Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP37197
DateThu Jan 5 11:55:03 GMT 2012
Unique Job ID9df9369f98793b01

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2vhdB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form
Confidence and coverage
Confidence:100.0% Coverage: 65%
303 residues ( 65% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
445 residues ( 96%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAVSENNKVLGFLREKGCD
Secondary structure 
SS confidence 
Disorder  ?????
?
????????????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  YCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAALLADKPVSQSDLNKIEWVM
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  QYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYASNDTAPEHRNEPVQPIPQKL
Secondary structure 
SS confidence 
Disorder 
??
?
??
????
???????????
???
????????
?
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  PTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGVDGRKTSIGVGGAVGPINAPTVF
Secondary structure 
SS confidence 
Disorder  ???
????
?
????
?
?
??????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  NSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSWDEIIAKLEKDPQLKTQFLEVYPQG
Secondary structure 
SS confidence 
Disorder 
??
??
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  FSGENITDAIAEFEKTLITPDSPFDKWLRGDENALTAQQKKGYQLFKDNKCATCHGGIIL
Secondary structure 
SS confidence 
Disorder 
?????
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  GGRSFEPLGLKKDFNFGEITAADIGRMNVTKEERDKLRQKVPGLRNVALTAPYFHRGDVP
Secondary structure 
SS confidence 
Disorder 
??
?
Disorder confidence 
 
   .........430.........440.........450.........460.....
Sequence  TLDGAVKLMLRYQVGKELPQEDVDDIVAFLHSLNGVYTPYMQDKQ
Secondary structure 
SS confidence 
Disorder 
?????????
?????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2vhd chain B

3D model

Region: 159 - 462
Aligned: 303
Modelled: 304
Confidence: 100.0%
Identity: 44%
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form

Phyre2

PDB 3o5c chain A

3D model

Region: 171 - 462
Aligned: 288
Modelled: 292
Confidence: 100.0%
Identity: 44%
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis

Phyre2

PDB 1iqc chain B

3D model

Region: 169 - 462
Aligned: 290
Modelled: 294
Confidence: 100.0%
Identity: 47%
PDB header:oxidoreductase
Chain: B: PDB Molecule:di-heme peroxidase;
PDBTitle: crystal structure of di-heme peroxidase from nitrosomonas europaea

Phyre2

PDB 2c1u chain B

3D model

Region: 164 - 460
Aligned: 288
Modelled: 297
Confidence: 100.0%
Identity: 42%
PDB header:oxidoreductase
Chain: B: PDB Molecule:di-haem cytochrome c peroxidase;
PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form

Phyre2

PDB 1nml chain A

3D model

Region: 175 - 462
Aligned: 277
Modelled: 288
Confidence: 100.0%
Identity: 44%
PDB header:oxidoreductase
Chain: A: PDB Molecule:di-haem cytochrome c peroxidase;
PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0)

Phyre2

PDB 3l4o chain B

3D model

Region: 183 - 463
Aligned: 280
Modelled: 281
Confidence: 100.0%
Identity: 36%
PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:methylamine utilization protein maug;
PDBTitle: crystal structure of the maug/pre-methylamine dehydrogenase complex2 after treatment with hydrogen peroxide

Phyre2

PDB 3hq7 chain A

3D model

Region: 175 - 461
Aligned: 264
Modelled: 287
Confidence: 100.0%
Identity: 44%
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant

Phyre2

PDB 1zzh chain A

3D model

Region: 173 - 462
Aligned: 270
Modelled: 290
Confidence: 100.0%
Identity: 43%
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c peroxidase;
PDBTitle: structure of the fully oxidized di-heme cytochrome c2 peroxidase from r. capsulatus

Phyre2

PDB 1iqc chain A domain 2

3D model

Region: 319 - 462
Aligned: 141
Modelled: 144
Confidence: 100.0%
Identity: 45%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Di-heme cytochrome c peroxidase

Phyre2

PDB 1eb7 chain A domain 2

3D model

Region: 319 - 461
Aligned: 137
Modelled: 143
Confidence: 100.0%
Identity: 53%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Di-heme cytochrome c peroxidase

Phyre2

PDB 1nml chain A domain 1

3D model

Region: 151 - 320
Aligned: 161
Modelled: 170
Confidence: 100.0%
Identity: 41%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Di-heme cytochrome c peroxidase

Phyre2

PDB 1iqc chain A domain 1

3D model

Region: 169 - 318
Aligned: 149
Modelled: 150
Confidence: 100.0%
Identity: 48%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Di-heme cytochrome c peroxidase

