Email l.a.kelley@imperial.ac.uk Description P33927 Date Thu Jan 5 11:52:49 GMT 2012 Unique Job ID a27f3525d5524660

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3cfuA_ 63.9 14 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 2 c3mk7K_ 51.6 12 PDB header:oxidoreductase Chain: K: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit n; PDBTitle: the structure of cbb3 cytochrome oxidase 3 d2affa1 47.6 28 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 4 c1r21A_ 46.8 30 PDB header:cell cycle Chain: A: PDB Molecule:antigen ki-67; PDBTitle: solution structure of human ki67 fha domain 5 c3rkoN_ 46.7 13 PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 6 c3lkxB_ 29.6 25 PDB header:chaperone Chain: B: PDB Molecule:nascent polypeptide-associated complex subunit alpha; PDBTitle: human nac dimerization domain 7 c2jp3A_ 29.3 29 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 8 c1agqB_ 27.3 42 PDB header:growth factor Chain: B: PDB Molecule:glial cell-derived neurotrophic factor; PDBTitle: glial cell-derived neurotrophic factor from rat 9 d1udxa3 26.2 29 Fold:Obg GTP-binding protein C-terminal domain Superfamily:Obg GTP-binding protein C-terminal domain Family:Obg GTP-binding protein C-terminal domain 10 d2ff4a3 20.9 29 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 11 d3b55a1 18.1 13 Fold:EreA/ChaN-like Superfamily:EreA/ChaN-like Family:EreA-like 12 c2radB_ 17.4 13 PDB header:biosynthetic protein Chain: B: PDB Molecule:succinoglycan biosynthesis protein; PDBTitle: crystal structure of the succinoglycan biosynthesis2 protein. northeast structural genomics consortium target3 bcr135 13 c1lcyA_ 16.7 14 PDB header:hydrolase Chain: A: PDB Molecule:htra2 serine protease; PDBTitle: crystal structure of the mitochondrial serine protease htra2 14 c3gqsB_ 14.8 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:adenylate cyclase-like protein; PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis 15 c1bhbA_ 14.0 31 PDB header:photoreceptor Chain: A: PDB Molecule:bacteriorhodopsin; PDBTitle: three-dimensional structure of (1-71) bacterioopsin2 solubilized in methanol-chloroform and sds micelles3 determined by 15n-1h heteronuclear nmr spectroscopy 16 d1dlpa1 13.9 19 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 17 c3rkoM_ 12.5 15 PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 18 c2zpmA_ 11.9 19 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b 19 d1l9bm_ 11.5 23 Fold:Bacterial photosystem II reaction centre, L and M subunits Superfamily:Bacterial photosystem II reaction centre, L and M subunits Family:Bacterial photosystem II reaction centre, L and M subunits 20 c3seeA_ 11.4 21 PDB header:sugar binding protein Chain: A: PDB Molecule:hypothetical sugar binding protein; PDBTitle: crystal structure of a hypothetical sugar binding protein (bt_4411)2 from bacteroides thetaiotaomicron vpi-5482 at 1.25 a resolution 21 c2kklA_ not modelled 10.2 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). 22 c3poaA_ not modelled 10.0 14 PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions 23 c2l9uA_ not modelled 9.9 31 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3; PDBTitle: spatial structure of dimeric erbb3 transmembrane domain 24 d2o3ga1 not modelled 9.9 27 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 25 d2j8cm1 not modelled 9.8 23 Fold:Bacterial photosystem II reaction centre, L and M subunits Superfamily:Bacterial photosystem II reaction centre, L and M subunits Family:Bacterial photosystem II reaction centre, L and M subunits 26 d2f69a1 not modelled 9.6 20 Fold:open-sided beta-meander Superfamily:Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Family:Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 27 c2r76A_ not modelled 9.6 15 PDB header:lipoprotein Chain: A: PDB Molecule:rare lipoprotein b; PDBTitle: crystal structure of the rare lipoprotein b (so_1173) from shewanella2 oneidensis, northeast structural genomics consortium target sor91a 28 d2i4sa1 not modelled 9.4 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:EpsC C-terminal domain-like 29 c3pv4A_ not modelled 9.3 33 PDB header:hydrolase Chain: A: PDB Molecule:degq; PDBTitle: structure of legionella fallonii degq (delta-pdz2 variant) 30 d3dtua1 not modelled 9.1 11 Fold:Cytochrome c oxidase subunit I-like Superfamily:Cytochrome c oxidase subunit I-like Family:Cytochrome c oxidase subunit I-like 31 c2jo1A_ not modelled 8.9 19 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 32 d2bgca2 not modelled 8.8 80 Fold:Double-stranded beta-helix Superfamily:cAMP-binding domain-like Family:Listeriolysin regulatory protein PrfA, N-terminal domain 33 d1hdmb2 not modelled 8.7 83 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 