Phyre 2 Results for P68398

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Email | l.a.kelley@imperial.ac.uk
Description | P68398
Date | Thu Jan 5 12:11:02 GMT 2012
Unique Job ID | b0836fb5cf88052e

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1z3aa1
Top template information
Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like
Confidence and coverage
Confidence: | 100.0% | Coverage: | 93%
156 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | E | V | E | F | S | H | E | Y | W | M | R | H | A | L | T | L | A | K | R | A | W | D | E | R | E | V | P | V | G | A | V | L | V | H | N | N | R | V | I | G | E | G | W | N | R | P | I | G | R | H | D | P | T | A | H | A | E | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | M | A | L | R | Q | G | G | L | V | M | Q | N | Y | R | L | I | D | A | T | L | Y | V | T | L | E | P | C | V | M | C | A | G | A | M | I | H | S | R | I | G | R | V | V | F | G | A | R | D | A | K | T | G | A | A | G | S | L | M | D | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | .
Sequence |  | L | H | H | P | G | M | N | H | R | V | E | I | T | E | G | I | L | A | D | E | C | A | A | L | L | S | D | F | F | R | M | R | R | Q | E | I | K | A | Q | K | K | A | Q | S | S | T | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  | ? |  |  | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1z3aa1 |

### PDB 1z3a chain A domain 1

Region: 2 - 157
Aligned: 156
Modelled: 156
Confidence: 100.0%
Identity: 100%
Fold: Cytidine deaminase-like
Superfamily: Cytidine deaminase-like
Family: Deoxycytidylate deaminase-like

Phyre2
2 |
| c2nx8A_ |

### PDB 2nx8 chain A

Region: 1 - 162
Aligned: 162
Modelled: 162
Confidence: 100.0%
Identity: 37%
PDB header:hydrolase
Chain: A: PDB Molecule:trna-specific adenosine deaminase;
PDBTitle: the crystal structure of the trna-specific adenosine deaminase from2 streptococcus pyogenes

Phyre2
3 |
| d2b3ja1 |

### PDB 2b3j chain A domain 1

Region: 7 - 155
Aligned: 149
Modelled: 149
Confidence: 100.0%
Identity: 44%
Fold: Cytidine deaminase-like
Superfamily: Cytidine deaminase-like
Family: Deoxycytidylate deaminase-like

Phyre2
4 |
| c3ocqA_ |

### PDB 3ocq chain A

Region: 6 - 150
Aligned: 145
Modelled: 145
Confidence: 100.0%
Identity: 92%
PDB header:hydrolase
Chain: A: PDB Molecule:putative cytosine/adenosine deaminase;
PDBTitle: crystal structure of trna-specific adenosine deaminase from salmonella2 enterica

Phyre2
5 |
| d1wwra1 |

### PDB 1wwr chain A domain 1

Region: 6 - 156
Aligned: 150
Modelled: 151
Confidence: 100.0%
Identity: 41%
Fold: Cytidine deaminase-like
Superfamily: Cytidine deaminase-like
Family: Deoxycytidylate deaminase-like

Phyre2
6 |
| c2o7pA_ |

### PDB 2o7p chain A

Region: 4 - 167
Aligned: 150
Modelled: 161
Confidence: 100.0%
Identity: 34%
PDB header:hydrolase, oxidoreductase
Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain

Phyre2
7 |
| c2d5nB_ |

### PDB 2d5n chain B

Region: 8 - 167
Aligned: 147
Modelled: 156
Confidence: 100.0%
Identity: 38%
PDB header:hydrolase, oxidoreductase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis

Phyre2
8 |
| c2hxvA_ |

### PDB 2hxv chain A

Region: 6 - 167
Aligned: 151
Modelled: 158
Confidence: 100.0%
Identity: 34%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-
PDBTitle: crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine2 deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828)3 from thermotoga maritima at 1.80 a resolution

