Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	A	Q	P	V	D	I	Q	I	F	G	R	S	L	R	V	N	C	P	P	D	Q	R	D	A	L	N	Q	A	A	D	D	L	N	Q	R	L	Q	D	L	K	E	R	T	R	V	T	N	T	E	Q	L	V	F	I	A	A	L	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?												?	?	?	?	?	?	?																						?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Sequence		I	S	Y	E	L	A	Q	E	K	A	K	T	R	D	Y	A	A	S	M	E	Q	R	I	R	M	L	Q	Q	T	I	E	Q	A	L	L	E	Q	G	R	I	T	E	K	T	N	Q	N	F	E
Secondary structure
SS confidence
Disorder																																				?	?		?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1t3u chain A Region: 5 - 96 Aligned: 92 Modelled: 92 Confidence: 99.9% Identity: 27% Fold: Cell division protein ZapA-like Superfamily: Cell division protein ZapA-like Family: Cell division protein ZapA-like Phyre2 PDB 3hnw chain B Region: 5 - 107 Aligned: 102 Modelled: 103 Confidence: 99.8% Identity: 12% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 Phyre2 PDB 2ns5 chain A Region: 2 - 49 Aligned: 47 Modelled: 48 Confidence: 64.8% Identity: 11% PDB header:signaling protein Chain: A: PDB Molecule:partitioning-defective 3 homolog; PDBTitle: the conserved n-terminal domain of par-3 adopts a novel pb1-2 like structure required for par-3 oligomerization and3 apical membrane localization Phyre2 PDB 3hrd chain H Region: 1 - 23 Aligned: 23 Modelled: 23 Confidence: 64.2% Identity: 13% PDB header:oxidoreductase Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit; PDBTitle: crystal structure of nicotinate dehydrogenase Phyre2 PDB 1t3q chain A domain 2 Region: 5 - 23 Aligned: 19 Modelled: 19 Confidence: 52.3% Identity: 16% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin domains from multidomain proteins Phyre2 PDB 1rm6 chain C domain 2 Region: 1 - 23 Aligned: 22 Modelled: 22 Confidence: 50.0% Identity: 18% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin domains from multidomain proteins Phyre2 PDB 1vlb chain A domain 2 Region: 5 - 23 Aligned: 19 Modelled: 19 Confidence: 45.8% Identity: 11% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin domains from multidomain proteins Phyre2 PDB 1ffv chain A domain 2 Region: 3 - 23 Aligned: 21 Modelled: 21 Confidence: 44.1% Identity: 10% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin domains from multidomain proteins Phyre2 PDB 2x7a chain B Region: 57 - 104 Aligned: 48 Modelled: 48 Confidence: 42.3% Identity: 21% PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain Phyre2 PDB 1n62 chain A domain 2 Region: 5 - 23 Aligned: 19 Modelled: 19 Confidence: 40.6% Identity: 16% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin domains from multidomain proteins Phyre2 PDB 1t3q chain D Region: 5 - 23 Aligned: 19 Modelled: 19 Confidence: 38.8% Identity: 16% PDB header:oxidoreductase Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 Phyre2 PDB 1rm6 chain F Region: 1 - 23 Aligned: 22 Modelled: 23 Confidence: 37.4% Identity: 18% PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica Phyre2 PDB 1dgj chain A domain 2 Region: 4 - 23 Aligned: 20 Modelled: 20 Confidence: 37.4% Identity: 15% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin domains from multidomain proteins Phyre2 PDB 1x4r chain A Region: 2 - 17 Aligned: 16 Modelled: 16 Confidence: 33.5% Identity: 19% PDB header:apoptosis Chain: A: PDB Molecule:parp14 protein; PDBTitle: solution structure of wwe domain in parp14 protein Phyre2 PDB 1ffu chain A Region: 3 - 23 Aligned: 21 Modelled: 21 Confidence: 32.7% Identity: 10% PDB header:hydrolase Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor Phyre2 PDB 3c8y chain A domain 2 Region: 6 - 35 Aligned: 26 Modelled: 30 Confidence: 28.0% Identity: 27% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin domains from multidomain proteins Phyre2 PDB 1n60 chain D Region: 5 - 23 Aligned: 19 Modelled: 19 Confidence: 27.3% Identity: 16% PDB header:oxidoreductase Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain; PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form Phyre2 PDB 2fug chain 3 domain 3 Region: 6 - 35 Aligned: 26 Modelled: 30 Confidence: 22.5% Identity: 23% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin domains from multidomain proteins Phyre2 PDB 1hye chain A domain 