34 c4a0kB_ not modelled 8.6 75 PDB header:ligase/dna-binding protein/dna Chain: B: PDB Molecule:e3 ubiquitin-protein ligase rbx1; PDBTitle: structure of ddb1-ddb2-cul4a-rbx1 bound to a 12 bp abasic2 site containing dna-duplex 35 c3uotB_ not modelled 8.5 7 PDB header:cell cycle Chain: B: PDB Molecule:mediator of dna damage checkpoint protein 1; PDBTitle: crystal structure of mdc1 fha domain in complex with a phosphorylated2 peptide from the mdc1 n-terminus 36 c2lezA_ not modelled 8.5 20 PDB header:signaling protein Chain: A: PDB Molecule:secreted effector protein pipb2; PDBTitle: solution nmr structure of n-terminal domain of salmonella effector2 protein pipb2. northeast structural genomics consortium (nesg) target3 stt318a 37 d2i6va1 not modelled 8.4 18 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:EpsC C-terminal domain-like 38 d1x9la_ not modelled 8.3 13 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:DR1885-like metal-binding protein Family:DR1885-like metal-binding protein 39 d1rl2a2 not modelled 8.1 20 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 40 d2p13a1 not modelled 8.0 16 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 41 c2q04C_ not modelled 7.9 43 PDB header:transferase Chain: C: PDB Molecule:acetoin utilization protein; PDBTitle: crystal structure of acetoin utilization protein (zp_00540088.1) from2 exiguobacterium sibiricum 255-15 at 2.33 a resolution 42 c2kjpA_ not modelled 7.8 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ylbl; PDBTitle: solution structure of protein ylbl (bsu15050) from bacillus2 subtilis, northeast structural genomics consortium target3 sr713a 43 c1yj5C_ not modelled 7.5 7 PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 44 c3ia8A_ not modelled 7.5 29 PDB header:metal binding protein Chain: A: PDB Molecule:thap domain-containing protein 4; PDBTitle: the structure of the c-terminal heme nitrobindin domain of thap2 domain-containing protein 4 from homo sapiens 45 c2p3wB_ not modelled 7.4 17 PDB header:protein binding Chain: B: PDB Molecule:probable serine protease htra3; PDBTitle: crystal structure of the htra3 pdz domain bound to a phage-derived2 ligand (fgrwv) 46 c3htxA_ not modelled 7.3 19 PDB header:transferase/rna Chain: A: PDB Molecule:hen1; PDBTitle: crystal structure of small rna methyltransferase hen1 47 c1hgvA_ not modelled 7.3 21 PDB header:virus Chain: A: PDB Molecule:ph75 inovirus major coat protein; PDBTitle: filamentous bacteriophage ph75 48 d2qgma1 not modelled 7.3 13 Fold:EreA/ChaN-like Superfamily:EreA/ChaN-like Family:EreA-like 49 c2qgmA_ not modelled 7.3 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:succinoglycan biosynthesis protein; PDBTitle: crystal structure of succinoglycan biosynthesis protein at2 the resolution 1.7 a. northeast structural genomics3 consortium target bcr136. 50 d1eysm_ not modelled 7.3 18 Fold:Bacterial photosystem II reaction centre, L and M subunits Superfamily:Bacterial photosystem II reaction centre, L and M subunits Family:Bacterial photosystem II reaction centre, L and M subunits 51 c3rkoL_ not modelled 7.3 13 PDB header:oxidoreductase Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 52 c3mpbA_ not modelled 7.2 14 PDB header:isomerase Chain: A: PDB Molecule:sugar isomerase; PDBTitle: z5688 from e. coli o157:h7 bound to fructose 53 d1gh6b2 not modelled 7.2 27 Fold:Cyclin-like Superfamily:Cyclin-like Family:Retinoblastoma tumor suppressor domains 54 c3i18A_ not modelled 7.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lmo2051 protein; PDBTitle: crystal structure of the pdz domain of the sdrc-like protein2 (lmo2051) from listeria monocytogenes, northeast structural3 genomics consortium target lmr166b 55 c3stjC_ not modelled 7.1 24 PDB header:hydrolase Chain: C: PDB Molecule:protease degq; PDBTitle: crystal structure of the protease + pdz1 domain of degq from2 escherichia coli 56 c3eh4A_ not modelled 7.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c oxidase subunit 1; PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus 57 c1sddB_ not modelled 6.9 17 PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor v; PDBTitle: crystal structure of bovine factor vai 58 c3lw52_ not modelled 6.9 21 PDB header:photosynthesis Chain: 2: PDB Molecule:type ii chlorophyll a/b binding protein from photosystem i; PDB Fragment:residues 81-246; PDBTitle: improved model of plant photosystem i 59 d1q90r_ not modelled 6.8 31 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 60 c1q90R_ not modelled 6.8 31 PDB header:photosynthesis Chain: R: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 61 c1dlpA_ not modelled 6.8 19 PDB header:sugar binding protein Chain: A: PDB