Phyre2

PDB 1eb7 chain A domain 1

3D model

Region: 167 - 318
Aligned: 151
Modelled: 152
Confidence: 100.0%
Identity: 40%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Di-heme cytochrome c peroxidase

Phyre2

PDB 1nml chain A domain 2

3D model

Region: 321 - 461
Aligned: 131
Modelled: 141
Confidence: 100.0%
Identity: 45%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Di-heme cytochrome c peroxidase

Phyre2

PDB 3oa8 chain A

3D model

Region: 179 - 458
Aligned: 212
Modelled: 219
Confidence: 99.9%
Identity: 14%
PDB header:heme-binding protein/heme-binding protei
Chain: A: PDB Molecule:soxa;
PDBTitle: diheme soxax

Phyre2

PDB 1h32 chain A

3D model

Region: 186 - 454
Aligned: 185
Modelled: 210
Confidence: 99.5%
Identity: 17%
PDB header:electron transfer
Chain: A: PDB Molecule:diheme cytochrome c;
PDBTitle: reduced soxax complex from rhodovulum sulfidophilum

Phyre2

PDB 2c1d chain C

3D model

Region: 186 - 454
Aligned: 179
Modelled: 200
Confidence: 99.4%
Identity: 16%
PDB header:oxidoreductase
Chain: C: PDB Molecule:soxa;
PDBTitle: crystal structure of soxxa from p. pantotrophus

Phyre2

PDB 3mk7 chain F

3D model

Region: 150 - 454
Aligned: 205
Modelled: 227
Confidence: 98.9%
Identity: 21%
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase

Phyre2

PDB 1wej chain F

3D model

Region: 339 - 456
Aligned: 93
Modelled: 94
Confidence: 98.9%
Identity: 17%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 1j3s chain A

3D model

Region: 339 - 456
Aligned: 93
Modelled: 94
Confidence: 98.9%
Identity: 19%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2

PDB 2xts chain D

3D model

Region: 49 - 220
Aligned: 142
Modelled: 142
Confidence: 98.3%
Identity: 17%
PDB header:oxidoreductase/electron transport
Chain: D: PDB Molecule:cytochrome;
PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus

Phyre2

PDB 3o0r chain C

3D model

Region: 2 - 167
Aligned: 138
Modelled: 138
Confidence: 98.3%
Identity: 13%
PDB header:immune system/oxidoreductase
Chain: C: PDB Molecule:nitric oxide reductase subunit c;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment

Phyre2
1
c2vhdB_
2
c3o5cA_
3
c1iqcB_
4
c2c1uB_
5
c1nmlA_
6
c3l4oB_
7
c3hq7A_
8
c1zzhA_
9
d1iqca2
10
d1eb7a2
11
d1nmla1
12
d1iqca1
13
d1eb7a1
14
d1nmla2
15
c3oa8A_
16
c1h32A_
17
c2c1dC_
18
c3mk7F_
19
d1wejf_
20
d1j3sa_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
c2xtsD_
40
41
c3o0rC_
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2vhdB_
100.0 44 PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form
2c3o5cA_
100.0 44 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis
3c1iqcB_
100.0 47 PDB header:oxidoreductase
Chain: B: PDB Molecule:di-heme peroxidase;
PDBTitle: crystal structure of di-heme peroxidase from nitrosomonas europaea
4c2c1uB_
100.0 42 PDB header:oxidoreductase
Chain: B: PDB Molecule:di-haem cytochrome c peroxidase;
PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form
5c1nmlA_
100.0 44 PDB header:oxidoreductase
Chain: A: PDB Molecule:di-haem cytochrome c peroxidase;
PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0)
6c3l4oB_
100.0 36 PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:methylamine utilization protein maug;
PDBTitle: crystal structure of the maug/pre-methylamine dehydrogenase complex2 after treatment with hydrogen peroxide
7c3hq7A_
100.0 44 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant
8c1zzhA_
100.0 43 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c peroxidase;
PDBTitle: structure of the fully oxidized di-heme cytochrome c2 peroxidase from r. capsulatus
9d1iqca2
100.0 45 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
10d1eb7a2
100.0 53 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
11d1nmla1
100.0 41 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
12d1iqca1
100.0 48 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
13d1eb7a1
100.0 40 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
14d1nmla2
100.0 45 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
15c3oa8A_
99.9 14 PDB header:heme-binding protein/heme-binding protei
Chain: A: PDB Molecule:soxa;
PDBTitle: diheme soxax
16c1h32A_
99.5 17 PDB header:electron transfer
Chain: A: PDB Molecule:diheme cytochrome c;
PDBTitle: reduced soxax complex from rhodovulum sulfidophilum
17c2c1dC_
99.4 16 PDB header:oxidoreductase
Chain: C: PDB Molecule:soxa;
PDBTitle: crystal structure of soxxa from p. pantotrophus
18c3mk7F_
98.9 21 PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
19d1wejf_
98.9 17 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
20d1j3sa_
98.9 19 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
21d1lfma_
not modelled 98.8 23 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
22d1co6a_
not modelled 98.7 17 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
23d1h32b_
not modelled 98.6 16 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
24c1fcdD_
not modelled 98.6 24 PDB header:electron transport(flavocytochrome)
Chain: D: PDB Molecule:flavocytochrome c sulfide dehydrogenase
PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution
25d1cxca_
not modelled 98.6 21 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
26d1cota_
not modelled 98.6 16 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
27d3c2ca_
not modelled 98.6 15 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
28d1ccra_
not modelled 98.6 15 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
29d1yeba_
not modelled 98.6 18 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
30d1i8oa_
not modelled 98.6 19 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
31d1ycca_
not modelled 98.6 18 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
32c2w9kA_
not modelled 98.5 23 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crithidia fasciculata cytochrome c
33d1jdla_
not modelled 98.5 21 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
34d1hroa_
not modelled 98.5 22 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
35d1ytca_
not modelled 98.5 18 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
36d1ql3a_
not modelled 98.4 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
37c3mk7B_
not modelled 98.4 23 PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o;
PDBTitle: the structure of cbb3 cytochrome oxidase
38c2c1dB_
not modelled 98.3 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:soxx;
PDBTitle: crystal structure of soxxa from p. pantotrophus
39c2xtsD_
98.3 17 PDB header:oxidoreductase/electron transport
Chain: D: PDB Molecule:cytochrome;
PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus
40c1w2lA_
not modelled 98.3 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome oxidase subunit ii;
PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase
41c3o0rC_
98.3 13 PDB header:immune system/oxidoreductase
Chain: C: PDB Molecule:nitric oxide reductase subunit c;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
42c1m70D_
not modelled 98.3 19 PDB header:electron transport
Chain: D: PDB Molecule:cytochrome c4;
PDBTitle: crystal structure of oxidized recombinant cytochrome c4 from2 pseudomonas stutzeri
43c3m97X_
not modelled 98.2 20 PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c-552;
PDBTitle: structure of the soluble domain of cytochrome c552 with its flexible2 linker segment from paracoccus denitrificans
44d2gc4d1
not modelled 98.1 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
45d2c8sa1
not modelled 98.1 27 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
46c3cp5A_
not modelled 98.1 27 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: cytochrome c from rhodothermus marinus
47d1vyda_
not modelled 98.1 25 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
48d1h32a2
not modelled 98.0 16 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c SoxA
49d1qn2a_
not modelled 98.0 19 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
50d351ca_
not modelled 98.0 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
51d1lmsa_
not modelled 98.0 15 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
52d1dvva_
not modelled 97.9 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
53c2d0wA_
not modelled 97.9 26 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome cl;
PDBTitle: crystal structure of cytochrome cl from hyphomicrobium2 denitrificans
54d1fi3a_
not modelled 97.9 27 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
55d1m70a2
not modelled 97.8 19 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
56c3dr0B_
not modelled 97.8 20 PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c6;
PDBTitle: structure of reduced cytochrome c6 from synechococcus sp.2 pcc 7002
57c2l4dA_
not modelled 97.8 13 PDB header:electron transport
Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c;
PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida
58d1a56a_
not modelled 97.8 17 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
59d1wvec1
