Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	V	E	F	S	H	E	Y	W	M	R	H	A	L	T	L	A	K	R	A	W	D	E	R	E	V	P	V	G	A	V	L	V	H	N	N	R	V	I	G	E	G	W	N	R	P	I	G	R	H	D	P	T	A	H	A	E	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		M	A	L	R	Q	G	G	L	V	M	Q	N	Y	R	L	I	D	A	T	L	Y	V	T	L	E	P	C	V	M	C	A	G	A	M	I	H	S	R	I	G	R	V	V	F	G	A	R	D	A	K	T	G	A	A	G	S	L	M	D	V
Secondary structure
SS confidence
Disorder											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Sequence		L	H	H	P	G	M	N	H	R	V	E	I	T	E	G	I	L	A	D	E	C	A	A	L	L	S	D	F	F	R	M	R	R	Q	E	I	K	A	Q	K	K	A	Q	S	S	T	D
Secondary structure
SS confidence
Disorder																																			?					?			?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1z3a chain A domain 1 Region: 2 - 157 Aligned: 156 Modelled: 156 Confidence: 100.0% Identity: 100% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Deoxycytidylate deaminase-like Phyre2 PDB 2nx8 chain A Region: 1 - 162 Aligned: 162 Modelled: 162 Confidence: 100.0% Identity: 37% PDB header:hydrolase Chain: A: PDB Molecule:trna-specific adenosine deaminase; PDBTitle: the crystal structure of the trna-specific adenosine deaminase from2 streptococcus pyogenes Phyre2 PDB 2b3j chain A domain 1 Region: 7 - 155 Aligned: 149 Modelled: 149 Confidence: 100.0% Identity: 44% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Deoxycytidylate deaminase-like Phyre2 PDB 3ocq chain A Region: 6 - 150 Aligned: 145 Modelled: 145 Confidence: 100.0% Identity: 92% PDB header:hydrolase Chain: A: PDB Molecule:putative cytosine/adenosine deaminase; PDBTitle: crystal structure of trna-specific adenosine deaminase from salmonella2 enterica Phyre2 PDB 1wwr chain A domain 1 Region: 6 - 156 Aligned: 150 Modelled: 151 Confidence: 100.0% Identity: 41% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Deoxycytidylate deaminase-like Phyre2 PDB 2o7p chain A Region: 4 - 167 Aligned: 150 Modelled: 161 Confidence: 100.0% Identity: 34% PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain Phyre2 PDB 2d5n chain B Region: 8 - 167 Aligned: 147 Modelled: 156 Confidence: 100.0% Identity: 38% PDB header:hydrolase, oxidoreductase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis Phyre2 PDB 2hxv chain A Region: 6 - 167 Aligned: 151 Modelled: 158 Confidence: 100.0% Identity: 34% PDB header:biosynthetic protein Chain: A: PDB Molecule:diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5- PDBTitle: crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine2 deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828)3 from thermotoga maritima at 1.80 a resolution Phyre2 PDB 2g84 chain A domain 1 Region: 1 - 151 Aligned: 147 Modelled: 151 Confidence: 100.0% Identity: 31% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Deoxycytidylate deaminase-like Phyre2 PDB 3dh1 chain D Region: 7 - 151 Aligned: 145 Modelled: 145 Confidence: 100.0% Identity: 34% PDB header:hydrolase Chain: D: PDB Molecule:trna-specific adenosine deaminase 2; PDBTitle: crystal structure of human trna-specific adenosine-34 deaminase2 subunit adat2 Phyre2 PDB 2a8n chain A domain 1 Region: 7 - 135 Aligned: 129 Modelled: 129 Confidence: 100.0% Identity: 42% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Deoxycytidylate deaminase-like Phyre2 PDB 1wkq chain A Region: 6 - 157 Aligned: 152 Modelled: 152 Confidence: 100.0% Identity: 29% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Deoxycytidylate deaminase-like Phyre2 PDB 1p6o chain A Region: 2 - 154 Aligned: 144 Modelled: 153 Confidence: 100.0% Identity: 29% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Deoxycytidylate deaminase-like Phyre2 PDB 2hxv chain A domain 2 Region: 8 - 156 Aligned: 144 Modelled: 149 Confidence: 100.0% Identity: 26% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Deoxycytidylate deaminase-like Phyre2 PDB 2b3z chain A domain 2 Region: 8 - 154 Aligned: 134 Modelled: 143 Confidence: 100.0% Identity: 40% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Deoxycytidylate