Phyre 2 Results for P37197

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Email | l.a.kelley@imperial.ac.uk
Description | P37197
Date | Thu Jan 5 11:55:03 GMT 2012
Unique Job ID | 9df9369f98793b01

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2vhdB_
Top template information
PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form
Confidence and coverage
Confidence: | 100.0% | Coverage: | 65%
303 residues ( 65% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
445 residues ( 96%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | M | V | S | R | I | T | A | I | G | L | A | G | V | A | I | C | Y | L | G | L | S | G | Y | V | W | Y | H | D | N | K | R | S | K | Q | A | D | V | Q | A | S | A | V | S | E | N | N | K | V | L | G | F | L | R | E | K | G | C | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | Y | C | H | T | P | S | A | E | L | P | A | Y | Y | Y | I | P | G | A | K | Q | L | M | D | Y | D | I | K | L | G | Y | K | S | F | N | L | E | A | V | R | A | A | L | L | A | D | K | P | V | S | Q | S | D | L | N | K | I | E | W | V | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | Q | Y | E | T | M | P | P | T | R | Y | T | A | L | H | W | A | G | K | V | S | D | E | E | R | A | E | I | L | A | W | I | A | K | Q | R | A | E | Y | Y | A | S | N | D | T | A | P | E | H | R | N | E | P | V | Q | P | I | P | Q | K | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? |  | ? | ? | ? | ? |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? | ? | ? |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  | ? |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | P | T | D | A | Q | K | V | A | L | G | F | A | L | Y | H | D | P | R | L | S | A | D | S | T | I | S | C | A | H | C | H | A | L | N | A | G | G | V | D | G | R | K | T | S | I | G | V | G | G | A | V | G | P | I | N | A | P | T | V | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? |  |  | ? |  |  |  | ? |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | N | S | V | F | N | V | E | Q | F | W | D | G | R | A | A | T | L | Q | D | Q | A | G | G | P | P | L | N | P | I | E | M | A | S | K | S | W | D | E | I | I | A | K | L | E | K | D | P | Q | L | K | T | Q | F | L | E | V | Y | P | Q | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | F | S | G | E | N | I | T | D | A | I | A | E | F | E | K | T | L | I | T | P | D | S | P | F | D | K | W | L | R | G | D | E | N | A | L | T | A | Q | Q | K | K | G | Y | Q | L | F | K | D | N | K | C | A | T | C | H | G | G | I | I | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | G | G | R | S | F | E | P | L | G | L | K | K | D | F | N | F | G | E | I | T | A | A | D | I | G | R | M | N | V | T | K | E | E | R | D | K | L | R | Q | K | V | P | G | L | R | N | V | A | L | T | A | P | Y | F | H | R | G | D | V | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | .
Sequence |  | T | L | D | G | A | V | K | L | M | L | R | Y | Q | V | G | K | E | L | P | Q | E | D | V | D | D | I | V | A | F | L | H | S | L | N | G | V | Y | T | P | Y | M | Q | D | K | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2vhdB_ |

### PDB 2vhd chain B

Region: 159 - 462
Aligned: 303
Modelled: 304
Confidence: 100.0%
Identity: 44%
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form

Phyre2
2 |
| c3o5cA_ |

### PDB 3o5c chain A

Region: 171 - 462
Aligned: 288
Modelled: 292
Confidence: 100.0%
Identity: 44%
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis

Phyre2
3 |
| c1iqcB_ |

### PDB 1iqc chain B

Region: 169 - 462
Aligned: 290
Modelled: 294
Confidence: 100.0%
Identity: 47%
PDB header:oxidoreductase
Chain: B: PDB Molecule:di-heme peroxidase;
PDBTitle: crystal structure of di-heme peroxidase from nitrosomonas europaea

Phyre2
4 |
| c2c1uB_ |

### PDB 2c1u chain B

Region: 164 - 460
Aligned: 288
Modelled: 297
Confidence: 100.0%
Identity: 42%
PDB header:oxidoreductase
Chain: B: PDB Molecule:di-haem cytochrome c peroxidase;
PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form

Phyre2
5 |
| c1nmlA_ |

### PDB 1nml chain A

Region: 175 - 462
Aligned: 277
Modelled: 288
Confidence: 100.0%
Identity: 44%
PDB header:oxidoreductase
Chain: A: PDB Molecule:di-haem cytochrome c peroxidase;
PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0)

