Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	M	N	K	S	L	I	V	L	C	L	S	A	G	L	L	A	S	A	P	G	I	S	L	A	D	V	N	Y	V	P	Q	N	T	S	D	A	P	A	I	P	S	A	A	L	Q	Q	L	T	W	T	P	V	D	Q	S	K	T	Q
Secondary structure
SS confidence
Disorder		?	?	?	?													?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	T	Q	L	A	T	G	G	Q	Q	L	N	V	P	G	I	S	G	P	V	A	A	Y	S	V	P	A	N	I	G	E	L	T	L	T	L	T	S	E	V	N	K	Q	T	S	V	F	A	P	N	V	L	I	L	D	Q	N	M	T	P
Secondary structure
SS confidence
Disorder								?		?	?	?	?	?	?	?												?	?	?	?	?										?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	A	F	F	P	S	S	Y	F	T	Y	Q	E	P	G	V	M	S	A	D	R	L	E	G	V	M	R	L	T	P	A	L	G	Q	Q	K	L	Y	V	L	V	F	T	T	E	K	D	L	Q	Q	T	T	Q	L	L	D	P	A	K	A
Secondary structure
SS confidence
Disorder								?								?	?												?		?																			?	?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Y	A	K	G	V	G	N	S	I	P	D	I	P	D	P	V	A	R	H	T	T	D	G	L	L	K	L	K	V	K	T	N	S	S	S	S	V	L	V	G	P	L	F	G	S	S	A	P	A	P	V	T	V	G	N	T	A	A	P	A
Secondary structure
SS confidence
Disorder						?	?	?	?	?																							?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	A	A	P	A	P	A	P	V	K	K	S	E	P	M	L	N	D	T	E	S	Y	F	N	T	A	I	K	N	A	V	A	K	G	D	V	D	K	A	L	K	L	L	D	E	A	E	R	L	G	S	T	S	A	R	S	T	F	I	S
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?			?																?														?		?
Disorder confidence
		.	.	.	.	.	.
Sequence		S	V	K	G	K	G
Secondary structure
SS confidence
Disorder				?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1wcr chain A Region: 258 - 288 Aligned: 30 Modelled: 31 Confidence: 57.0% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:pts system, n, n'-diacetylchitobiose-specific PDBTitle: trimeric structure of the enzyme iia from escherichia coli2 phosphotransferase system specific for n,n'-3 diacetylchitobiose Phyre2 PDB 2x0k chain B Region: 265 - 283 Aligned: 19 Modelled: 19 Confidence: 53.4% Identity: 32% PDB header:transferase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribf; PDBTitle: crystal structure of modular fad synthetase from2 corynebacterium ammoniagenes Phyre2 PDB 3op1 chain A Region: 265 - 283 Aligned: 19 Modelled: 19 Confidence: 53.1% Identity: 47% PDB header:transferase Chain: A: PDB Molecule:macrolide-efflux protein; PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae Phyre2 PDB 1t6z chain B Region: 265 - 283 Aligned: 19 Modelled: 19 Confidence: 45.4% Identity: 32% PDB header:transferase Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase; PDBTitle: crystal structure of riboflavin bound tm379 Phyre2 PDB 1vli chain A Region: 273 - 290 Aligned: 18 Modelled: 18 Confidence: 40.4% Identity: 39% PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution Phyre2 PDB 1mrz chain A domain 2 Region: 265 - 283 Aligned: 19 Modelled: 19 Confidence: 39.2% Identity: 32% Fold: Adenine nucleotide alpha hydrolase-like Superfamily: Nucleotidylyl transferase Family: Adenylyltransferase Phyre2 PDB 1xuz chain A Region: 273 - 290 Aligned: 18 Modelled: 18 Confidence: 39.2% Identity: 28% PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol Phyre2 PDB 3dza chain B Region: 268 - 289 Aligned: 22 Modelled: 22 Confidence: 37.5% Identity: 41% PDB header:unknown function Chain: B: PDB Molecule:uncharacterized putative membrane protein; PDBTitle: crystal structure of a putative membrane protein of unknown function2 (yfdx) from klebsiella pneumoniae subsp. at 1.65 a resolution Phyre2 PDB 3rjv chain A Region: 273 - 298 Aligned: 26 Modelled: 26 Confidence: 37.2% Identity: 23% PDB header:protein binding Chain: A: PDB