Phyre2
9 |
| d2g84a1 |

### PDB 2g84 chain A domain 1

Region: 1 - 151
Aligned: 147
Modelled: 151
Confidence: 100.0%
Identity: 31%
Fold: Cytidine deaminase-like
Superfamily: Cytidine deaminase-like
Family: Deoxycytidylate deaminase-like

Phyre2
10 |
| c3dh1D_ |

### PDB 3dh1 chain D

Region: 7 - 151
Aligned: 145
Modelled: 145
Confidence: 100.0%
Identity: 34%
PDB header:hydrolase
Chain: D: PDB Molecule:trna-specific adenosine deaminase 2;
PDBTitle: crystal structure of human trna-specific adenosine-34 deaminase2 subunit adat2

Phyre2
11 |
| d2a8na1 |

### PDB 2a8n chain A domain 1

Region: 7 - 135
Aligned: 129
Modelled: 129
Confidence: 100.0%
Identity: 42%
Fold: Cytidine deaminase-like
Superfamily: Cytidine deaminase-like
Family: Deoxycytidylate deaminase-like

Phyre2
12 |
| d1wkqa_ |

### PDB 1wkq chain A

Region: 6 - 157
Aligned: 152
Modelled: 152
Confidence: 100.0%
Identity: 29%
Fold: Cytidine deaminase-like
Superfamily: Cytidine deaminase-like
Family: Deoxycytidylate deaminase-like

Phyre2
13 |
| d1p6oa_ |

### PDB 1p6o chain A

Region: 2 - 154
Aligned: 144
Modelled: 153
Confidence: 100.0%
Identity: 29%
Fold: Cytidine deaminase-like
Superfamily: Cytidine deaminase-like
Family: Deoxycytidylate deaminase-like

Phyre2
14 |
| d2hxva2 |

### PDB 2hxv chain A domain 2

Region: 8 - 156
Aligned: 144
Modelled: 149
Confidence: 100.0%
Identity: 26%
Fold: Cytidine deaminase-like
Superfamily: Cytidine deaminase-like
Family: Deoxycytidylate deaminase-like

Phyre2
15 |
| d2b3za2 |

### PDB 2b3z chain A domain 2

Region: 8 - 154
Aligned: 134
Modelled: 143
Confidence: 100.0%
Identity: 40%
Fold: Cytidine deaminase-like
Superfamily: Cytidine deaminase-like
Family: Deoxycytidylate deaminase-like

Phyre2
16 |
| d1vq2a_ |

### PDB 1vq2 chain A

Region: 6 - 133
Aligned: 119
Modelled: 128
Confidence: 100.0%
Identity: 27%
Fold: Cytidine deaminase-like
Superfamily: Cytidine deaminase-like
Family: Deoxycytidylate deaminase-like

Phyre2
17 |
| c2hvwC_ |

### PDB 2hvw chain C

Region: 8 - 133
Aligned: 116
Modelled: 126
Confidence: 100.0%
Identity: 29%
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: crystal structure of dcmp deaminase from streptococcus2 mutans

Phyre2
18 |
| c2w4lC_ |

### PDB 2w4l chain C

Region: 8 - 149
Aligned: 127
Modelled: 142
Confidence: 100.0%
Identity: 28%
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: human dcmp deaminase

Phyre2
19 |
| d1uwza_ |

### PDB 1uwz chain A

Region: 6 - 121
Aligned: 115
Modelled: 116
Confidence: 98.3%
Identity: 16%
Fold: Cytidine deaminase-like
Superfamily: Cytidine deaminase-like
Family: Cytidine deaminase

Phyre2
20 |
| d2d30a1 |

### PDB 2d30 chain A domain 1

Region: 6 - 121
Aligned: 115
Modelled: 116
Confidence: 98.3%
Identity: 17%
Fold: Cytidine deaminase-like
Superfamily: Cytidine deaminase-like
Family: Cytidine deaminase

