17/01/2012 16:44:29 : INFO  : Run start: Tue Jan 17 16:44:28 GMT 2012
17/01/2012 16:44:37 : INFO  : Initialised job
17/01/2012 16:44:39 : INFO  : Renaming log file 'phyre2_20120117_164426.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/9df9369f98793b01/phyre_20120117_164426.log'
17/01/2012 16:44:41 : INFO  : Initialised job:
Sequence
>batch____
MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAVSENNKVLGFLREKGCD
YCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAALLADKPVSQSDLNKIEWVM
QYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYASNDTAPEHRNEPVQPIPQKL
PTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGVDGRKTSIGVGGAVGPINAPTVF
NSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSWDEIIAKLEKDPQLKTQFLEVYPQG
FSGENITDAIAEFEKTLITPDSPFDKWLRGDENALTAQQKKGYQLFKDNKCATCHGGIIL
GGRSFEPLGLKKDFNFGEITAADIGRMNVTKEERDKLRQKVPGLRNVALTAPYFHRGDVP
TLDGAVKLMLRYQVGKELPQEDVDDIVAFLHSLNGVYTPYMQDKQ

17/01/2012 16:44:43 : INFO  : Checked sequence
17/01/2012 16:44:47 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 16:44:49 : INFO  : PSI-BLAST 3 iterations
17/01/2012 16:47:26 : INFO  : PSI-BLAST 5 iterations
17/01/2012 16:49:40 : INFO  : Finished PSI-BLAST
17/01/2012 16:49:43 : INFO  : Running Buildali to generate a3m file
17/01/2012 17:01:32 : INFO  : Converting to HMM
17/01/2012 17:01:37 : INFO  : Calibrating HMM
17/01/2012 17:02:00 : INFO  : Searching HMM database
17/01/2012 17:11:28 : INFO  : Finished buildali
17/01/2012 17:11:31 : INFO  : Predicting secondary structure
17/01/2012 17:11:42 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 17:11:45 : INFO  : Predicting Disordered regions
17/01/2012 17:11:51 : INFO  : Predicted Disorder (Disopred)
17/01/2012 17:11:54 : INFO  : Running memsat_svm check
17/01/2012 17:15:47 : INFO  : Running memsat_svm full
17/01/2012 17:27:36 : INFO  : Predicted Transmembrane (memsat_svm) ID '9df9369f98793b01'
17/01/2012 17:27:38 : INFO  : Initialising fold library search
17/01/2012 17:27:43 : INFO  : Initialised search input
17/01/2012 17:27:47 : INFO  : Building Ensemble models
17/01/2012 17:27:52 : INFO  : Building hh.c2vhdB_.model.1.pdb
17/01/2012 17:28:13 : INFO  : Building hh.c3o5cA_.model.2.pdb
17/01/2012 17:28:32 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9df9369f98793b01/hh.c3o5cA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9df9369f98793b01/c3o5cA_.2.pdb
17/01/2012 17:28:39 : INFO  : Building hh.c1iqcB_.model.3.pdb
17/01/2012 17:29:00 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9df9369f98793b01/hh.c1iqcB_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9df9369f98793b01/c1iqcB_.3.pdb
17/01/2012 17:29:06 : INFO  : Building hh.c2c1uB_.model.4.pdb
17/01/2012 17:29:25 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9df9369f98793b01/hh.c2c1uB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9df9369f98793b01/c2c1uB_.4.pdb
17/01/2012 17:29:31 : INFO  : Building hh.c1nmlA_.model.5.pdb
17/01/2012 17:29:51 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9df9369f98793b01/hh.c1nmlA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9df9369f98793b01/c1nmlA_.5.pdb
17/01/2012 17:29:57 : INFO  : Building hh.c3hq7A_.model.6.pdb
17/01/2012 17:30:16 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9df9369f98793b01/hh.c3hq7A_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9df9369f98793b01/c3hq7A_.7.pdb
17/01/2012 17:30:22 : INFO  : Building hh.c2xtsD_.model.7.pdb
17/01/2012 17:30:41 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9df9369f98793b01/hh.c2xtsD_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9df9369f98793b01/c2xtsD_.39.pdb
17/01/2012 17:30:47 : INFO  : Building hh.c3o0rC_.model.8.pdb
17/01/2012 17:31:05 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/9df9369f98793b01/hh.c3o0rC_.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/9df9369f98793b01/c3o0rC_.41.pdb
17/01/2012 17:31:11 : INFO  : Building c2vhdB_.1.pdb
17/01/2012 17:31:33 : INFO  : Building c3o5cA_.2.pdb
17/01/2012 17:31:55 : INFO  : Building c1iqcB_.3.pdb
17/01/2012 17:32:17 : INFO  : Building c2c1uB_.4.pdb
17/01/2012 17:32:40 : INFO  : Building c1nmlA_.5.pdb
17/01/2012 17:33:03 : INFO  : Building c3l4oB_.6.pdb
17/01/2012 17:33:24 : INFO  : Building c3hq7A_.7.pdb
17/01/2012 17:33:47 : INFO  : Building c1zzhA_.8.pdb
17/01/2012 17:34:09 : INFO  : Building d1iqca2.9.pdb
17/01/2012 17:34:32 : INFO  : Building d1eb7a2.10.pdb
17/01/2012 17:34:53 : INFO  : Building d1nmla1.11.pdb
17/01/2012 17:35:17 : INFO  : Building d1iqca1.12.pdb
17/01/2012 17:35:42 : INFO  : Building d1eb7a1.13.pdb
17/01/2012 17:36:05 : INFO  : Building d1nmla2.14.pdb
17/01/2012 17:36:28 : INFO  : Building c3oa8A_.15.pdb
17/01/2012 17:36:52 : INFO  : Building c1h32A_.16.pdb
17/01/2012 17:37:16 : INFO  : Building c2c1dC_.17.pdb
17/01/2012 17:37:40 : INFO  : Building c3mk7F_.18.pdb
17/01/2012 17:38:03 : INFO  : Building d1wejf_.19.pdb
17/01/2012 17:38:26 : INFO  : Building d1j3sa_.20.pdb
17/01/2012 17:42:04 : INFO  : Finished HH model building
17/01/2012 17:42:07 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 17:43:29 : INFO  : html domain output complete ID '9df9369f98793b01'
17/01/2012 18:38:23 : INFO  : Run end  : Tue Jan 17 18:38:21 GMT 2012
