tolerant protein cuta from homo sapiens2 o60888 49 d2zfha1 not modelled 12.7 13 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 50 d1vjea_ not modelled 12.4 16 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS 51 c2x4jA_ not modelled 11.6 67 PDB header:viral protein Chain: A: PDB Molecule:hypothetical protein orf137; PDBTitle: crystal structure of orf137 from pyrobaculum spherical2 virus 52 d1j6xa_ not modelled 11.5 19 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS 53 c2zfhA_ not modelled 11.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cuta; PDBTitle: crystal structure of putative cuta1 from homo sapiens at 2.05a2 resolution 54 d1kr4a_ not modelled 11.5 16 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 55 c2nuhA_ not modelled 11.5 21 PDB header:unknown function Chain: A: PDB Molecule:periplasmic divalent cation tolerance protein; PDBTitle: crystal structure of cuta from the phytopathgen bacterium xylella2 fastidiosa 56 c2p0gB_ not modelled 11.4 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:selenoprotein w-related protein; PDBTitle: crystal structure of selenoprotein w-related protein from2 vibrio cholerae. northeast structural genomics target vcr75 57 d1ukua_ not modelled 11.2 8 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 58 c2dcuB_ not modelled 11.1 12 PDB header:translation Chain: B: PDB Molecule:translation initiation factor 2 beta subunit; PDBTitle: crystal structure of translation initiation factor aif2betagamma2 heterodimer with gdp 59 c1neeA_ not modelled 11.0 16 PDB header:translation Chain: A: PDB Molecule:probable translation initiation factor 2 beta PDBTitle: structure of archaeal translation factor aif2beta from2 methanobacterium thermoautrophicum 60 c3dexA_ not modelled 10.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sav_2001; PDBTitle: crystal structure of sav_2001 protein from streptomyces2 avermitilis, northeast structural genomics consortium3 target svr107. 61 c2kpaA_ not modelled 10.8 27 PDB header:hydrolase Chain: A: PDB Molecule:arno(375-400); PDBTitle: specific motifs of the v-atpase a2-subunit isoform interact2 with catalytic and regulatory domains of arno 62 c2ojlB_ not modelled 10.6 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of q7waf1_borpa from bordetella parapertussis.2 northeast structural genomics target bpr68. 63 c3ialB_ not modelled 10.5 33 PDB header:ligase Chain: B: PDB Molecule:prolyl-trna synthetase; PDBTitle: giardia lamblia prolyl-trna synthetase in complex with prolyl-2 adenylate 64 d2hfva1 not modelled 10.2 28 Fold:Ferredoxin-like Superfamily:GlnB-like Family:RPA1041-like 65 d1j98a_ not modelled 10.1 21 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS 66 c3bboY_ not modelled 10.1 21 PDB header:ribosome Chain: Y: PDB Molecule:ribosomal protein l28; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 67 d1tx2a_ not modelled 9.4 14 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 68 c1tx2A_ not modelled 9.4 14 PDB header:transferase Chain: A: PDB Molecule:dhps, dihydropteroate synthase; PDBTitle: dihydropteroate synthetase, with bound inhibitor manic, from bacillus2 anthracis 69 c3mwbA_ not modelled 9.4 19 PDB header:lyase Chain: A: PDB Molecule:prephenate dehydratase; PDBTitle: the crystal structure of prephenate dehydratase in complex with l-phe2 from arthrobacter aurescens to 2.0a 70 d2jz6a1 not modelled 9.2 20 Fold:L28p-like Superfamily:L28p-like Family:Ribosomal protein L28 71 c3ahpA_ not modelled 9.1 14 PDB header:electron transport Chain: A: PDB Molecule:cuta1; PDBTitle: crystal structure of stable protein, cuta1, from a psychrotrophic2 bacterium shewanella sp. sib1 72 d1j6wa_ not modelled 9.1 19 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:Autoinducer-2 production protein LuxS 73 d1pbya1 not modelled 9.0 5 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 74 c2hfvA_ not modelled 8.7 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa1041; PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90. 75 d2es7a1 not modelled 8.4 19 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:HyaE-like 76 d2nllb_ not modelled 8.3 30 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 77 d2qamz1 not modelled 8.3 16 Fold:L28p-like Superfamily:L28p-like Family:Ribosomal protein L28 78 d1dsza_ not modelled 8.2 22 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 79 d1k5oa_ not modelled 8.2 39 Fold:Myosin phosphatase inhibitor 17kDa protein, CPI-17 Superfamily:Myosin phosphatase inhibitor 17kDa protein, CPI-17 Family:Myosin phosphatase inhibitor 17kDa protein, CPI-17 80 d1vhfa_ not modelled 8.1 16 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 81 d1j2na_ not modelled 7.8 36 Fold:Myosin phosphatase inhibitor 17kDa protein, CPI-17 Superfamily:Myosin phosphatase inhibitor 17kDa protein, CPI-17 Family:Myosin phosphatase inhibitor 17kDa protein, CPI-17 82 d1kb2a_ not modelled 7.7 40 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 83 d1cita_ not modelled 7.7 44 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 84 d1p1la_ not modelled 7.6 8 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 85 c1a92B_ not modelled 7.5 35 PDB header:leucine zipper Chain: B: PDB Molecule:delta antigen; PDBTitle: oligomerization domain of hepatitis delta antigen 86 c3jyw8_ not modelled 7.5 17 PDB header:ribosome Chain: 8: PDB Molecule:60s ribosomal protein lp0; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 87 d1xl7a1 not modelled 7.2 35 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase 88 c2xm5A_ not modelled 6.9 12 PDB header:transferase Chain: A: PDB Molecule:cloq; PDBTitle: structural and mechanistic analysis of the magnesium-2 independent aromatic prenyltransferase cloq from the3 clorobiocin biosynthetic pathway 89 c2zomC_ not modelled 6.9 16 PDB header:unknown function Chain: C: PDB Molecule:protein cuta, chloroplast, putative, expressed; PDBTitle: crystal structure of cuta1 from oryza sativa 90 d2qmwa2 not modelled 6.8 14 Fold:Ferredoxin-like Superfamily:ACT-like Family:Phenylalanine metabolism regulatory domain 91 c2kpbA_ not modelled 6.8 27 PDB header:hydrolase Chain: A: PDB Molecule:arno-p(375-400); PDBTitle: specific motifs of the v-atpase a2-subunit isoform interact2 with catalytic and regulatory domains of arno 92 d1jmxa1 not modelled 6.8 8 Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 93 d1ef4a_ not modelled 6.7 50 Fold:DNA/RNA-binding 3-helical bundle Superfamily:RNA polymerase subunit RPB10 Family:RNA polymerase subunit RPB10 94 c3swfA_ not modelled 6.7 17 PDB header:transport protein Chain: A: PDB Molecule:cgmp-gated cation channel alpha-1; PDBTitle: cnga1 621-690 containing clz domain 95 c1yx7A_ not modelled 6.5 12 PDB header:metal binding protein Chain: A: PDB Molecule:calsensin; PDBTitle: nmr structure of calsensin, energy minimized average2 structure. 96 d2d8va1 not modelled 6.4 38 Fold:B-box zinc-binding domain Superfamily:B-box zinc-binding domain Family:B-box zinc-binding domain 97 d1yuza2 not modelled 6.2 14 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 98 c1lj2B_ not modelled 6.1 33 PDB header:viral protein/ translation Chain: B: PDB Molecule:nonstructural rna-binding protein 34; PDBTitle: recognition of eif4g by rotavirus nsp3 reveals a basis for2 mrna circularization 99 d1t1ua1 not modelled 6.1 25 Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0