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1z3aa1 |
|  | 100.0 | 100 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like
2 | c2nx8A_ |
|  | 100.0 | 37 | PDB header:hydrolase Chain: A: PDB Molecule:trna-specific adenosine deaminase; PDBTitle: the crystal structure of the trna-specific adenosine deaminase from2 streptococcus pyogenes
3 | d2b3ja1 |
|  | 100.0 | 44 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like
4 | c3ocqA_ |
|  | 100.0 | 92 | PDB header:hydrolase Chain: A: PDB Molecule:putative cytosine/adenosine deaminase; PDBTitle: crystal structure of trna-specific adenosine deaminase from salmonella2 enterica
5 | d1wwra1 |
|  | 100.0 | 41 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like
6 | c2o7pA_ |
|  | 100.0 | 34 | PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain
7 | c2d5nB_ |
|  | 100.0 | 38 | PDB header:hydrolase, oxidoreductase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd; PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis
8 | c2hxvA_ |
|  | 100.0 | 34 | PDB header:biosynthetic protein Chain: A: PDB Molecule:diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5- PDBTitle: crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine2 deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828)3 from thermotoga maritima at 1.80 a resolution
9 | d2g84a1 |
|  | 100.0 | 31 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like
10 | c3dh1D_ |
|  | 100.0 | 34 | PDB header:hydrolase Chain: D: PDB Molecule:trna-specific adenosine deaminase 2; PDBTitle: crystal structure of human trna-specific adenosine-34 deaminase2 subunit adat2
11 | d2a8na1 |
|  | 100.0 | 42 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like
12 | d1wkqa_ |
|  | 100.0 | 29 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like
13 | d1p6oa_ |
|  | 100.0 | 29 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like
14 | d2hxva2 |
|  | 100.0 | 26 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like
15 | d2b3za2 |
|  | 100.0 | 40 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like
16 | d1vq2a_ |
|  | 100.0 | 27 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Deoxycytidylate deaminase-like
17 | c2hvwC_ |
|  | 100.0 | 29 | PDB header:hydrolase Chain: C: PDB Molecule:deoxycytidylate deaminase; PDBTitle: crystal structure of dcmp deaminase from streptococcus2 mutans
18 | c2w4lC_ |
|  | 100.0 | 28 | PDB header:hydrolase Chain: C: PDB Molecule:deoxycytidylate deaminase; PDBTitle: human dcmp deaminase
19 | d1uwza_ |
|  | 98.3 | 16 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase
20 | d2d30a1 |
|  | 98.3 | 17 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase
21 | d1r5ta_ |
| not modelled | 98.2 | 18 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase
22 | d1mq0a_ |
| not modelled | 98.2 | 17 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase
23 | d2fr5a1 |
| not modelled | 98.2 | 18 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase
24 | c3dmoD_ |
| not modelled | 98.2 | 22 | PDB header:hydrolase Chain: D: PDB Molecule:cytidine deaminase; PDBTitle: 1.6 a crystal structure of cytidine deaminase from2 burkholderia pseudomallei
25 | c3ijfX_ |
| not modelled | 98.1 | 17 | PDB header:hydrolase Chain: X: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase from mycobacterium2 tuberculosis
26 | c3r2nC_ |
| not modelled | 98.0 | 15 | PDB header:hydrolase Chain: C: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase from mycobacterium leprae
27 | c3b8fB_ |
| not modelled | 98.0 | 12 | PDB header:hydrolase Chain: B: PDB Molecule:putative blasticidin s deaminase; PDBTitle: crystal structure of the cytidine deaminase from bacillus anthracis
28 | d1alna1 |
| not modelled | 97.8 | 23 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase
29 | d2z3ga1 |
| not modelled | 97.8 | 13 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase
30 | c3oj6C_ |