deaminase-like Phyre2 PDB 1vq2 chain A Region: 6 - 133 Aligned: 119 Modelled: 128 Confidence: 100.0% Identity: 27% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Deoxycytidylate deaminase-like Phyre2 PDB 2hvw chain C Region: 8 - 133 Aligned: 116 Modelled: 126 Confidence: 100.0% Identity: 29% PDB header:hydrolase Chain: C: PDB Molecule:deoxycytidylate deaminase; PDBTitle: crystal structure of dcmp deaminase from streptococcus2 mutans Phyre2 PDB 2w4l chain C Region: 8 - 149 Aligned: 127 Modelled: 142 Confidence: 100.0% Identity: 28% PDB header:hydrolase Chain: C: PDB Molecule:deoxycytidylate deaminase; PDBTitle: human dcmp deaminase Phyre2 PDB 1uwz chain A Region: 6 - 121 Aligned: 115 Modelled: 116 Confidence: 98.3% Identity: 16% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Cytidine deaminase Phyre2 PDB 2d30 chain A domain 1 Region: 6 - 121 Aligned: 115 Modelled: 116 Confidence: 98.3% Identity: 17% Fold: Cytidine deaminase-like Superfamily: Cytidine deaminase-like Family: Cytidine deaminase Phyre2 1 d1z3aa1 2 c2nx8A_ 3 d2b3ja1 4 c3ocqA_ 5 d1wwra1 6 c2o7pA_ 7 c2d5nB_ 8 c2hxvA_ 9 d2g84a1 10 c3dh1D_ 11 d2a8na1 12 d1wkqa_ 13 d1p6oa_ 14 d2hxva2 15 d2b3za2 16 d1vq2a_ 17 c2hvwC_ 18 c2w4lC_ 19 d1uwza_ 20 d2d30a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1z3aa1 100.0 100 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 2 c2nx8A_ 100.0 37 PDB header:hydrolase Chain: A: PDB Molecule:trna-specific adenosine deaminase; PDBTitle: the crystal structure of the trna-specific adenosine deaminase from2 streptococcus pyogenes 3 d2b3ja1 100.0 44 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 4 c3ocqA_ 100.0 92 PDB header:hydrolase Chain: A: PDB Molecule:putative cytosine/adenosine deaminase; PDBTitle: crystal structure of trna-specific adenosine deaminase from salmonella2 enterica 5 d1wwra1 100.0 41 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 6 c2o7pA_ 100.0 34 PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain 7 c2d5nB_ 100.0 38 PDB header:hydrolase, oxidoreductase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis 8 c2hxvA_ 100.0 34 PDB header:biosynthetic protein Chain: A: PDB Molecule:diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5- PDBTitle: crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine2 deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828)3 from thermotoga maritima at 1.80 a resolution 9 d2g84a1 100.0 31 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 10 c3dh1D_ 100.0 34 PDB header:hydrolase Chain: D: PDB Molecule:trna-specific adenosine deaminase 2; PDBTitle: crystal structure of human trna-specific adenosine-34 deaminase2 subunit adat2 11 d2a8na1 100.0 42 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 12 d1wkqa_ 100.0 29 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 13 d1p6oa_ 100.0 29 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 14 d2hxva2 100.0 26 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 15 d2b3za2 100.0 40 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 16 d1vq2a_ 100.0 27 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like 17 c2hvwC_ 100.0 29 PDB header:hydrolase Chain: C: PDB Molecule:deoxycytidylate deaminase; PDBTitle: crystal structure of dcmp deaminase from streptococcus2 mutans 18 c2w4lC_ 100.0 28 PDB header:hydrolase Chain: C: PDB Molecule:deoxycytidylate deaminase; PDBTitle: human dcmp deaminase 19 d1uwza_ 98.3 16 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 20 d2d30a1 98.3 17 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 21 d1r5ta_ not modelled 98.2 18 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 22 d1mq0a_ not modelled 98.2 17 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 23 d2fr5a1 not modelled 98.2 18 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 24 c3dmoD_ not modelled 98.2 22 PDB header:hydrolase Chain: D: PDB Molecule:cytidine deaminase; PDBTitle: 1.6 a crystal