Phyre 2 alignment of P68398 with c2hb5A_

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Job Description | P68398
Confidence | 5.02% | Date | Thu Jan 5 12:11:02 GMT 2012
Rank | 80 | Aligned Residues | 51
% Identity | 20% | Template | c2hb5A_
PDB info | PDB header:hydrolase | Chain: A: PDB Molecule:reverse transcriptase/ribonuclease h; | PDBTitle: crystal structure of the moloney murine leukemia virus2 rnase h domain
Resolution | 1.59 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 26 | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | E | V | P | V | G | A | V | L | V | H | N | N | R | V | I | G | E | G | W | N | R | P | I | G | R | H | D | P | T | A | H | A | E | I | M | A | L | R | Q | G | G | L | V | M | Q | N | Y | R | L | I | D | A | T | L | Y | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |
Template Sequence |  | G | Q | R | K | A | G | A | A | V | T | T | E | T | E | V | I | W | A | K | A | L | P | A | G | T | S | A | Q | . | . | . | R | A | E | L | I | A | L | T | Q | A | L | K | X | A | E | G | . | . | . | K | K | L | N | V | Y | T
Template Known Secondary structure |  | T |  |  |  |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | T | B | T | . | . | . | S |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 36 | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . |  |  |  | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |  |  |  | 80 | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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