Phyre2
6 |
| c3l4oB_ |

### PDB 3l4o chain B

Region: 183 - 463
Aligned: 280
Modelled: 281
Confidence: 100.0%
Identity: 36%
PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:methylamine utilization protein maug;
PDBTitle: crystal structure of the maug/pre-methylamine dehydrogenase complex2 after treatment with hydrogen peroxide

Phyre2
7 |
| c3hq7A_ |

### PDB 3hq7 chain A

Region: 175 - 461
Aligned: 264
Modelled: 287
Confidence: 100.0%
Identity: 44%
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant

Phyre2
8 |
| c1zzhA_ |

### PDB 1zzh chain A

Region: 173 - 462
Aligned: 270
Modelled: 290
Confidence: 100.0%
Identity: 43%
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c peroxidase;
PDBTitle: structure of the fully oxidized di-heme cytochrome c2 peroxidase from r. capsulatus

Phyre2
9 |
| d1iqca2 |

### PDB 1iqc chain A domain 2

Region: 319 - 462
Aligned: 141
Modelled: 144
Confidence: 100.0%
Identity: 45%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Di-heme cytochrome c peroxidase

Phyre2
10 |
| d1eb7a2 |

### PDB 1eb7 chain A domain 2

Region: 319 - 461
Aligned: 137
Modelled: 143
Confidence: 100.0%
Identity: 53%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Di-heme cytochrome c peroxidase

Phyre2
11 |
| d1nmla1 |

### PDB 1nml chain A domain 1

Region: 151 - 320
Aligned: 161
Modelled: 170
Confidence: 100.0%
Identity: 41%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Di-heme cytochrome c peroxidase

Phyre2
12 |
| d1iqca1 |

### PDB 1iqc chain A domain 1

Region: 169 - 318
Aligned: 149
Modelled: 150
Confidence: 100.0%
Identity: 48%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Di-heme cytochrome c peroxidase

Phyre2
13 |
| d1eb7a1 |

### PDB 1eb7 chain A domain 1

Region: 167 - 318
Aligned: 151
Modelled: 152
Confidence: 100.0%
Identity: 40%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Di-heme cytochrome c peroxidase

Phyre2
14 |
| d1nmla2 |

### PDB 1nml chain A domain 2

Region: 321 - 461
Aligned: 131
Modelled: 141
Confidence: 100.0%
Identity: 45%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: Di-heme cytochrome c peroxidase

Phyre2
15 |
| c3oa8A_ |

### PDB 3oa8 chain A

Region: 179 - 458
Aligned: 212
Modelled: 219
Confidence: 99.9%
Identity: 14%
PDB header:heme-binding protein/heme-binding protei
Chain: A: PDB Molecule:soxa;
PDBTitle: diheme soxax

Phyre2
16 |
| c1h32A_ |

### PDB 1h32 chain A

Region: 186 - 454
Aligned: 185
Modelled: 210
Confidence: 99.5%
Identity: 17%
PDB header:electron transfer
Chain: A: PDB Molecule:diheme cytochrome c;
PDBTitle: reduced soxax complex from rhodovulum sulfidophilum

Phyre2
17 |
| c2c1dC_ |

### PDB 2c1d chain C

Region: 186 - 454
Aligned: 179
Modelled: 200
Confidence: 99.4%
Identity: 16%
PDB header:oxidoreductase
Chain: C: PDB Molecule:soxa;
PDBTitle: crystal structure of soxxa from p. pantotrophus

Phyre2
18 |
| c3mk7F_ |

### PDB 3mk7 chain F

Region: 150 - 454
Aligned: 205
Modelled: 227
Confidence: 98.9%
Identity: 21%
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase

Phyre2
19 |
| d1wejf_ |

### PDB 1wej chain F

Region: 339 - 456
Aligned: 93
Modelled: 94
Confidence: 98.9%
Identity: 17%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2
20 |
| d1j3sa_ |

### PDB 1j3s chain A

Region: 339 - 456
Aligned: 93
Modelled: 94
Confidence: 98.9%
Identity: 19%
Fold: Cytochrome c
Superfamily: Cytochrome c
Family: monodomain cytochrome c

Phyre2
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| c2xtsD_ |

### PDB 2xts chain D

Region: 49 - 220
Aligned: 142
Modelled: 142
Confidence: 98.3%
Identity: 17%
PDB header:oxidoreductase/electron transport
Chain: D: PDB Molecule:cytochrome;
PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus

Phyre2
40 |
41 |
| c3o0rC_ |

### PDB 3o0r chain C

Region: 2 - 167
Aligned: 138
Modelled: 138
Confidence: 98.3%
Identity: 13%
PDB header:immune system/oxidoreductase
Chain: C: PDB Molecule:nitric oxide reductase subunit c;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2vhdB_ |
|  | 100.0 | 44 | PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from pseudomonas aeruginosa - mixed valence form
2 | c3o5cA_ |
|  | 100.0 | 44 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis
3 | c1iqcB_ |
|  | 100.0 | 47 | PDB header:oxidoreductase Chain: B: PDB Molecule:di-heme peroxidase; PDBTitle: crystal structure of di-heme peroxidase from nitrosomonas europaea
4 | c2c1uB_ |
|  | 100.0 | 42 | PDB header:oxidoreductase Chain: B: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form
5 | c1nmlA_ |
|  | 100.0 | 44 | PDB header:oxidoreductase Chain: A: PDB Molecule:di-haem cytochrome c peroxidase; PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0)
6 | c3l4oB_ |
|  | 100.0 | 36 | PDB header:oxidoreductase/electron transport Chain: B: PDB Molecule:methylamine utilization protein maug; PDBTitle: crystal structure of the maug/pre-methylamine dehydrogenase complex2 after treatment with hydrogen peroxide
7 | c3hq7A_ |
|  | 100.0 | 44 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c551 peroxidase; PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant
8 | c1zzhA_ |
|  | 100.0 | 43 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c peroxidase; PDBTitle: structure of the fully oxidized di-heme cytochrome c2 peroxidase from r. capsulatus
9 | d1iqca2 |
|  | 100.0 | 45 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase
10 | d1eb7a2 |
|  | 100.0 | 53 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase
11 | d1nmla1 |
|  | 100.0 | 41 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase
12 | d1iqca1 |
|  | 100.0 | 48 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase
13 | d1eb7a1 |
|  | 100.0 | 40 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase
14 | d1nmla2 |
|  | 100.0 | 45 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c peroxidase
15 | c3oa8A_ |
|  | 99.9 | 14 | PDB header:heme-binding protein/heme-binding protei Chain: A: PDB Molecule:soxa; PDBTitle: diheme soxax
16 | c1h32A_ |
|  | 99.5 | 17 | PDB header:electron transfer Chain: A: PDB Molecule:diheme cytochrome c; PDBTitle: reduced soxax complex from rhodovulum sulfidophilum
17 | c2c1dC_ |
|  | 99.4 | 16 | PDB header:oxidoreductase Chain: C: PDB Molecule:soxa; PDBTitle: crystal structure of soxxa from p. pantotrophus
18 | c3mk7F_ |
|  | 98.9 | 21 | PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase
19 | d1wejf_ |
|  | 98.9 | 17 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
20 | d1j3sa_ |
|  | 98.9 | 19 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
21 | d1lfma_ |
| not modelled | 98.8 | 23 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
22 | d1co6a_ |
| not modelled | 98.7 | 17 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
23 | d1h32b_ |
| not modelled | 98.6 | 16 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
24 | c1fcdD_ |
| not modelled | 98.6 | 24 | PDB header:electron transport(flavocytochrome) Chain: D: PDB Molecule:flavocytochrome c sulfide dehydrogenase PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution
25 | d1cxca_ |
| not modelled | 98.6 | 21 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
26 | d1cota_ |
| not modelled | 98.6 | 16 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
27 | d3c2ca_ |
| not modelled | 98.6 | 15 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
28 | d1ccra_ |
| not modelled | 98.6 | 15 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
29 | d1yeba_ |
| not modelled | 98.6 | 18 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
30 | d1i8oa_ |
| not modelled | 98.6 | 19 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
31 | d1ycca_ |
| not modelled | 98.6 | 18 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
32 | c2w9kA_ |
| not modelled | 98.5 | 23 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crithidia fasciculata cytochrome c
33 | d1jdla_ |
| not modelled | 98.5 | 21 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
34 | d1hroa_ |
| not modelled | 98.5 | 22 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
35 | d1ytca_ |
| not modelled | 98.5 | 18 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
36 | d1ql3a_ |
| not modelled | 98.4 | 20 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
37 | c3mk7B_ |
| not modelled | 98.4 | 23 | PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit o; PDBTitle: the structure of cbb3 cytochrome oxidase
38 | c2c1dB_ |
| not modelled | 98.3 | 21 | PDB header:oxidoreductase Chain: B: PDB Molecule:soxx; PDBTitle: crystal structure of soxxa from p. pantotrophus
39 | c2xtsD_ |
|  | 98.3 | 17 | PDB header:oxidoreductase/electron transport Chain: D: PDB Molecule:cytochrome; PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus
40 | c1w2lA_ |
| not modelled | 98.3 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome oxidase subunit ii; PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase
41 | c3o0rC_ |
|  | 98.3 | 13 | PDB header:immune system/oxidoreductase Chain: C: PDB Molecule:nitric oxide reductase subunit c; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
42 | c1m70D_ |
| not modelled | 98.3 | 19 | PDB header:electron transport Chain: D: PDB Molecule:cytochrome c4; PDBTitle: crystal structure of oxidized recombinant cytochrome c4 from2 pseudomonas stutzeri
43 | c3m97X_ |
| not modelled | 98.2 | 20 | PDB header:electron transport Chain: X: PDB Molecule:cytochrome c-552; PDBTitle: structure of the soluble domain of cytochrome c552 with its flexible2 linker segment from paracoccus denitrificans
44 | d2gc4d1 |
| not modelled | 98.1 | 20 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
45 | d2c8sa1 |
| not modelled | 98.1 | 27 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
46 | c3cp5A_ |
| not modelled | 98.1 | 27 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: cytochrome c from rhodothermus marinus
47 | d1vyda_ |
| not modelled | 98.1 | 25 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
48 | d1h32a2 |
| not modelled | 98.0 | 16 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c SoxA
49 | d1qn2a_ |
| not modelled | 98.0 | 19 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
50 | d351ca_ |
| not modelled | 98.0 | 20 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
51 | d1lmsa_ |
| not modelled | 98.0 | 15 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
52 | d1dvva_ |
| not modelled | 97.9 | 20 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
53 | c2d0wA_ |
| not modelled | 97.9 | 26 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome cl; PDBTitle: crystal structure of cytochrome cl from hyphomicrobium2 denitrificans
54 | d1fi3a_ |
| not modelled | 97.9 | 27 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
55 | d1m70a2 |
| not modelled | 97.8 | 19 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c
56 | c3dr0B_ |
| not modelled | 97.8 | 20 | PDB header:electron transport Chain: B: PDB Molecule:cytochrome c6; PDBTitle: structure of reduced cytochrome c6 from synechococcus sp.2 pcc 7002
57 | c2l4dA_ |
| not modelled | 97.8 | 13 | PDB header:electron transport Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c; PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida
58 | d1a56a_ |
| not modelled | 97.8 | 17 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
59 | d1wvec1 |
| not modelled | 97.8 | 25 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
60 | d1cora_ |
| not modelled | 97.7 | 25 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
61 | d1kb0a1 |
| not modelled | 97.7 | 29 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
62 | c2d0sA_ |
| not modelled | 97.7 | 30 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c; PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus
63 | d1c75a_ |
| not modelled | 97.7 | 19 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
64 | c1h1oA_ |
| not modelled | 97.7 | 22 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c-552; PDBTitle: acidithiobacillus ferrooxidans cytochrome c4 structure2 supports a complex-induced tuning of electron transfer
65 | d1ynra1 |
| not modelled | 97.7 | 26 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
66 | d1h1oa2 |
| not modelled | 97.7 | 19 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c
67 | d1ls9a_ |
| not modelled | 97.6 | 19 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
68 | d1c6ra_ |
| not modelled | 97.6 | 16 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
69 | d1qksa1 |
| not modelled | 97.6 | 31 | Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
70 | d1kx7a_ |
| not modelled | 97.6 | 22 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
71 | d1m70a1 |
| not modelled | 97.6 | 21 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c
72 | d1dvha_ |
| not modelled | 97.6 | 31 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
73 | c3dmiA_ |
| not modelled | 97.6 | 18 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c6; PDBTitle: crystallization and structural analysis of cytochrome c62 from the diatom phaeodactylum tricornutum at 1.5 a3 resolution
74 | d1fcdc2 |
| not modelled | 97.6 | 27 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c
75 | c2zxyA_ |
| not modelled | 97.5 | 25 | PDB header:oxygen binding, transport protein Chain: A: PDB Molecule:cytochrome c552; PDBTitle: crystal structure of cytochrome c555 from aquifex aeolicus
76 | d155ca_ |
| not modelled | 97.5 | 16 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
77 | d1c53a_ |
| not modelled | 97.5 | 27 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
78 | d1cc5a_ |
| not modelled | 97.5 | 18 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
79 | d1kv9a1 |
| not modelled | 97.5 | 23 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
80 | d1c52a_ |
| not modelled | 97.5 | 20 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
81 | d1e29a_ |
| not modelled | 97.5 | 22 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