structure of cytidine deaminase from2 burkholderia pseudomallei 25 c3ijfX_ not modelled 98.1 17 PDB header:hydrolase Chain: X: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase from mycobacterium2 tuberculosis 26 c3r2nC_ not modelled 98.0 15 PDB header:hydrolase Chain: C: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase from mycobacterium leprae 27 c3b8fB_ not modelled 98.0 12 PDB header:hydrolase Chain: B: PDB Molecule:putative blasticidin s deaminase; PDBTitle: crystal structure of the cytidine deaminase from bacillus anthracis 28 d1alna1 not modelled 97.8 23 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 29 d2z3ga1 not modelled 97.8 13 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 30 c3oj6C_ not modelled 97.7 10 PDB header:hydrolase Chain: C: PDB Molecule:blasticidin-s deaminase; PDBTitle: crystal structure of blasticidin s deaminase from coccidioides immitis 31 d1alna2 not modelled 97.6 15 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 32 c1alnA_ not modelled 97.5 22 PDB header:hydrolase Chain: A: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase complexed with 3-deazacytidine 33 c3g8qA_ not modelled 97.0 25 PDB header:rna binding protein Chain: A: PDB Molecule:predicted rna-binding protein, contains thump PDBTitle: a cytidine deaminase edits c-to-u in transfer rnas in2 archaea 34 c2nytB_ not modelled 93.6 28 PDB header:hydrolase Chain: B: PDB Molecule:probable c->u-editing enzyme apobec-2; PDBTitle: the apobec2 crystal structure and functional implications2 for aid 35 c2kboA_ not modelled 92.0 25 PDB header:hydrolase Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3g; PDBTitle: structure, interaction, and real-time monitoring of the2 enzymatic reaction of wild type apobec3g 36 c3gxgA_ not modelled 51.0 9 PDB header:hydrolase Chain: A: PDB Molecule:putative phosphatase (duf442); PDBTitle: crystal structure of putative phosphatase (duf442) (yp_001181608.1)2 from shewanella putrefaciens cn-32 at 1.60 a resolution 37 d1zbfa1 not modelled 49.7 21 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H 38 c3e9jC_ not modelled 42.9 71 PDB header:oxidoreductase Chain: C: PDB Molecule:thiol/disulfide oxidoreductase dsbb; PDBTitle: structure of the charge-transfer intermediate of the2 transmembrane redox catalyst dsbb 39 d2hi7b1 not modelled 42.9 71 Fold:Bromodomain-like Superfamily:DsbB-like Family:DsbB-like 40 d2b0va1 not modelled 30.6 14 Fold:Nudix Superfamily:Nudix Family:MutT-like 41 c3dkuB_ not modelled 27.7 11 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 42 c3ggmB_ not modelled 24.8 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein bt9727_2919; PDBTitle: crystal structure of bt9727_2919 from bacillus2 thuringiensis subsp. northeast structural genomics target3 bur228b 43 c2lk2A_ not modelled 20.9 17 PDB header:transcription Chain: A: PDB Molecule:homeobox protein tgif1; PDBTitle: solution nmr structure of homeobox domain (171-248) of human homeobox2 protein tgif1, northeast structural genomics consortium target3 hr4411b 44 c3rh7A_ not modelled 15.7 32 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution 45 c3o8sA_ not modelled 15.3 9 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution 46 c3nznA_ not modelled 14.6 20 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1 47 c3q4iA_ not modelled 13.7 18 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 48 c3d2oB_ not modelled 13.5 18 PDB header:hydrolase, biosynthetic protein Chain: B: PDB Molecule:upf0343 protein ngo0387; PDBTitle: crystal structure of manganese-metallated gtp cyclohydrolase2 type ib 49 d1j9ba_ not modelled 13.2 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like 50 c2imrA_ not modelled 13.0 36 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dr_0824; PDBTitle: crystal structure of amidohydrolase dr_0824 from2 deinococcus radiodurans 51 d1ttza_ not modelled 12.3 40 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 