Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	E	F	S	Q	T	V	P	E	L	V	A	W	A	R	K	N	D	F	S	I	S	L	P	V	D	R	L	S	F	L	L	A	V	A	T	L	N	G	E	R	L	D	G	E	M	S	E	G	E	L	V	D	A	F	R	H	V	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?										?																					?				?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	A	F	E	Q	T	S	E	T	I	G	V	R	A	N	N	A	I	N	D	M	V	R	Q	R	L	L	N	R	F	T	S	E	Q	A	E	G	N	A	I	Y	R	L	T	P	L	G	I	G	I	T	D	Y	Y	I	R	Q	R	E	F
Secondary structure
SS confidence
Disorder							?	?	?	?	?	?	?																		?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	T	L	R	L	S	M	Q	L	S	I	V	A	G	E	L	K	R	A	A	D	A	A	E	E	G	G	D	E	F	H	W	H	R	N	V	Y	A	P	L	K	Y	S	V	A	E	I	F	D	S	I	D	L	T	Q	R	L	M	D	E
Secondary structure
SS confidence
Disorder																									?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	Q	Q	Q	V	K	D	D	I	A	Q	L	L	N	K	D	W	R	A	A	I	S	S	C	E	L	L	L	S	E	T	S	G	T	L	R	E	L	Q	D	T	L	E	A	A	G	D	K	L	Q	A	N	L	L	R	I	Q	D	A	T
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		M	T	H	D	D	L	H	F	V	D	R	L	V	F	D	L	Q	S	K	L	D	R	I	I	S	W	G	Q	Q	S	I	D	L	W	I	G	Y	D	R	H	V	H	K	F	I	R	T	A	I	D	M	D	K	N	R	V	F	A	Q	R
Secondary structure
SS confidence
Disorder					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	R	Q	S	V	Q	T	Y	F	D	E	P	W	A	L	T	Y	A	N	A	D	R	L	L	D	M	R	D	E	E	M	A	L	R	D	E	E	V	T	G	E	L	P	E	D	L	E	Y	E	E	F	N	E	I	R	E	Q	L	A	A
Secondary structure
SS confidence
Disorder								?																?					?	?	?			?	?		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		I	I	E	E	Q	L	A	V	Y	K	T	R	Q	V	P	L	D	L	G	L	V	V	R	E	Y	L	S	Q	Y	P	R	A	R	H	F	D	V	A	R	I	V	I	D	Q	A	V	R	L	G	V	A	Q	A	D	F	T	G	L	P	A
Secondary structure
SS confidence
Disorder												?	?	?	?	?	?	?												?	?																	?	?	?			?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Sequence		K	W	Q	P	I	N	D	Y	G	A	K	V	Q	A	H	V	I	D	K	Y
Secondary structure
SS confidence
Disorder									?								?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3euh chain B Region: 7 - 327 Aligned: 321 Modelled: 321 Confidence: 100.0% Identity: 100% PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of the muke-mukf complex Phyre2 PDB 1t98 chain B Region: 5 - 281 Aligned: 260 Modelled: 277 Confidence: 100.0% Identity: 98% PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of mukf(1-287) Phyre2 PDB 1t98 chain A domain 2 Region: 119 - 281 Aligned: 163 Modelled: 163 Confidence: 100.0% Identity: 98% Fold: STAT-like Superfamily: MukF C-terminal domain-like Family: MukF C-terminal domain-like Phyre2 PDB 1t98 chain A domain 1 Region: 8 - 118 Aligned: 103 Modelled: 111 Confidence: 100.0% Identity: 98% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MukF N-terminal domain-like Phyre2 PDB 3euj chain B Region: 353 - 440 Aligned: 88 Modelled: 88 Confidence: 100.0% Identity: 47% PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, symmetric dimer Phyre2 PDB 1fnn chain A domain 1 Region: 23 - 88 Aligned: 65 Modelled: 66 Confidence: 88.7% Identity: 15% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Helicase DNA-binding domain Phyre2 PDB 1f5t chain A Region: 23 - 149 Aligned: 108 Modelled: 116 Confidence: 87.8% Identity: 16% PDB header:transcription/dna Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence Phyre2 PDB 2fsw chain A domain 1 Region: 67 - 125 Aligned: 59 Modelled: 59 Confidence: 81.0% Identity: 15% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: HxlR-like Phyre2 PDB 2rqp chain A Region: 21 - 105 Aligned: 77 Modelled: 80 Confidence: 80.7% Identity: 12% PDB header:gene regulation Chain: A: PDB Molecule:heterochromatin protein 1-binding protein 3; PDBTitle: the solution structure of heterochromatin protein 1-binding2 protein 74 histone h1 like domain Phyre2 PDB 2v79 chain B Region: 22 - 119 Aligned: 86 Modelled: 98 Confidence: 78.8% Identity: 19% PDB header:dna-binding protein Chain: B: PDB Molecule:dna replication protein dnad; PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis Phyre2 PDB 4a5m chain H Region: 67 - 123 Aligned: 57 Modelled: 57 Confidence: 77.5% Identity: 12% PDB header:transcription Chain: H: PDB Molecule:uncharacterized hth-type transcriptional regulator yybr; PDBTitle: redox regulator hypr in its oxidized form Phyre2 PDB 1tdp chain A Region: 70 - 117 Aligned: 47 Modelled: 48 Confidence: 74.9% Identity: 28% Fold: Bromodomain-like Superfamily: Bacteriocin immunity protein-like Family: Carnobacteriocin B2 immunity protein Phyre2 PDB 3g2b chain A Region: 48 - 87 Aligned: 40 Modelled: 40 Confidence: 71.6% Identity: 15% PDB header:biosynthetic protein Chain: A: PDB Molecule:coenzyme pqq synthesis protein d; PDBTitle: crystal structure of pqqd from xanthomonas campestris Phyre2 PDB 3df8 chain A Region: 58 - 112 Aligned: 51 Modelled: 55 Confidence: 71.4% Identity: 18% PDB header:transcription Chain: A: PDB Molecule:possible hxlr family transcriptional factor; PDBTitle: the crystal structure of a possible hxlr family transcriptional factor2 from thermoplasma volcanium gss1 Phyre2 PDB 1z7u chain A domain 1 Region: 67 - 123 Aligned: 57 Modelled: 57 Confidence: 71.3% Identity: 14% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: HxlR-like Phyre2 PDB 3e6m chain D Region: 21 - 112 Aligned: 75 Modelled: 81 Confidence: 69.1% Identity: 21% PDB header:transcription regulator Chain: D: PDB Molecule:marr family transcriptional regulator; PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss. Phyre2 PDB 3hru chain A Region: 31 - 149 Aligned: 98 Modelled: 119 Confidence: 68.0% Identity: 17% PDB header:transcription Chain: A: PDB Molecule:metalloregulator scar; PDBTitle: crystal structure of scar with bound zn2+ Phyre2 PDB 2x4h chain A Region: 24 - 149 Aligned: 105 Modelled: 122 Confidence: 66.0% Identity: 14% PDB header:transcription Chain: A: PDB Molecule:hypothetical protein sso2273; PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus Phyre2 PDB 2nyx chain B Region: 74 - 148 Aligned: 75 Modelled: 75 Confidence: 63.9% Identity: 16% PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404; PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis Phyre2 PDB 2hzt chain A domain 1 Region: 67 - 114 Aligned: 48 Modelled: 48 Confidence: 63.5% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: HxlR-like Phyre2 1 c3euhB_ 2 c1t98B_ 3 d1t98a2 4 d1t98a1 5 c3eujB_ 6 d1fnna1 7 c1f5tA_ 8 d2fswa1 9 c2rqpA_ 10 c2v79B_ 11 c4a5mH_ 12 d1tdpa_ 13 c3g2bA_ 14 c3df8A_ 15 d1z7ua1 16 c3e6mD_ 17 c3hruA_ 18 c2x4hA_ 19 c2nyxB_ 20 d2hzta1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3euhB_ 100.0 100 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of the muke-mukf complex 2 c1t98B_ 100.0 98 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of mukf(1-287) 3 d1t98a2 100.0 98 Fold:STAT-like Superfamily:MukF C-terminal domain-like Family:MukF C-terminal domain-like 4 d1t98a1 100.0 98 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MukF N-terminal domain-like 5 c3eujB_ 100.0 47 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, symmetric dimer 6 d1fnna1 88.7 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Helicase DNA-binding domain 7 c1f5tA_ 87.8 16 PDB header:transcription/dna Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: diphtheria tox repressor (c102d mutant) complexed with2 nickel and dtxr consensus binding sequence 8 d2fswa1 81.0 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:HxlR-like 9 c2rqpA_ 80.7 12 PDB header:gene regulation Chain: A: PDB Molecule:heterochromatin protein 1-binding protein 3; PDBTitle: the solution structure of heterochromatin protein 1-binding2 protein 74 histone h1 like domain 10 c2v79B_ 78.8 19 PDB header:dna-binding protein Chain: B: PDB Molecule:dna replication protein dnad; PDBTitle: crystal structure of the n-terminal domain of dnad from2 bacillus subtilis 11 c4a5mH_ 77.5 12 PDB