82 | d1mz4a_ |
| not modelled | 97.5 | 18 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
83 | c2zzsW_ |
| not modelled | 97.5 | 21 | PDB header:electron transport Chain: W: PDB Molecule: PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633
84 | c2v07A_ |
| not modelled | 97.5 | 26 | PDB header:photosynthesis Chain: A: PDB Molecule:cytochrome c6; PDBTitle: structure of the arabidopsis thaliana cytochrome c6a v52q2 variant
85 | d1c6sa_ |
| not modelled | 97.5 | 18 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
86 | d1cnoa_ |
| not modelled | 97.4 | 25 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
87 | d1f1ca_ |
| not modelled | 97.4 | 18 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
88 | d1ctja_ |
| not modelled | 97.4 | 14 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
89 | d1hj3a1 |
| not modelled | 97.3 | 29 | Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
90 | c2zonG_ |
| not modelled | 97.3 | 21 | PDB header:oxidoreductase/electron transport Chain: G: PDB Molecule:cytochrome c551; PDBTitle: crystal structure of electron transfer complex of nitrite2 reductase with cytochrome c
91 | d1gdva_ |
| not modelled | 97.2 | 19 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
92 | c1p84D_ |
| not modelled | 97.1 | 24 | PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
93 | c3cu4A_ |
| not modelled | 97.1 | 27 | PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens
94 | d1fcdc1 |
| not modelled | 97.0 | 17 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c
95 | d1h32a1 |
| not modelled | 96.9 | 20 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Di-heme cytochrome c SoxA
96 | c1w5cT_ |
| not modelled | 96.9 | 9 | PDB header:photosynthesis Chain: T: PDB Molecule:cytochrome c-550; PDBTitle: photosystem ii from thermosynechococcus elongatus
97 | d1cyja_ |
| not modelled | 96.9 | 20 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
98 | d1dy7b1 |
| not modelled | 96.9 | 12 | Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
99 | d1ppjd1 |
| not modelled | 96.8 | 21 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Cytochrome bc1 domain
100 | d1nira1 |
| not modelled | 96.8 | 13 | Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
101 | d1h9xa1 |
| not modelled | 96.8 | 11 | Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
102 | d1hzua1 |
| not modelled | 96.7 | 13 | Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
103 | d1f1fa_ |
| not modelled | 96.6 | 13 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
104 | c2zooA_ |
| not modelled | 96.6 | 16 | PDB header:oxidoreductase Chain: A: PDB Molecule:probable nitrite reductase; PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125
105 | d1dw0a_ |
| not modelled | 96.6 | 24 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
106 | d1gksa_ |
| not modelled | 96.5 | 25 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
107 | d1e2rb1 |
| not modelled | 96.4 | 11 | Fold:Cytochrome c Superfamily:Cytochrome c Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
108 | c3oa8B_ |
| not modelled | 96.4 | 12 | PDB header:heme-binding protein/heme-binding protei Chain: B: PDB Molecule:soxx; PDBTitle: diheme soxax
109 | d1gu2a_ |
| not modelled | 96.3 | 21 | Fold:Cytochrome c Superfamily:Cytochrome c Family:monodomain cytochrome c
110 | c2bpbB_ |
| not modelled | 96.2 | 21 | PDB header:oxidoreductase Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; PDBTitle: sulfite dehydrogenase from starkeya novella
111 | c1nnoA_ |
| not modelled | 96.0 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:nitrite reductase; PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa
112 | c1pbyA_ |
| not modelled | 95.8 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda PDBTitle: structure of the phenylhydrazine adduct of the2 quinohemoprotein amine dehydrogenase from paracoccus3 denitrificans at 1.7 a resolution
113 | c1jmxA_ |
| not modelled | 95.7 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:amine dehydrogenase; PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida
114 | c1kb0A_ |
| not modelled | 95.6 | 31 | PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase; PDBTitle: crystal structure of quinohemoprotein alcohol dehydrogenase from2 comamonas testosteroni
115 | c1kv9A_ |
| not modelled | 95.2 | 30 | PDB header:oxidoreductase Chain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase; PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5
116 | d1h1oa1 |
| not modelled | 95.2 | 11 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c
117 | d1pbya1 |
| not modelled | 95.1 | 38 | Fold:Cytochrome c Superfamily:Cytochrome c Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
118 | c1zrtD_ |
| not modelled | 94.9 | 28 | PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound
119 | c3cwbQ_ |
| not modelled | 94.7 | 32 | PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
120 | c2fynH_ |
| not modelled | 94.6 | 42 | PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction |

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0