Email l.a.kelley@imperial.ac.uk Description P37057 Date Thu Jan 5 11:54:46 GMT 2012 Unique Job ID a8d3a0d2c1370a53

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1tfia_ 96.0 18 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 2 d1twfi2 95.7 24 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 3 d1qypa_ 95.6 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 4 c1pqvS_ 94.4 15 PDB header:transferase/transcription Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis complex 5 c1y1yS_ 93.7 15 PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex 6 c1i3qI_ 93.4 24 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution 7 c3h0gI_ 93.2 22 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 8 c2hu9B_ 92.0 16 PDB header:metal transport Chain: B: PDB Molecule:mercuric transport protein periplasmic component; PDBTitle: x-ray structure of the archaeoglobus fulgidus copz n-2 terminal domain 9 d1dgsa1 87.8 35 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:NAD+-dependent DNA ligase, domain 3 10 c4a17Y_ 79.6 30 PDB header:ribosome Chain: Y: PDB Molecule:rpl37a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 11 d1wiia_ 79.0 29 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Putative zinc binding domain 12 d2fiya1 77.6 39 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 13 c3cc4Z_ 75.8 33 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit 14 c1dgsB_ 75.0 35 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis 15 c1yshD_ 74.3 27 PDB header:structural protein/rna Chain: D: PDB Molecule:ribosomal protein l37a; PDBTitle: localization and dynamic behavior of ribosomal protein l30e 16 c2zkrz_ 74.0 27 PDB header:ribosomal protein/rna Chain: Z: PDB Molecule:e site t-rna; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 17 d1vqoz1 73.7 35 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 18 d2ctda2 72.5 50 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 19 c2qa4Z_ 72.3 35 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit 20 d1jj2y_ 71.2 27 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 21 d1ffkw_ not modelled 71.0 31 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 22 c3cngC_ not modelled 70.7 29 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 23 c3gn5B_ not modelled 64.3 25 PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) 24 c2kpiA_ not modelled 63.1 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sco3027; PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58 25 c2jr6A_ 61.0 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 26 c3ndjA_ not modelled 59.7 15 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product 27 c2f9iD_ not modelled 59.5 28 PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 28 c1v9pB_ not modelled 59.3 35 PDB header:ligase Chain: B: PDB Molecule:dna ligase; PDBTitle: crystal structure of nad+-dependent dna ligase 29 c2owoA_ not modelled 59.2 28 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 30 c1x31D_ not modelled 58.6 30 PDB header:oxidoreductase Chain: D: PDB Molecule:sarcosine oxidase delta subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 31 c2js4A_ not modelled 58.0 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 32 c1s1i9_ not modelled 57.9 27 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 33 c2qkdA_ not modelled 57.9 24 PDB header:signaling protein, cell cycle Chain: A: PDB Molecule:zinc finger protein zpr1; PDBTitle: crystal structure of tandem zpr1 domains 34 d2jnya1 not modelled 55.4 14 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 35 d1p91a_ not modelled 50.3 28 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:rRNA methyltransferase RlmA 36 c3jyw9_ not modelled 46.7 27 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 37 c2k5cA_ not modelled 45.8 36 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 38 c3a44D_ not modelled 44.2 38 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 39 d2fu5a1 not modelled 41.0 17 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 40 c2gajA_ not modelled 40.1 27 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase i; PDBTitle: structure of full length topoisomerase i from thermotoga maritima in2 monoclinic crystal form 41 d1hxra_ not modelled 39.9 17 Fold:Mss4-like Superfamily:Mss4-like Family:RabGEF Mss4 42 c2gb5B_ not modelled 38.8 19 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 43 d1dl6a_ not modelled 38.6 25 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 44 d2cona1 not modelled 38.5 22 Fold:Rubredoxin-like Superfamily:NOB1 zinc finger-like Family:NOB1 zinc finger-like 45 c2f9yB_ not modelled 37.3 20 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli 46 d2f9yb1 not modelled 37.3 20 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 47 c2kdxA_ not modelled 34.4 11 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 48 c1dvbA_ not modelled 32.7 24 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 49 c2adrA_ not modelled 31.1 25 PDB header:transcription regulation Chain: A: PDB Molecule:adr1; PDBTitle: adr1 dna-binding domain from saccharomyces cerevisiae, nmr,2 25 structures 50 d2pk7a1 not modelled 30.9 14 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 51 d2hf1a1 not modelled 29.5 31 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 52 c3k7aM_ not modelled 29.1 33 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 53 c1llmC_ not modelled 28.2 16 PDB header:transcription/dna Chain: C: PDB Molecule:chimera of zif23-gcn4; PDBTitle: crystal structure of a zif23-gcn4 chimera bound to dna 54 c2ghfA_ not modelled 28.1 14 PDB header:transcription, metal binding protein Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 1; PDBTitle: solution structure of the complete zinc-finger region of2 human zinc-fingers and homeoboxes 1 (zhx1) 55 c2cotA_ not modelled 27.6 13 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 435; PDBTitle: solution structure of the first and second zf-c2h2 domain2 of zinc finger protein 435 56 d1wj2a_ not modelled 26.6 21 Fold:WRKY DNA-binding domain Superfamily:WRKY