Phyre 2 alignment of P37197 with c1u5tB_

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Job Description | P37197
Confidence | 23.16% | Date | Thu Jan 5 11:55:03 GMT 2012
Rank | 176 | Aligned Residues | 43
% Identity | 7% | Template | c1u5tB_
PDB info | PDB header:transport protein | Chain: B: PDB Molecule:defective in vacuolar protein sorting; vps36p; | PDBTitle: structure of the escrt-ii endosomal trafficking complex
Resolution | 3.60 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 415 | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . |  |  | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | H | R | G | D | V | P | T | L | D | G | A | V | K | L | M | L | R | Y | Q | . | . | V | G | K | E | L | P | Q | E | D | V | D | D | I | V | A | F | L | H | S | L | N | G | V | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | T | N | Y | M | I | I | T | L | V | D | L | Y | A | M | Y | N | K | S | M | R | I | G | T | G | L | I | S | P | M | E | M | R | E | A | C | E | R | F | E | H | L | G | L | N | E
Template Known Secondary structure |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  | T | T | T | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | G | G | G | T |  |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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