Molecule:lectin scafet precursor; PDBTitle: structural characterization of the native fetuin-binding2 protein scilla campanulata agglutinin (scafet): a novel3 two-domain lectin 62 d1e57a_ not modelled 6.7 29 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tymoviridae-like VP 63 d1r45a_ not modelled 6.6 11 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:ADP-ribosylating toxins 64 c1zrtD_ not modelled 6.6 10 PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound 65 d1uapa_ not modelled 6.6 15 Fold:OB-fold Superfamily:TIMP-like Family:Netrin-like domain (NTR/C345C module) 66 c2yvxD_ not modelled 6.5 18 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 67 d1qbaa2 not modelled 6.4 9 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Bacterial chitobiase, n-terminal domain 68 d1vqoa2 not modelled 6.3 27 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 69 c2rf9D_ not modelled 6.3 43 PDB header:transferase Chain: D: PDB Molecule:erbb receptor feedback inhibitor 1; PDBTitle: crystal structure of the complex between the egfr kinase2 domain and a mig6 peptide 70 d1i32a2 not modelled 6.3 18 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 71 d1ggaa2 not modelled 6.3 24 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 72 d2r7ga2 not modelled 6.3 27 Fold:Cyclin-like Superfamily:Cyclin-like Family:Retinoblastoma tumor suppressor domains 73 d2z9ia1 not modelled 6.2 11 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:HtrA-like serine proteases 74 d2o1ra1 not modelled 6.2 21 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 75 d2plia1 not modelled 6.2 23 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 76 c2kl1A_ not modelled 6.2 18 PDB header:protein binding Chain: A: PDB Molecule:ylbl protein; PDBTitle: solution structure of gtr34c from geobacillus thermodenitrificans.2 northeast structural genomics consortium target gtr34c 77 c2bbjB_ not modelled 6.1 12 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 78 d2pkqo2 not modelled 6.1 18 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 79 d2brfa1 not modelled 6.1 8 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 80 d1t3la2 not modelled 6.1 36 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 81 c3llbA_ not modelled 6.1 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1 82 d1q90n_ not modelled 6.1 35 Fold:Single transmembrane helix Superfamily:PetN subunit of the cytochrome b6f complex Family:PetN subunit of the cytochrome b6f complex 83 d2c8aa1 not modelled 6.1 11 Fold:ADP-ribosylation Superfamily:ADP-ribosylation Family:ADP-ribosylating toxins 84 d1vjja2 not modelled 6.0 8 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 85 d3deda1 not modelled 6.0 16 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CorC/HlyC domain-like 86 c3dedB_ not modelled 6.0 16 PDB header:membrane protein Chain: B: PDB Molecule:probable hemolysin; PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum 87 c1qcrD_ not modelled 5.9 19 PDB header: PDB COMPND: 88 d1uhta_ not modelled 5.9 18 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 89 d1e57b_ not modelled 5.9 29 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tymoviridae-like VP 90 c3cwbQ_ not modelled 5.9 16 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 91 c2l5bA_ not modelled 5.8 33 PDB header:apoptosis Chain: A: PDB Molecule:activator of apoptosis harakiri; PDBTitle: solution structure of the transmembrane domain of bcl-2 member2 harakiri in micelles 92 d1k3ta2 not modelled 5.8 24 Fold:FwdE/GAPDH domain-like Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain Family:GAPDH-like 93 d2vera1 not modelled 5.8 40 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Dr-family adhesin 94 d1vf5c3 not modelled 5.8 24 Fold:Single transmembrane helix Superfamily:Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor Family:Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor 95 d1rhzb_ not modelled 5.7 24 Fold:Single transmembrane helix Superfamily:Preprotein translocase SecE subunit Family:Preprotein translocase SecE subunit 96 c2bovB_ not modelled 5.7 11 PDB header:transferase Chain: B: PDB Molecule:mono-adp-ribosyltransferase c3; PDBTitle: molecular recognition of an adp-ribosylating clostridium2 botulinum c3 exoenzyme by rala gtpase 97 c3p56F_ not modelled 5.6 17 PDB header:hydrolase/replication Chain: F: PDB Molecule:ribonuclease h2 subunit c; PDBTitle: the structure of the human rnase h2 complex defines key interaction2 interfaces relevant to enzyme function and human disease 98 d1ng0c_ not modelled 5.6 38 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Tombusviridae-like VP 99 d1fftc_ not modelled 5.5 7 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like