PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3g8qA_

Fold library id	PDB Header	Molecule	Title
c3g8qA_	PDB header: rna binding protein	Chain: A: PDB Molecule: predicted rna-binding protein, contains thump	PDBTitle: a cytidine deaminase edits c-to-u in transfer rnas in2 archaea

Links to external resources
Added to library: Sun Aug 29 04:17:41 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K V S L A G Q T V D V K K I L N E I P K R T V T A A L L E G G E I V A V E E A D D E H A E R K L V R R H D V E G K V V F V T A R P C L Y C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S
T T
S S S
S
T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A R E L A E A G V A G V V Y L G R G R G L G P Y Y L A R S G V E V V E V H P D E P L G Y D P V D R L D V L L T F G G N P Y L T E E D V A A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S
T T T
S
S S
S
S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V Y C L L T G R G F D A D I A P A P E N L S G R V E I M V T R G D P D E A V E L L K E E L P V F R I R R F L I S G E F D R D E L R E R I L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S G G G
T T S
S T T S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . .

Sequence D I E P R I L D P F A V R A R I A R A G A F S S S R E A E V F I G D V L T S V G R E V N L N D P R T V V T V D V L G P R V S V G V E K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T G G G
S S
S S
S S T T T
B
S S S
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	V	S	L	A	G	Q	T	V	D	V	K	K	I	L	N	E	I	P	K	R	T	V	T	A	A	L	L	E	G	G	E	I	V	A	V	E	E	A	D	D	E	H	A	E	R	K	L	V	R	R	H	D	V	E	G	K	V	V	F	V	T	A	R	P	C	L	Y	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T												S			S	S								T	T									S	S	S										S			T	T						S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	R	E	L	A	E	A	G	V	A	G	V	V	Y	L	G	R	G	R	G	L	G	P	Y	Y	L	A	R	S	G	V	E	V	V	E	V	H	P	D	E	P	L	G	Y	D	P	V	D	R	L	D	V	L	L	T	F	G	G	N	P	Y	L	T	E	E	D	V	A	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T										S	S									T	T	T										S								S	S		S							S		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	Y	C	L	L	T	G	R	G	F	D	A	D	I	A	P	A	P	E	N	L	S	G	R	V	E	I	M	V	T	R	G	D	P	D	E	A	V	E	L	L	K	E	E	L	P	V	F	R	I	R	R	F	L	I	S	G	E	F	D	R	D	E	L	R	E	R	I	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T								S	G	G	G		T	T									S													S	T	T	S						S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Sequence	D	I	E	P	R	I	L	D	P	F	A	V	R	A	R	I	A	R	A	G	A	F	S	S	S	R	E	A	E	V	F	I	G	D	V	L	T	S	V	G	R	E	V	N	L	N	D	P	R	T	V	V	T	V	D	V	L	G	P	R	V	S	V	G	V	E	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	G	G	G			S	S											S	S		S	S														T	T	T			B		S	S	S		S									T	T