header:transcription Chain: H: PDB Molecule:uncharacterized hth-type transcriptional regulator yybr; PDBTitle: redox regulator hypr in its oxidized form 12 d1tdpa_ 74.9 28 Fold:Bromodomain-like Superfamily:Bacteriocin immunity protein-like Family:Carnobacteriocin B2 immunity protein 13 c3g2bA_ 71.6 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:coenzyme pqq synthesis protein d; PDBTitle: crystal structure of pqqd from xanthomonas campestris 14 c3df8A_ 71.4 18 PDB header:transcription Chain: A: PDB Molecule:possible hxlr family transcriptional factor; PDBTitle: the crystal structure of a possible hxlr family transcriptional factor2 from thermoplasma volcanium gss1 15 d1z7ua1 71.3 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:HxlR-like 16 c3e6mD_ 69.1 21 PDB header:transcription regulator Chain: D: PDB Molecule:marr family transcriptional regulator; PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss. 17 c3hruA_ 68.0 17 PDB header:transcription Chain: A: PDB Molecule:metalloregulator scar; PDBTitle: crystal structure of scar with bound zn2+ 18 c2x4hA_ 66.0 14 PDB header:transcription Chain: A: PDB Molecule:hypothetical protein sso2273; PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus 19 c2nyxB_ 63.9 16 PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404; PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis 20 d2hzta1 63.5 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:HxlR-like 21 d2p6ra1 not modelled 62.8 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RecQ helicase DNA-binding domain-like 22 d1yyva1 not modelled 60.9 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:HxlR-like 23 c2h09A_ not modelled 59.5 13 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator mntr; PDBTitle: crystal structure of diphtheria toxin repressor like protein2 from e. coli 24 c3f8fA_ not modelled 57.7 11 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, padr-like family; PDBTitle: crystal structure of multidrug binding transcriptional regulator lmrr2 complexed with daunomycin 25 c3g3zA_ not modelled 56.5 14 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis 26 c3odnA_ not modelled 55.4 13 PDB header:membrane protein Chain: A: PDB Molecule:dally-like protein; PDBTitle: the crystal structure of drosophila dally-like protein core domain 27 d1hsta_ not modelled 55.1 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 28 c2it0A_ not modelled 54.7 18 PDB header:transcription/dna Chain: A: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii 29 c1xmaA_ not modelled 54.4 12 PDB header:transcription Chain: A: PDB Molecule:predicted transcriptional regulator; PDBTitle: structure of a transcriptional regulator from clostridium thermocellum2 cth-833 30 d1xmaa_ not modelled 54.4 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PadR-like 31 c3l09B_ not modelled 54.3 17 PDB header:transcription regulator Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator2 (jann_22dec04_contig27_revised_gene3569) from jannaschia sp. ccs1 at3 2.81 a resolution 32 d1i7da_ not modelled 53.8 10 Fold:Prokaryotic type I DNA topoisomerase Superfamily:Prokaryotic type I DNA topoisomerase Family:Prokaryotic type I DNA topoisomerase 33 d1lnwa_ not modelled 52.6 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 34 d1s3ja_ not modelled 52.