| not modelled | 97.7 | 10 | PDB header:hydrolase Chain: C: PDB Molecule:blasticidin-s deaminase; PDBTitle: crystal structure of blasticidin s deaminase from coccidioides immitis
31 | d1alna2 |
| not modelled | 97.6 | 15 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase
32 | c1alnA_ |
| not modelled | 97.5 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase complexed with 3-deazacytidine
33 | c3g8qA_ |
| not modelled | 97.0 | 25 | PDB header:rna binding protein Chain: A: PDB Molecule:predicted rna-binding protein, contains thump PDBTitle: a cytidine deaminase edits c-to-u in transfer rnas in2 archaea
34 | c2nytB_ |
| not modelled | 93.6 | 28 | PDB header:hydrolase Chain: B: PDB Molecule:probable c->u-editing enzyme apobec-2; PDBTitle: the apobec2 crystal structure and functional implications2 for aid
35 | c2kboA_ |
| not modelled | 92.0 | 25 | PDB header:hydrolase Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3g; PDBTitle: structure, interaction, and real-time monitoring of the2 enzymatic reaction of wild type apobec3g
36 | c3gxgA_ |
| not modelled | 51.0 | 9 | PDB header:hydrolase Chain: A: PDB Molecule:putative phosphatase (duf442); PDBTitle: crystal structure of putative phosphatase (duf442) (yp_001181608.1)2 from shewanella putrefaciens cn-32 at 1.60 a resolution
37 | d1zbfa1 |
| not modelled | 49.7 | 21 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Ribonuclease H
38 | c3e9jC_ |
| not modelled | 42.9 | 71 | PDB header:oxidoreductase Chain: C: PDB Molecule:thiol/disulfide oxidoreductase dsbb; PDBTitle: structure of the charge-transfer intermediate of the2 transmembrane redox catalyst dsbb
39 | d2hi7b1 |
| not modelled | 42.9 | 71 | Fold:Bromodomain-like Superfamily:DsbB-like Family:DsbB-like
40 | d2b0va1 |
| not modelled | 30.6 | 14 | Fold:Nudix Superfamily:Nudix Family:MutT-like
41 | c3dkuB_ |
| not modelled | 27.7 | 11 | PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1
42 | c3ggmB_ |
| not modelled | 24.8 | 13 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein bt9727_2919; PDBTitle: crystal structure of bt9727_2919 from bacillus2 thuringiensis subsp. northeast structural genomics target3 bur228b
43 | c2lk2A_ |
| not modelled | 20.9 | 17 | PDB header:transcription Chain: A: PDB Molecule:homeobox protein tgif1; PDBTitle: solution nmr structure of homeobox domain (171-248) of human homeobox2 protein tgif1, northeast structural genomics consortium target3 hr4411b
44 | c3rh7A_ |
| not modelled | 15.7 | 32 | PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution
45 | c3o8sA_ |
| not modelled | 15.3 | 9 | PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution
46 | c3nznA_ |
| not modelled | 14.6 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: the crystal structure of the glutaredoxin from methanosarcina mazei2 go1
47 | c3q4iA_ |
| not modelled | 13.7 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+
48 | c3d2oB_ |
| not modelled | 13.5 | 18 | PDB header:hydrolase, biosynthetic protein Chain: B: PDB Molecule:upf0343 protein ngo0387; PDBTitle: crystal structure of manganese-metallated gtp cyclohydrolase2 type ib
49 | d1j9ba_ |
| not modelled | 13.2 | 17 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:ArsC-like
50 | c2imrA_ |
| not modelled | 13.0 | 36 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dr_0824; PDBTitle: crystal structure of amidohydrolase dr_0824 from2 deinococcus radiodurans
51 | d1ttza_ |
| not modelled | 12.3 | 40 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase
52 | d2fb5a1 |
| not modelled | 11.7 | 29 | Fold:YojJ-like Superfamily:YojJ-like Family:YojJ-like
53 | c3ld0Q_ |
| not modelled | 11.6 | 63 | PDB header:gene regulation Chain: Q: PDB Molecule:inhibitor of trap, regulated by t-box (trp) sequence rtpa; PDBTitle: crystal structure of b.licheniformis anti-trap protein, an antagonist2 of trap-rna interactions
54 | d1hr6a1 |