Molecule:putative sel1 repeat protein; PDBTitle: crystal structure of a putative sel1 repeat protein (kpn_04481) from2 klebsiella pneumoniae subsp. pneumoniae at 1.65 a resolution Phyre2 PDB 2zdr chain A domain 2 Region: 273 - 290 Aligned: 18 Modelled: 18 Confidence: 34.0% Identity: 28% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: NeuB-like Phyre2 PDB 1vli chain A domain 2 Region: 273 - 290 Aligned: 18 Modelled: 18 Confidence: 33.9% Identity: 39% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: NeuB-like Phyre2 PDB 2e2a chain A Region: 258 - 288 Aligned: 30 Modelled: 31 Confidence: 33.7% Identity: 40% Fold: Spectrin repeat-like Superfamily: Enzyme IIa from lactose specific PTS, IIa-lac Family: Enzyme IIa from lactose specific PTS, IIa-lac Phyre2 PDB 3l8r chain A Region: 258 - 288 Aligned: 30 Modelled: 31 Confidence: 33.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:putative pts system, cellobiose-specific iia PDBTitle: the crystal structure of ptca from s. mutans Phyre2 PDB 3k1s chain E Region: 258 - 288 Aligned: 30 Modelled: 31 Confidence: 33.0% Identity: 20% PDB header:transferase Chain: E: PDB Molecule:pts system, cellobiose-specific iia component; PDBTitle: crystal structure of the pts cellobiose specific enzyme iia2 from bacillus anthracis Phyre2 PDB 2b4j chain C domain 1 Region: 263 - 293 Aligned: 31 Modelled: 31 Confidence: 24.8% Identity: 32% Fold: N-cbl like Superfamily: HIV integrase-binding domain Family: HIV integrase-binding domain Phyre2 PDB 1z9e chain A Region: 263 - 293 Aligned: 31 Modelled: 31 Confidence: 23.9% Identity: 32% PDB header:protein binding/transcription Chain: A: PDB Molecule:pc4 and sfrs1 interacting protein 2; PDBTitle: solution structure of the hiv-1 integrase-binding domain in2 ledgf/p75 Phyre2 PDB 1klx chain A Region: 273 - 298 Aligned: 26 Modelled: 26 Confidence: 23.7% Identity: 31% Fold: alpha-alpha superhelix Superfamily: HCP-like Family: HCP-like Phyre2 PDB 1hw1 chain A domain 2 Region: 263 - 285 Aligned: 23 Modelled: 23 Confidence: 23.1% Identity: 13% Fold: GntR ligand-binding domain-like Superfamily: GntR ligand-binding domain-like Family: GntR ligand-binding domain-like Phyre2 PDB 1xb2 chain B Region: 273 - 295 Aligned: 23 Modelled: 23 Confidence: 21.7% Identity: 30% PDB header:translation Chain: B: PDB Molecule:elongation factor ts, mitochondrial; PDBTitle: crystal structure of bos taurus mitochondrial elongation2 factor tu/ts complex Phyre2 PDB 2v43 chain A Region: 85 - 134 Aligned: 47 Modelled: 50 Confidence: 20.5% Identity: 15% PDB header:regulator Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb; PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli Phyre2 1 c1wcrA_ 2 c2x0kB_ 3 c3op1A_ 4 c1t6zB_ 5 c1vliA_ 6 d1mrza2 7 c1xuzA_ 8 c3dzaB_ 9 c3rjvA_ 10 d2zdra2 11 d1vlia2 12 d2e2aa_ 13 c3l8rA_ 14 c3k1sE_ 15 d2b4jc1 16 c1z9eA_ 17 d1klxa_ 18 d1hw1a2 19 c1xb2B_ 20 c2v43A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1wcrA_ 57.0 27 PDB header:transferase Chain: A: PDB Molecule:pts system, n, n'-diacetylchitobiose-specific PDBTitle: trimeric structure of the enzyme iia from escherichia coli2 phosphotransferase system specific for n,n'-3 diacetylchitobiose 2 c2x0kB_ 53.4 32 PDB header:transferase Chain: B: PDB Molecule:riboflavin biosynthesis protein ribf; PDBTitle: crystal structure of modular fad synthetase from2 corynebacterium ammoniagenes 3 c3op1A_ 53.1 47 PDB header:transferase Chain: A: PDB Molecule:macrolide-efflux protein; PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae 4 c1t6zB_ 45.4 32 PDB header:transferase Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase; PDBTitle: crystal structure of riboflavin bound tm379 5 c1vliA_ 40.4 39 PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution 6 d1mrza2 39.2 32 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Adenylyltransferase 7 c1xuzA_ 39.2 28 PDB header:biosynthetic protein Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac; PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol 8 c3dzaB_ 37.5 41 PDB header:unknown function Chain: B: PDB Molecule:uncharacterized putative membrane protein; PDBTitle: crystal structure of a putative membrane protein of unknown function2 (yfdx) from klebsiella pneumoniae subsp. at 1.65 a resolution 9 c3rjvA_ 37.2 23 PDB header:protein binding Chain: A: PDB Molecule:putative sel1 repeat protein; PDBTitle: crystal structure of a putative sel1 repeat protein (kpn_04481) from2 klebsiella pneumoniae subsp. pneumoniae at 1.65 a resolution 10 d2zdra2 34.0 28 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 11 d1vlia2 33.9 39 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 12 d2e2aa_ 33.7 40 Fold:Spectrin repeat-like Superfamily:Enzyme IIa from lactose specific PTS, IIa-lac Family:Enzyme IIa from lactose specific PTS, IIa-lac 13 c3l8rA_ 33.0 23 PDB header:transferase Chain: A: PDB Molecule:putative pts system, cellobiose-specific iia PDBTitle: the crystal structure of ptca from s. mutans 14 c3k1sE_ 33.0 20 PDB header:transferase Chain: E: PDB Molecule:pts system, cellobiose-specific iia component; PDBTitle: crystal structure of the pts cellobiose specific enzyme iia2 from bacillus anthracis 15 d2b4jc1 24.8 32 Fold:N-cbl like Superfamily:HIV integrase-binding domain Family:HIV integrase-binding domain 16 c1z9eA_ 23.9 32 PDB header:protein binding/transcription Chain: A: PDB Molecule:pc4 and sfrs1 interacting protein 2; PDBTitle: solution structure of the hiv-1 integrase-binding domain in2 ledgf/p75 17 d1klxa_ 23.7 31 Fold:alpha-alpha superhelix Superfamily:HCP-like Family:HCP-like 18 d1hw1a2 23.1 13 Fold:GntR ligand-binding domain-like Superfamily:GntR ligand-binding domain-like Family:GntR ligand-binding domain-like 19 c1xb2B_ 21.7 30 PDB header:translation Chain: B: PDB Molecule:elongation factor ts, mitochondrial; PDBTitle: crystal structure of bos taurus mitochondrial elongation2 factor tu/ts complex 20 c2v43A_ 20.5 15 PDB header:regulator Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb; PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli 21 d3bula1 not modelled 19.6 17 Fold:Methionine synthase domain-like Superfamily:Methionine synthase domain Family:Methionine synthase domain 22 d2gy9t1 not modelled 18.8 29 Fold:Spectrin repeat-like Superfamily:Ribosomal protein S20 Family:Ribosomal protein S20 23 c2wtoB_ not modelled 18.2 10 PDB header:metal binding protein Chain: B: PDB Molecule:orf131 protein; PDBTitle: crystal structure of apo-form czce from c. metallidurans ch34 24 d1aipc1 not modelled 17.7 46 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 25 d2cp9a1 not modelled 17.5 31 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 26 d1jr3d1 not modelled 17.5 26 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 27 c1o7dC_ not modelled 17.0 21 PDB header:hydrolase Chain: C: PDB Molecule:lysosomal alpha-mannosidase; PDBTitle: the structure of the bovine lysosomal a-mannosidase2 suggests a novel mechanism for low ph activation 28 d1efub3 not modelled 15.7 23 