DNA-binding domain Family:WRKY DNA-binding domain 57 c1wjvA_ not modelled 26.3 17 PDB header:dna binding protein Chain: A: PDB Molecule:cell growth regulating nucleolar protein lyar; PDBTitle: solution structure of the n-terminal zinc finger domain of2 mouse cell growth regulating nucleolar protein lyar 58 d1pfva3 not modelled 26.0 30 Fold:Rubredoxin-like Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain Family:Methionyl-tRNA synthetase (MetRS), Zn-domain 59 c2d9kA_ not modelled 25.9 21 PDB header:immune system Chain: A: PDB Molecule:fln29 gene product; PDBTitle: solution structure of the zf-traf domain of fln29 gene2 product 60 c1x5wA_ not modelled 25.2 13 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 64, isoforms 1; PDBTitle: solution structure of the c2h2 type zinc-binding domain of2 human zinc finger protein 64, isoforms 1 and 2 61 d2ct1a1 not modelled 25.0 71 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 62 d2dlqa2 not modelled 24.7 57 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 63 c2ct1A_ not modelled 24.6 14 PDB header:transcription Chain: A: PDB Molecule:transcriptional repressor ctcf; PDBTitle: solution structure of the zinc finger domain of2 transcriptional repressor ctcf protein 64 c2hr5B_ not modelled 24.3 25 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 65 d1pvma3 not modelled 23.3 21 Fold:Rubredoxin-like Superfamily:Hypothetical protein Ta0289 C-terminal domain Family:Hypothetical protein Ta0289 C-terminal domain 66 c2yreA_ not modelled 22.0 17 PDB header:protein binding Chain: A: PDB Molecule:f-box only protein 30; PDBTitle: solution structure of the zinc finger domains (1-87) from2 human f-box only protein 67 c1x6eA_ not modelled 21.7 13 PDB header:dna binding protein Chain: A: PDB Molecule:zinc finger protein 24; PDBTitle: solution structures of the c2h2 type zinc finger domain of2 human zinc finger protein 24 68 d1nuia2 not modelled 21.6 22 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 69 d1twfi1 not modelled 21.6 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 70 c2aydA_ not modelled 21.2 21 PDB header:transcription Chain: A: PDB Molecule:wrky transcription factor 1; PDBTitle: crystal structure of the c-terminal wrky domainof atwrky1,2 an sa-induced and partially npr1-dependent transcription3 factor 71 d1pfta_ not modelled 20.2 40 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 72 d2ey4e1 not modelled 19.9 16 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 73 c1yuzB_ not modelled 19.7 21 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 74 c3hctA_ not modelled 19.1 13 PDB header:signaling protein/ligase Chain: A: PDB Molecule:tnf receptor-associated factor 6; PDBTitle: crystal structure of traf6 in complex with ubc13 in the p12 space group 75 c2ja6L_ not modelled 18.4 30 PDB header:transferase Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii 7.7 PDBTitle: cpd lesion containing rna polymerase ii elongation complex2 b 76 c1wjpA_ not modelled 18.4 19 PDB header:metal binding protein Chain: A: PDB Molecule:zinc finger protein 295; PDBTitle: solution structure of zf-c2h2 domains from human zinc2 finger protein 295 77 d1aaya1 not modelled 17.9 25 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 78 c2wbtA_ not modelled 16.4 28 PDB header:dna-binding protein Chain: A: PDB Molecule:b-129; PDBTitle: the structure of a double c2h2 zinc finger protein from a2 hyperthermophilic archaeal virus in the absence of dna 79 d2apob1 not modelled 15.5 16 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 80 d6rxna_ not modelled 15.2 33 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 81 d1a1ia1 not modelled 15.1 25 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 82 d2qam01 not modelled 15.0 0 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 83 c3htkC_ not modelled 15.0 22 PDB header:recombination/replication/ligase Chain: C: PDB Molecule:e3 sumo-protein ligase mms21; PDBTitle: crystal structure of mms21 and smc5 complex 84 c2yu4A_ not modelled 14.9 33 PDB header:apoptosis Chain: A: PDB Molecule:e3 sumo-protein ligase nse2; PDBTitle: solution structure of the sp-ring domain in non-smc element2 2 homolog (mms21, s. cerevisiae) 85 d1a1ha1 not modelled 14.8 25 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 86 c1nltA_ not modelled 14.3 15 PDB header:protein transport Chain: A: PDB Molecule:mitochondrial protein import protein mas5; PDBTitle: the crystal structure of hsp40 ydj1 87 c3lpeF_ not modelled 14.3 25 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 88 c2d9hA_ not modelled 14.1 17 PDB header:dna binding protein Chain: A: PDB Molecule:zinc finger protein 692; PDBTitle: solution structure of the forth and fifth zf-c2h2 domains2 of zinc finger protein 692 89 d1f2ig1 not modelled 14.0 27 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 90 d1lv3a_ not modelled 13.9 30 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Hypothetical zinc finger protein YacG 91 c3h0gL_ not modelled 13.3 33 PDB header:transcription Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 92 c3iz5p_ not modelled 13.3 23 PDB header:ribosome Chain: P: PDB Molecule:60s ribosomal protein l15 (l15e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 93 d2j0151 not modelled 12.9 33 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 94 d1nnqa2 not modelled 12.6 21 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 95 d2zjrz1 not modelled 12.5 30 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L32p 96 d1a1ga1 not modelled 12.4 25 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 97 c2bx9J_ not modelled 12.2 27 PDB header:transcription regulation Chain: J: PDB Molecule:tryptophan rna-binding attenuator protein-inhibitory PDBTitle: crystal structure of b.subtilis anti-trap protein, an2 antagonist of trap-rna interactions 98 d1yuza2 not modelled 12.1 38 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 99 c3alrA_ not modelled 12.1 50 PDB header:metal binding protein Chain: A: PDB Molecule:nanos protein; PDBTitle: crystal structure of nanos