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 35 d1uhma_ not modelled 52.5 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 36 d2f2ea1 not modelled 50.5 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:HxlR-like 37 c3hhhA_ not modelled 47.3 11 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, padr family; PDBTitle: crystal structure of transcriptional regulator, a member of padr2 family, from enterococcus faecalis v583 38 c3f3xA_ not modelled 47.0 12 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family, putative; PDBTitle: crystal structure of the transcriptional regulator bldr2 from sulfolobus solfataricus 39 d2juza1 not modelled 45.8 37 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 40 c2gxgA_ not modelled 43.0 11 PDB header:transcription Chain: A: PDB Molecule:146aa long hypothetical transcriptional regulator; PDBTitle: crystal structure of emrr homolog from hyperthermophilic archaea2 sulfolobus tokodaii strain7 41 c2o59B_ not modelled 42.6 10 PDB header:isomerase/dna Chain: B: PDB Molecule:dna topoisomerase 3; PDBTitle: structure of e. coli topoisomerase iii in complex with an 8-2 base single stranded oligonucleotide. frozen in glycerol3 ph 8.0 42 d1ghca_ not modelled 42.1 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 43 d2a61a1 not modelled 40.1 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 44 d2fbha1 not modelled 38.5 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 45 d1ussa_ not modelled 37.9 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 46 c3bpxB_ not modelled 37.7 17 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of marr 47 d1yqaa1 not modelled 36.8 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 48 d1ub9a_ not modelled 36.8 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 49 c1fx7C_ not modelled 36.7 18 PDB header:signaling protein Chain: C: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of the iron-dependent regulator (ider)2 from mycobacterium tuberculosis 50 d1usta_ not modelled 36.0 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 51 d2etha1 not modelled 35.8 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 52 d2qtia1 not modelled 35.2 33 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 53 c3k0lA_ not modelled 34.6 15 PDB header:transcription regulator Chain: A: PDB Molecule:repressor protein; PDBTitle: crystal structure of putative marr family transcriptional2 regulator from acinetobacter sp. adp 54 c3mkyP_ not modelled 33.0 15 PDB header:dna binding protein/dna Chain: P: PDB Molecule:protein sopb; PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form 55 c3ri2B_ not modelled 32.6 17 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, padr-like family; PDBTitle: crystal structure of padr family transcriptional regulator from2 eggerthella lenta dsm 2243 56 c3bj6B_ not modelled 32.6 21 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcription regulator sp03579 57 d2jrxa1 not modelled 32.5 37 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 58 c3s1bA_ not modelled 31.5 31 PDB header:signaling protein Chain: A: PDB Molecule:mini-z; PDBTitle: the development of peptide-based tools for the analysis of2 angiogenesis 59 d1p4xa2 not modelled 31.0 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 60 c1fnnB_ not modelled 30.7 13 PDB header:cell cycle Chain: B: PDB Molecule:cell division control protein 6; PDBTitle: crystal structure of cdc6p from pyrobaculum aerophilum 61 d2juwa1 not modelled 30.4 32 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 62 d1qoja_ not modelled 29.9 43 Fold:Long alpha-hairpin Superfamily:C-terminal UvrC-binding domain of UvrB Family:C-terminal UvrC-binding domain of UvrB 63 d1lj9a_ not modelled 28.2 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 64 d2fbia1 not modelled 28.0 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 65 d1jgsa_ not modelled 27.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 66 c2fxaB_ not modelled 26.3 16 PDB header:transcription Chain: B: PDB Molecule:protease production regulatory protein hpr; PDBTitle: structure of the protease production regulatory protein hpr from2 bacillus subtilis. 