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 29 d1ouva_ not modelled 15.6 19 Fold:alpha-alpha superhelix Superfamily:HCP-like Family:HCP-like 30 d2a2pa1 not modelled 15.2 28 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related 31 d1xb2b1 not modelled 14.8 31 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 32 d2uubt1 not modelled 14.8 21 Fold:Spectrin repeat-like Superfamily:Ribosomal protein S20 Family:Ribosomal protein S20 33 d1nqja_ not modelled 13.6 23 Fold:CUB-like Superfamily:Collagen-binding domain Family:Collagen-binding domain 34 d2ve8a1 not modelled 13.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FtsK C-terminal domain-like 35 c3pnxF_ not modelled 12.3 14 PDB header:transferase Chain: F: PDB Molecule:putative sulfurtransferase dsre; PDBTitle: crystal structure of a putative sulfurtransferase dsre (swol_2425)2 from syntrophomonas wolfei str. goettingen at 1.92 a resolution 36 d2fzta1 not modelled 12.0 31 Fold:Methionine synthase domain-like Superfamily:TM0693-like Family:TM0693-like 37 c2kc7A_ not modelled 11.8 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bfr218_protein; PDBTitle: solution nmr structure of bacteroides fragilis protein2 bf1650. northeast structural genomics consortium target3 bfr218 38 d2j5pa1 not modelled 11.5 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FtsK C-terminal domain-like 39 d2a4ha1 not modelled 11.5 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related 40 d1q98a_ not modelled 11.1 10 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 41 d1jr3a1 not modelled 10.9 16 Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain 42 c3fgaD_ not modelled 10.8 25 PDB header:hydrolase/hydrolase inhibitor Chain: D: PDB Molecule:shugoshin-like 1; PDBTitle: structural basis of pp2a and sgo interaction 43 c3s9jA_ not modelled 10.6 15 PDB header:unknown function Chain: A: PDB Molecule:member of duf4221 family; PDBTitle: crystal structure of a member of duf4221 family (bvu_1028) from2 bacteroides vulgatus atcc 8482 at 1.75 a resolution 44 c2hs5A_ not modelled 10.5 35 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator gntr; PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator gntr from rhodococcus sp. rha1 45 c3eyiB_ not modelled 10.4 20 PDB header:dna binding protein/dna Chain: B: PDB Molecule:z-dna-binding protein 1; PDBTitle: the crystal structure of the second z-dna binding domain of2 human dai (zbp1) in complex with z-dna 46 d1wtea_ not modelled 10.4 26 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoO109IR 47 c2dbaA_ not modelled 10.3 17 PDB header:structural protein Chain: A: PDB Molecule:smooth muscle cell associated protein-1, isoform PDBTitle: the solution structure of the tetratrico peptide repeat of2 human smooth muscle cell associated protein-1, isoform 2 48 c2kjfA_ not modelled 10.0 47 PDB header:antimicrobial protein Chain: A: PDB Molecule:carnocyclin-a; PDBTitle: the solution structure of the circular bacteriocin2 carnocyclin a (ccla) 49 d2csfa1 not modelled 9.6 25 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:CUT domain 50 d2q07a1 not modelled 9.3 29 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 51 c2yfrA_ not modelled 9.3 32 PDB header:transferase Chain: A: PDB Molecule:levansucrase; PDBTitle: crystal structure of inulosucrase from lactobacillus2 johnsonii ncc533 52 c2f06B_ not modelled 9.0 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0572 from bacteroides thetaiotaomicron 53 c3dwlG_ not modelled 8.9 26 PDB