2 Region: 13 - 43 Aligned: 31 Modelled: 31 Confidence: 22.0% Identity: 13% Fold: LDH C-terminal domain-like Superfamily: LDH C-terminal domain-like Family: Lactate & malate dehydrogenases, C-terminal domain Phyre2 PDB 1iue chain A Region: 5 - 31 Aligned: 25 Modelled: 27 Confidence: 21.4% Identity: 12% Fold: beta-Grasp (ubiquitin-like) Superfamily: 2Fe-2S ferredoxin-like Family: 2Fe-2S ferredoxin-related Phyre2 1 d1t3ua_ 2 c3hnwB_ 3 c2ns5A_ 4 c3hrdH_ 5 d1t3qa2 6 d1rm6c2 7 d1vlba2 8 d1ffva2 9 c2x7aB_ 10 d1n62a2 11 c1t3qD_ 12 c1rm6F_ 13 d1dgja2 14 c1x4rA_ 15 c1ffuA_ 16 d3c8ya2 17 c1n60D_ 18 d2fug33 19 d1hyea2 20 d1iuea_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1t3ua_ 99.9 27 Fold:Cell division protein ZapA-like Superfamily:Cell division protein ZapA-like Family:Cell division protein ZapA-like 2 c3hnwB_ 99.8 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750 3 c2ns5A_ 64.8 11 PDB header:signaling protein Chain: A: PDB Molecule:partitioning-defective 3 homolog; PDBTitle: the conserved n-terminal domain of par-3 adopts a novel pb1-2 like structure required for par-3 oligomerization and3 apical membrane localization 4 c3hrdH_ 64.2 13 PDB header:oxidoreductase Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit; PDBTitle: crystal structure of nicotinate dehydrogenase 5 d1t3qa2 52.3 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 6 d1rm6c2 50.0 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 7 d1vlba2 45.8 11 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 8 d1ffva2 44.1 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 9 c2x7aB_ 42.3 21 PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain 10 d1n62a2 40.6 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 11 c1t3qD_ 38.8 16 PDB header:oxidoreductase Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit; PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86 12 c1rm6F_ 37.4 18 PDB header:oxidoreductase Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica 13 d1dgja2 37.4 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 14 c1x4rA_ 33.5 19 PDB header:apoptosis Chain: A: PDB Molecule:parp14 protein; PDBTitle: solution structure of wwe domain in parp14 protein 15 c1ffuA_ 32.7 10 PDB header:hydrolase Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor 16 d3c8ya2 28.0 27 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 17 c1n60D_ 27.3 16 PDB header:oxidoreductase Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain; PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form 18 d2fug33 22.5 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 19 d1hyea2 22.0 13 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 20 d1iuea_ 21.4 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 21 c3htkA_ not modelled 20.2 22 PDB header:recombination/replication/ligase Chain: A: PDB Molecule:structural maintenance of chromosomes protein 5; PDBTitle: crystal structure of mms21 and smc5 complex 22 d2oq0a1 not modelled 19.9 16 Fold:OB-fold Superfamily:HIN-2000 domain-like Family:HIN-200/IF120x domain 23 c2fugC_ not modelled 17.4 24 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus 24 d1exbe_ not modelled 16.7 29 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 25 c3dryA_ not modelled 16.4 13 PDB header:unknown function Chain: A: PDB Molecule:btb/poz domain-containing protein kctd5; PDBTitle: x-ray crystal structure of human kctd5 protein crystallized in low-2 salt buffer 26 d1qdva_ not modelled 16.3 29 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 27 d1t1da_ not modelled 16.0 21 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 28 d1t95a2 not modelled 15.8 18 Fold:FYSH domain Superfamily:FYSH domain Family:Hypothetical protein AF0491, N-terminal domain 29 d2pw9a1 not modelled 15.8 17 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:FdhD/NarQ 30 c2oq0D_ not modelled 15.7 16 PDB header:protein binding Chain: D: PDB Molecule:gamma-interferon-inducible protein ifi-16; PDBTitle: crystal structure of the first hin-200 domain of interferon-inducible2 protein 16 31 d1dsxa_ not modelled 15.6 33 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 32 c2kanA_ not modelled 15.3 