52 d2fb5a1 not modelled 11.7 29 Fold:YojJ-like Superfamily:YojJ-like Family:YojJ-like 53 c3ld0Q_ not modelled 11.6 63 PDB header:gene regulation Chain: Q: PDB Molecule:inhibitor of trap, regulated by t-box (trp) sequence rtpa; PDBTitle: crystal structure of b.licheniformis anti-trap protein, an antagonist2 of trap-rna interactions 54 d1hr6a1 not modelled 11.4 13 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:MPP-like 55 c3ipzA_ not modelled 10.7 15 PDB header:electron transport, oxidoreductase Chain: A: PDB Molecule:monothiol glutaredoxin-s14, chloroplastic; PDBTitle: crystal structure of arabidopsis monothiol glutaredoxin atgrxcp 56 d1xdpa4 not modelled 10.6 16 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 57 d2o8ra4 not modelled 10.4 16 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 58 c4a1oB_ not modelled 9.7 21 PDB header:transferase-hydrolase Chain: B: PDB Molecule:bifunctional purine biosynthesis protein purh; PDBTitle: crystal structure of mycobacterium tuberculosis purh complexed with2 aicar and a novel nucleotide cfair, at 2.48 a resolution. 59 c2oodA_ not modelled 9.7 21 PDB header:hydrolase Chain: A: PDB Molecule:blr3880 protein; PDBTitle: crystal structure of guanine deaminase from bradyrhizobium japonicum 60 c2klxA_ not modelled 9.6 23 PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from bartonella henselae str.2 houston 61 c2r5rA_ not modelled 9.3 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0343 protein ne1163; PDBTitle: the crystal structure of duf198 from nitrosomonas europaea2 atcc 19718 62 d1zcza2 not modelled 9.0 16 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC 63 c2dmnA_ not modelled 8.4 17 PDB header:transcription Chain: A: PDB Molecule:homeobox protein tgif2lx; PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein tgif2lx 64 d1nuia2 not modelled 8.4 27 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 65 c2pq1B_ not modelled 8.0 29 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 66 c2kq2A_ not modelled 7.6 15 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease h-related protein; PDBTitle: solution nmr structure of the apo form of a ribonuclease h2 domain of protein dsy1790 from desulfitobacterium3 hafniense, northeast structural genomics target dhr1a 67 d2drpa2 not modelled 7.2 60 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 68 c2khpA_ not modelled 7.0 32 PDB header:electron transport Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from brucella melitensis 69 c3hstD_ not modelled 6.9 15 PDB header:hydrolase Chain: D: PDB Molecule:protein rv2228c/mt2287; PDBTitle: n-terminal rnase h domain of rv2228c from mycobacterium tuberculosis2 as a fusion protein with maltose binding protein 70 d1i1qb_ not modelled 6.8 29 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 71 d2akla2 not modelled 6.4 56 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:PhnA zinc-binding domain 72 c2bx9J_ not modelled 5.7 57 PDB header:transcription regulation Chain: J: PDB Molecule:tryptophan rna-binding attenuator protein-inhibitory PDBTitle: crystal structure of b.subtilis anti-trap protein, an2 antagonist of trap-rna interactions 73 c2xzn5_ not modelled 5.7 70 PDB header:ribosome Chain: 5: PDB Molecule:ribosomal protein s26e containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 74 d1vdda_ not modelled 5.5 21 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR 75 d2r5yb1 not modelled 5.4 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 76 d2baia1 not modelled 5.3 44 Fold:Viral leader polypeptide zinc finger Superfamily:Viral leader polypeptide zinc finger Family:Viral leader polypeptide zinc finger 77 d1k61a_ not modelled 5.3 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 78 d1du6a_ not modelled 5.2 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 79 c2o8rA_ not modelled 5.1 16 PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0