header:structural protein Chain: G: PDB Molecule:actin-related protein 2/3 complex subunit 5; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 54 d2ey4e1 not modelled 8.8 16 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 55 d1z5ye1 not modelled 8.7 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 56 d1w96c1 not modelled 8.7 5 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like 57 d1zhva2 not modelled 8.4 38 Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like 58 c3bx6A_ not modelled 8.3 6 PDB header:signaling protein Chain: A: PDB Molecule:alpha-1-acid glycoprotein; PDBTitle: crystal structure of human alpha 1 acid glycoprotein 59 d1st9a_ not modelled 8.1 6 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 60 c3do9C_ not modelled 8.1 27 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:upf0302 protein ba_1542/gbaa1542/bas1430; PDBTitle: crystal structure of protein ba1542 from bacillus anthracis2 str.ames 61 d1a9xa1 not modelled 7.8 29 Fold:Carbamoyl phosphate synthetase, large subunit connection domain Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain Family:Carbamoyl phosphate synthetase, large subunit connection domain 62 c3b5nC_ not modelled 7.8 32 PDB header:membrane protein Chain: C: PDB Molecule:protein transport protein sec9; PDBTitle: structure of the yeast plasma membrane snare complex 63 d2hs5a2 not modelled 7.7 36 Fold:GntR ligand-binding domain-like Superfamily:GntR ligand-binding domain-like Family:GntR ligand-binding domain-like 64 d1td6a_ not modelled 7.6 17 Fold:Hypothetical protein MPN330 Superfamily:Hypothetical protein MPN330 Family:Hypothetical protein MPN330 65 c2r73C_ not modelled 7.5 11 PDB header:transport protein Chain: C: PDB Molecule:trichosurin; PDBTitle: crystal structure of the possum milk whey lipocalin2 trichosurin at ph 8.2 66 d1seda_ not modelled 7.4 16 Fold:Hypothetical protein YhaI Superfamily:Hypothetical protein YhaI Family:Hypothetical protein YhaI 67 d1sena_ not modelled 7.3 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 68 c1senA_ not modelled 7.3 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:thioredoxin-like protein p19; PDBTitle: endoplasmic reticulum protein rp19 o95881 69 c2l57A_ not modelled 7.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of an uncharacterized thioredoin-like protein from2 clostridium perfringens 70 c1mh3A_ not modelled 7.1 21 PDB header:sugar binding, dna binding protein Chain: A: PDB Molecule:maltose binding-a1 homeodomain protein chimera; PDBTitle: maltose binding-a1 homeodomain protein chimera, crystal2 form i 71 c2z4hB_ not modelled 6.8 14 PDB header:signaling protein activator Chain: B: PDB Molecule:copper homeostasis protein cutf; PDBTitle: crystal structure of the cpx pathway activator nlpe from2 escherichia coli 72 c3sxkB_ not modelled 6.7 23 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: zn2+-bound fcd domain of tm0439, a putative transcriptional regulator 73 d1ulza1 not modelled 6.6 14 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like 74 c1aipG_ not modelled 6.6 46 PDB header:complex of two elongation factors Chain: G: PDB Molecule:elongation factor ts; PDBTitle: ef-tu ef-ts complex from thermus thermophilus 75 d1rsoa_ not modelled 6.3 50 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 76 c2kckA_ not modelled 6.2 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:tpr repeat; PDBTitle: nmr solution structure of the northeast structural genomics2 consortium (nesg) target mrr121a 77 