67 d1lj8a3 not modelled 26.3 10 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Mannitol 2-dehydrogenase 68 c3nrvC_ not modelled 25.3 8 PDB header:transcription regulator Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family); PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1 69 c3mkzU_ not modelled 24.9 15 PDB header:dna-binding protein/dna Chain: U: PDB Molecule:protein sopb; PDBTitle: structure of sopb(155-272)-18mer complex, p21 form 70 c3bjaA_ not modelled 24.7 12 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family, putative; PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution 71 c1w0jB_ not modelled 24.6 13 PDB header:hydrolase Chain: B: PDB Molecule:atp synthase alpha chain heart isoform, PDBTitle: beryllium fluoride inhibited bovine f1-atpase 72 d2frha1 not modelled 24.2 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 73 d2jpqa1 not modelled 24.1 26 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 74 d2bv6a1 not modelled 23.7 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 75 d2pv4a1 not modelled 23.5 34 Fold:Sama2622-like Superfamily:Sama2622-like Family:Sama2622-like 76 d1hsja1 not modelled 22.0 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 77 c2pjhA_ not modelled 21.8 11 PDB header:transport protein Chain: A: PDB Molecule:nuclear protein localization protein 4 homolog; PDBTitle: strctural model of the p97 n domain- npl4 ubd complex 78 c3fm5D_ not modelled 20.8 14 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator; PDBTitle: x-ray crystal structure of transcriptional regulator (marr family)2 from rhodococcus sp. rha1 79 d2hr3a1 not modelled 20.4 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 80 c2vn2B_ not modelled 20.2 17 PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426 81 d1l4ia2 not modelled 20.1 43 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 82 c2ov2O_ not modelled 19.8 44 PDB header:protein binding/transferase Chain: O: PDB Molecule:serine/threonine-protein kinase pak 4; PDBTitle: the crystal structure of the human rac3 in complex with the crib2 domain of human p21-activated kinase 4 (pak4) 83 c3ls1A_ not modelled 19.7 12 PDB header:photosynthesis Chain: A: PDB Molecule:sll1638 protein; PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+ 84 d1p5va2 not modelled 19.3 56 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 85 d1iuqa_ not modelled 19.3 16 Fold:Glycerol-3-phosphate (1)-acyltransferase Superfamily:Glycerol-3-phosphate (1)-acyltransferase Family:Glycerol-3-phosphate (1)-acyltransferase 86 c1qpxA_ not modelled 19.0 29 PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers 87 c2qe7C_ not modelled 18.4 13 PDB header:hydrolase Chain: C: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1 88 c1qunA_ not modelled 18.1 67 PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli 89 d3bwuc2 not modelled 17.9 47 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 90 d2co7b2 not modelled 17.9 44 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 91 c2qenA_ not modelled 17.6 13 PDB header:unknown function Chain: A: PDB Molecule:walker-type atpase; PDBTitle: the walker-type atpase paby2304 of pyrococcus abyssi 92 c2r9vA_ not modelled 17.5 12 PDB header:hydrolase Chain: A: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution 93 c3q48B_ not modelled 17.5 42 PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone 94 d1zara1 not modelled 17.3 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Rio2 serine protein kinase N-terminal domain 95 d2otaa1 not modelled 17.3 26 Fold:YejL-like Superfamily:YejL-like Family:YejL-like 96 c3l7wA_ not modelled 17.3 12 PDB header:transcription Chain: A: PDB Molecule:putative uncharacterized protein smu.1704; PDBTitle: the crystal structure of smu.1704 from streptococcus mutans ua159 97 c1g3wA_ not modelled 17.2 15 PDB header:gene regulation Chain: A: PDB Molecule:diphtheria toxin repressor; PDBTitle: cd-cys102ser dtxr 98 d1p4xa1 not modelled 17.1 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 99 d2j2za2 not modelled 17.0 42 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0