not modelled 97.8 25 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
60d1cora_
not modelled 97.7 25 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
61d1kb0a1
not modelled 97.7 29 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
62c2d0sA_
not modelled 97.7 30 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus
63d1c75a_
not modelled 97.7 19 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
64c1h1oA_
not modelled 97.7 22 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c-552;
PDBTitle: acidithiobacillus ferrooxidans cytochrome c4 structure2 supports a complex-induced tuning of electron transfer
65d1ynra1
not modelled 97.7 26 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
66d1h1oa2
not modelled 97.7 19 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
67d1ls9a_
not modelled 97.6 19 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
68d1c6ra_
not modelled 97.6 16 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
69d1qksa1
not modelled 97.6 31 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
70d1kx7a_
not modelled 97.6 22 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
71d1m70a1
not modelled 97.6 21 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
72d1dvha_
not modelled 97.6 31 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
73c3dmiA_
not modelled 97.6 18 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c6;
PDBTitle: crystallization and structural analysis of cytochrome c62 from the diatom phaeodactylum tricornutum at 1.5 a3 resolution
74d1fcdc2
not modelled 97.6 27 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
75c2zxyA_
not modelled 97.5 25 PDB header:oxygen binding, transport protein
Chain: A: PDB Molecule:cytochrome c552;
PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus
76d155ca_
not modelled 97.5 16 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
77d1c53a_
not modelled 97.5 27 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
78d1cc5a_
not modelled 97.5 18 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
79d1kv9a1
not modelled 97.5 23 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
80d1c52a_
not modelled 97.5 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
81d1e29a_
not modelled 97.5 22 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
82d1mz4a_
not modelled 97.5 18 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
83c2zzsW_
not modelled 97.5 21 PDB header:electron transport
Chain: W: PDB Molecule:
PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633
84c2v07A_
not modelled 97.5 26 PDB header:photosynthesis
Chain: A: PDB Molecule:cytochrome c6;
PDBTitle: structure of the arabidopsis thaliana cytochrome c6a v52q2 variant
85d1c6sa_
not modelled 97.5 18 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
86d1cnoa_
not modelled 97.4 25 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
87d1f1ca_
not modelled 97.4 18 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
88d1ctja_
not modelled 97.4 14 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
89d1hj3a1
not modelled 97.3 29 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
90c2zonG_
not modelled 97.3 21 PDB header:oxidoreductase/electron transport
Chain: G: PDB Molecule:cytochrome c551;
PDBTitle: crystal structure of electron transfer complex of nitrite2 reductase with cytochrome c
91d1gdva_
not modelled 97.2 19 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
92c1p84D_
not modelled 97.1 24 PDB header:oxidoreductase
Chain: D: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
93c3cu4A_
not modelled 97.1 27 PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens
94d1fcdc1
not modelled 97.0 17 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
95d1h32a1
not modelled 96.9 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c SoxA
96c1w5cT_
not modelled 96.9 9 PDB header:photosynthesis
Chain: T: PDB Molecule:cytochrome c-550;
PDBTitle: photosystem ii from thermosynechococcus elongatus
97d1cyja_
not modelled 96.9 20 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
98d1dy7b1
not modelled 96.9 12 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
99d1ppjd1
not modelled 96.8 21 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Cytochrome bc1 domain
100d1nira1
not modelled 96.8 13 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
101d1h9xa1
not modelled 96.8 11 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
102d1hzua1
not modelled 96.7 13 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
103d1f1fa_
not modelled 96.6 13 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
104c2zooA_
not modelled 96.6 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable nitrite reductase;
PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125
105d1dw0a_
not modelled 96.6 24 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
106d1gksa_
not modelled 96.5 25 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
107d1e2rb1
not modelled 96.4 11 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
108c3oa8B_
not modelled 96.4 12 PDB header:heme-binding protein/heme-binding protei
Chain: B: PDB Molecule:soxx;
PDBTitle: diheme soxax
109d1gu2a_
not modelled 96.3 21 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
110c2bpbB_
not modelled 96.2 21 PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b;
PDBTitle: sulfite dehydrogenase from starkeya novella
111c1nnoA_
not modelled 96.0 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrite reductase;
PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa
112c1pbyA_
not modelled 95.8 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda
PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution
113c1jmxA_
not modelled 95.7 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:amine dehydrogenase;
PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida
114c1kb0A_
not modelled 95.6 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase;
PDBTitle: crystal structure of quinohemoprotein alcohol dehydrogenase from2 comamonas testosteroni
115c1kv9A_
not modelled 95.2 30 PDB header:oxidoreductase
Chain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase;
PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5
116d1h1oa1
not modelled 95.2 11 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
117d1pbya1
not modelled 95.1 38 Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
118c1zrtD_
not modelled 94.9 28 PDB header:oxidoreductase/metal transport
Chain: D: PDB Molecule:cytochrome c1;
PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound
119c3cwbQ_
not modelled 94.7 32 PDB header:oxidoreductase
Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
120c2fynH_
not modelled 94.6 42 PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c1;
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0