d2f06a1 not modelled 6.2 25 Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like 78 d2aqaa1 not modelled 6.1 26 Fold:Rubredoxin-like Superfamily:Nop10-like SnoRNP Family:Nucleolar RNA-binding protein Nop10-like 79 d1vqqa1 not modelled 6.1 6 Fold:Cystatin-like Superfamily:NTF2-like Family:Penicillin binding protein 2a (PBP2A), N-terminal domain 80 c1ztyA_ not modelled 6.0 20 PDB header:sugar binding protein, signaling protein Chain: A: PDB Molecule:chitin oligosaccharide binding protein; PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein 81 c3isyA_ not modelled 5.9 5 PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution 82 d1veja1 not modelled 5.9 36 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 83 d2k0bx1 not modelled 5.8 33 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 84 c3fmsA_ not modelled 5.8 15 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, gntr family; PDBTitle: crystal structure of tm0439, a gntr transcriptional2 regulator 85 c3eiqC_ not modelled 5.7 20 PDB header:hydrolase/antitumor protein Chain: C: PDB Molecule:programmed cell death protein 4; PDBTitle: crystal structure of pdcd4-eif4a 86 c2ju5A_ not modelled 5.6 18 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin disulfide isomerase; PDBTitle: dsbh oxidoreductase 87 c3nztA_ not modelled 5.6 8 PDB header:ligase Chain: A: PDB Molecule:glutamate--cysteine ligase; PDBTitle: 2.0 angstrom crystal structure of glutamate--cysteine ligase (gsha)2 ftom francisella tularensis in complex with amp 88 c3fk8A_ not modelled 5.6 9 PDB header:isomerase Chain: A: PDB Molecule:disulphide isomerase; PDBTitle: the crystal structure of disulphide isomerase from xylella fastidiosa2 temecula1 89 d1w96a1 not modelled 5.5 5 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like 90 c2yruA_ not modelled 5.5 11 PDB header:apoptosis Chain: A: PDB Molecule:steroid receptor rna activator 1; PDBTitle: solution structure of mouse steroid receptor rna activator2 1 (sra1) protein 91 d1ppya_ not modelled 5.3 18 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Pyruvoyl dependent aspartate decarboxylase, ADC 92 d1d9ea_ not modelled 5.3 10 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 93 c1efuB_ not modelled 5.3 23 PDB header:complex (two elongation factors) Chain: B: PDB Molecule:elongation factor ts; PDBTitle: elongation factor complex ef-tu/ef-ts from escherichia coli 94 c3msvB_ not modelled 5.2 23 PDB header:protein binding Chain: B: PDB Molecule:nuclear import adaptor, nro1; PDBTitle: the hypoxic regulator of sterol synthesis nro1 is a nuclear import2 adaptor 95 c2qyxB_ not modelled 5.1 32 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein mj0159; PDBTitle: crystal structure of uncharacterized protein mj0159 from2 methanocaldococcus jannaschii 96 c3ia1A_ not modelled 5.1 24 PDB header:oxidoreductase Chain: A: PDB Molecule:thio-disulfide isomerase/thioredoxin; PDBTitle: crystal structure of thio-disulfide isomerase from thermus2 thermophilus 97 d3d4ub1 not modelled 5.1 19 Fold:Defensin-like Superfamily:Defensin-like Family:Tick carboxypeptidase inhibitor-like 98 c2jy5A_ not modelled 5.0 36 PDB header:signaling protein Chain: A: PDB Molecule:ubiquilin-1; PDBTitle: nmr structure of ubiquilin 1 uba domain 99 c3kcmC_ not modelled 5.0 13 PDB header:oxidoreductase Chain: C: PDB Molecule:thioredoxin family protein; PDBTitle: the crystal structure of thioredoxin protein from geobacter2 metallireducens

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0