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ar3433a; PDBTitle: solution nmr structure of ubiquitin-like domain of2 arabidopsis thaliana protein at2g32350. northeast3 structural genomics consortium target ar3433a 33 c2it3B_ not modelled 14.7 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:upf0130 protein ph1069; PDBTitle: structure of ph1069 protein from pyrococcus horikoshii 34 c3b6yB_ not modelled 14.0 21 PDB header:protein binding Chain: B: PDB Molecule:gamma-interferon-inducible protein ifi-16; PDBTitle: crystal structure of the second hin-200 domain of interferon-inducible2 protein 16 35 c1c4cA_ not modelled 13.8 27 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (fe-only hydrogenase); PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum 36 c2kd0A_ not modelled 13.7 23 PDB header:signaling protein Chain: A: PDB Molecule:lrr repeats and ubiquitin-like domain-containing PDBTitle: nmr solution structure of o64736 protein from arabidopsis2 thaliana. northeast structural genomics consortium mega3 target ar3445a 37 c2x48B_ not modelled 12.9 22 PDB header:viral protein Chain: B: PDB Molecule:cag38821; PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1 38 c3cwiA_ not modelled 12.6 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 39 c2dvkA_ not modelled 12.2 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0130 protein ape0816; PDBTitle: crystal structure of hypothetical protein from aeropyrum pernix 40 d1a68a_ not modelled 11.9 21 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 41 d1wria_ not modelled 11.3 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 42 d1s1ga_ not modelled 11.0 13 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 43 d1st6a4 not modelled 10.9 24 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 44 c3drzE_ not modelled 10.9 13 PDB header:unknown function Chain: E: PDB Molecule:btb/poz domain-containing protein kctd5; PDBTitle: x-ray crystal structure of the n-terminal btb domain of human kctd52 protein 45 d1frra_ not modelled 10.7 12 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 46 c2yy0D_ not modelled 10.2 12 PDB header:transcription Chain: D: PDB Molecule:c-myc-binding protein; PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens 47 d3kvta_ not modelled 10.0 20 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 48 c2wukD_ not modelled 9.7 15 PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant 49 d1i5pa1 not modelled 9.6 31 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:delta-Endotoxin, C-terminal domain 50 d1y6ja2 not modelled 9.2 26 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 51 d1v86a_ not modelled 9.1 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 52 c2l5gB_ not modelled 9.1 16 PDB header:transcription regulator Chain: B: PDB Molecule:putative uncharacterized protein ncor2; PDBTitle: co-ordinates and 1h, 13c and 15n chemical shift assignments for the2 complex of gps2 53-90 and smrt 167-207 53 c1aq5C_ not modelled 9.0 13 PDB header:coiled-coil Chain: C: PDB Molecule:cartilage matrix protein; PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures 54 c1kd8E_ not modelled 8.9 10 PDB header:de novo protein Chain: E: PDB Molecule:gcn4 acid base heterodimer base-d12la16l; PDBTitle: x-ray structure of the coiled coil gcn4 acid base2 heterodimer acid-d12ia16v base-d12la16l 55 c3ghgK_ not modelled 8.8 10 PDB header:blood clotting Chain: K: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of human fibrinogen 56 d1ujra_ not modelled 8.8 13 Fold:WWE domain Superfamily:WWE domain Family:WWE domain 57 c2gzdC_ not modelled 8.3 16 PDB header:protein transport Chain: C: PDB Molecule:rab11 family-interacting protein 2; PDBTitle: crystal structure of rab11 in complex with rab11-fip2 58 d1lvfa_ not modelled 8.2 16 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 59 c3iz5J_ not modelled 7.9 19 PDB header:ribosome Chain: J: PDB Molecule:60s ribosomal protein l12 (l11p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 60 c2k4mA_ not modelled 7.7 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0146 protein mth_1000; PDBTitle: solution nmr structure of m. thermoautotrophicum protein2 mth_1000, northeast structural genomics