| not modelled | 11.4 | 13 | Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:MPP-like
55 | c3ipzA_ |
| not modelled | 10.7 | 15 | PDB header:electron transport, oxidoreductase Chain: A: PDB Molecule:monothiol glutaredoxin-s14, chloroplastic; PDBTitle: crystal structure of arabidopsis monothiol glutaredoxin atgrxcp
56 | d1xdpa4 |
| not modelled | 10.6 | 16 | Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain
57 | d2o8ra4 |
| not modelled | 10.4 | 16 | Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain
58 | c4a1oB_ |
| not modelled | 9.7 | 21 | PDB header:transferase-hydrolase Chain: B: PDB Molecule:bifunctional purine biosynthesis protein purh; PDBTitle: crystal structure of mycobacterium tuberculosis purh complexed with2 aicar and a novel nucleotide cfair, at 2.48 a resolution.
59 | c2oodA_ |
| not modelled | 9.7 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:blr3880 protein; PDBTitle: crystal structure of guanine deaminase from bradyrhizobium japonicum
60 | c2klxA_ |
| not modelled | 9.6 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from bartonella henselae str.2 houston
61 | c2r5rA_ |
| not modelled | 9.3 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0343 protein ne1163; PDBTitle: the crystal structure of duf198 from nitrosomonas europaea2 atcc 19718
62 | d1zcza2 |
| not modelled | 9.0 | 16 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
63 | c2dmnA_ |
| not modelled | 8.4 | 17 | PDB header:transcription Chain: A: PDB Molecule:homeobox protein tgif2lx; PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein tgif2lx
64 | d1nuia2 |
| not modelled | 8.4 | 27 | Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger
65 | c2pq1B_ |
| not modelled | 8.0 | 29 | PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5
66 | c2kq2A_ |
| not modelled | 7.6 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease h-related protein; PDBTitle: solution nmr structure of the apo form of a ribonuclease h2 domain of protein dsy1790 from desulfitobacterium3 hafniense, northeast structural genomics target dhr1a
67 | d2drpa2 |
| not modelled | 7.2 | 60 | Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2
68 | c2khpA_ |
| not modelled | 7.0 | 32 | PDB header:electron transport Chain: A: PDB Molecule:glutaredoxin; PDBTitle: solution structure of glutaredoxin from brucella melitensis
69 | c3hstD_ |
| not modelled | 6.9 | 15 | PDB header:hydrolase Chain: D: PDB Molecule:protein rv2228c/mt2287; PDBTitle: n-terminal rnase h domain of rv2228c from mycobacterium tuberculosis2 as a fusion protein with maltose binding protein
70 | d1i1qb_ |
| not modelled | 6.8 | 29 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
71 | d2akla2 |
| not modelled | 6.4 | 56 | Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:PhnA zinc-binding domain
72 | c2bx9J_ |
| not modelled | 5.7 | 57 | PDB header:transcription regulation Chain: J: PDB Molecule:tryptophan rna-binding attenuator protein-inhibitory PDBTitle: crystal structure of b.subtilis anti-trap protein, an2 antagonist of trap-rna interactions
73 | c2xzn5_ |
| not modelled | 5.7 | 70 | PDB header:ribosome Chain: 5: PDB Molecule:ribosomal protein s26e containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
74 | d1vdda_ |
| not modelled | 5.5 | 21 | Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR
75 | d2r5yb1 |
| not modelled | 5.4 | 11 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
76 | d2baia1 |
| not modelled | 5.3 | 44 | Fold:Viral leader polypeptide zinc finger Superfamily:Viral leader polypeptide zinc finger Family:Viral leader polypeptide zinc finger
77 | d1k61a_ |
| not modelled | 5.3 | 15 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
78 | d1du6a_ |
| not modelled | 5.2 | 9 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
79 | c2o8rA_ |
| not modelled | 5.1 | 16 | PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0