consortium target3 tr8 61 d1hyha2 not modelled 7.7 19 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 62 d1wqga1 not modelled 7.4 14 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 63 c2xzrA_ not modelled 7.3 10 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 64 d2j0111 not modelled 7.3 10 Fold:L28p-like Superfamily:L28p-like Family:Ribosomal protein L28 65 d1an2a_ not modelled 7.2 15 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 66 c3p8cF_ not modelled 7.1 18 PDB header:protein binding Chain: F: PDB Molecule:abl interactor 2; PDBTitle: structure and control of the actin regulatory wave complex 67 d1a70a_ not modelled 7.1 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 68 d1gaqb_ not modelled 7.1 16 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 69 d1m94a_ not modelled 7.0 31 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 70 c1m94A_ not modelled 7.0 31 PDB header:structural genomics, signaling protein Chain: A: PDB Molecule:protein ynr032c-a; PDBTitle: solution structure of the yeast ubiquitin-like modifier2 protein hub1 71 d1p0ra_ not modelled 6.7 38 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 72 d1qu6a2 not modelled 6.7 8 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 73 d1jq4a_ not modelled 6.7 31 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 74 d1dd5a_ not modelled 6.6 11 Fold:RRF/tRNA synthetase additional domain-like Superfamily:Ribosome recycling factor, RRF Family:Ribosome recycling factor, RRF 75 d1i0za2 not modelled 6.6 26 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 76 d1oqya4 not modelled 6.5 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 77 c2i2rK_ not modelled 6.4 13 PDB header:transport protein Chain: K: PDB Molecule:potassium voltage-gated channel subfamily d member 3; PDBTitle: crystal structure of the kchip1/kv4.3 t1 complex 78 d1t3ta3 not modelled 6.4 19 Fold:PurS-like Superfamily:PurS-like Family:FGAM synthase PurL, PurS-like domain 79 c2odkD_ not modelled 6.3 25 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: putative prevent-host-death protein from nitrosomonas europaea 80 d1nkpa_ not modelled 6.0 15 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 81 c3fp9E_ not modelled 5.9 39 PDB header:hydrolase Chain: E: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of intern domain of proteasome-associated2 atpase, mycobacterium tuberculosis 82 d1uxja2 not modelled 5.9 23 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 83 d1awda_ not modelled 5.8 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin-related 84 d1v97a2 not modelled 5.8 19 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 85 d2cqla1 not modelled 5.8 35 Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6 86 d1whna_ not modelled 5.8 7 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD) 87 c2k1iA_ not modelled 5.7 29 PDB header:antimicrobial protein Chain: A: PDB Molecule:mucosal alpha-defensin; PDBTitle: synthesis, structure and activities of an oral mucosal2 alpha-defensin from rhesus macaque 88 d1gv0a2 not modelled 5.7 14 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 89 d1nkpb_ not modelled 5.6 10 Fold:HLH-like Superfamily:HLH, helix-loop-helix DNA-binding domain Family:HLH, helix-loop-helix DNA-binding domain 90 c1zmpD_ not modelled 5.5 42 PDB header:antimicrobial protein Chain: D: PDB Molecule:defensin 5; PDBTitle: crystal structure of human defensin-5 91 d1p9qc2 not modelled 5.5 17 Fold:FYSH domain Superfamily:FYSH domain Family:Hypothetical protein AF0491, N-terminal domain 92 c3m63B_ not modelled 5.4 19 PDB header:ligase/protein binding Chain: B: PDB Molecule:ubiquitin domain-containing protein dsk2; PDBTitle: crystal structure of ufd2 in complex with the ubiquitin-like (ubl)2 domain of dsk2 93 c3mkxC_ not modelled 5.4 19 PDB header:antiviral protein Chain: C: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: crystal structure of bst2/tetherin 94 d1krha3 not modelled 5.3 24 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 95 d2b7ta1 not modelled 5.3 14 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:Double-stranded RNA-binding domain (dsRBD)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0