Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP16917
DateWed Jan 25 15:20:40 GMT 2012
Unique Job ID9ae603be021ddcff

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2oy7A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:outer surface protein a;
PDBTitle: the crystal structure of ospa mutant
Confidence and coverage
Confidence: 96.5% Coverage: 19%
269 residues ( 19% of your sequence) have been modelled with 96.5% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
338 residues ( 24%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPTGVACSVCPGGVTSGHPVNPLLGAKVLPG
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Disorder  ?????????????????????????
??
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   .........70.........80.........90.........100.........110.........120
Sequence  ETDIALPGPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADIRLQLRDNTLILSDNGGRS
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   .........130.........140.........150.........160.........170.........180
Sequence  LYFEHLFPGEDGYSRSESLWLVRGGVAKLDEGHRLAALWQALPEELRLSPHRYLATNSPQ
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   .........190.........200.........210.........220.........230.........240
Sequence  GPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRTQTFHREAAGEFSGEITGVTDG
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   .........250.........260.........270.........280.........290.........300
Sequence  AWRHFRLVLTTQAQRAEEARQQAISGGTEPSAFPDTLPGYTEYGRDNGIRLSAVWLTHDP
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   .........310.........320.........330.........340.........350.........360
Sequence  EYPENLPAAPLVRYGWTPRGELAVVYDRSGKQVRSFTYDDKYRGRMVAHRHTGRPEIRYR
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   .........370.........380.........390.........400.........410.........420
Sequence  YDSDGRVTEQLNPAGLSYTYQYEKDRITITDSLDRREVLHTQGEAGLKRVVKKEHADGSV
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   .........430.........440.........450.........460.........470.........480
Sequence  TQSQFDAVGRLRAQTDAAGRTTEYSPDVVTGLITRITTPDGRASAFYYNHHNQLTSATGP
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   .........490.........500.........510.........520.........530.........540
Sequence  DGLELRREYDELGRLIQETAPDGDITRYRYDNPHSDLPCATEDATGSRKTMTWSRYGQLL
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   .........550.........560.........570.........580.........590.........600
Sequence  SFTDCSGYVTRYDHDRFGQMTAVHREEGLSQYRAYDSRGQLIAVKDTQGHETRYEYNIAG
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   .........610.........620.........630.........640.........650.........660
Sequence  DLTAVIAPDGSRNGTQYDAWGKAVRTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDV
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   .........670.........680.........690.........700.........710.........720
Sequence  LDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRLTHRTVKGETAERWQY
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   .........730.........740.........750.........760.........770.........780
Sequence  DERGWLTDISHISEGHRVAVHYRYDEKGRLTGERQTVHHPQTEALLWQHETRHAYNAQGL
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   .........790.........800.........810.........820.........830.........840
Sequence  ANRCIPDSLPAVEWLTYGSGYLAGMKLGDTPLVEYTRDRLHRETLRSFGRYELTTAYTPA
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   .........850.........860.........870.........880.........890.........900
Sequence  GQLQSQHLNSLLSDRDYTWNDNGELIRISSPRQTRSYSYSTTGRLTGVHTTAANLDIRIP
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   .........910.........920.........930.........940.........950.........960
Sequence  YATDPAGNRLPDPELHPDSTLSMWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTD
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  DERTHRYHYDSQHRLVHYTRTQYEEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSR
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  KPQVTWYGWDGDRLTTIQNDRSRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADALQQ
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  SGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPA
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  RKIHLYHCDHRGLPLALISTEGATAWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEES
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  GLYYNRHRYYDPLQGRYITQDPIGLKGGWNLYGYQLNPISDIDPLGLSMWEDAKSGACTN
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  GLCGTLSAMIGPDKFDSIDSTAYDALNKINSQSICEDKEFAGLICKDNSGRYFSTAPNRG
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?

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   .........1330.........1340.........1350.........1360.........1370.........1380
Sequence  ERKGSYPFNSPCPNGTEKVSAYHTHGADSHGEYWDEIFSGKDEKIVKSKDNNIKSFYLGT
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   .........1390.........1400.........1410.
Sequence  PSGNFKAIDNHGKEITNRKGLPNVCRVHGNM
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???????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2oy7 chain A

3D model

Region: 385 - 662
Aligned: 269
Modelled: 278
Confidence: 96.5%
Identity: 15%
PDB header:membrane protein
Chain: A: PDB Molecule:outer surface protein a;
PDBTitle: the crystal structure of ospa mutant

Phyre2

PDB 1hng chain A domain 1

3D model

Region: 1279 - 1347
Aligned: 69
Modelled: 69
Confidence: 92.7%
Identity: 19%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: V set domains (antibody variable domain-like)

Phyre2

PDB 1hnf chain A domain 1

3D model

Region: 1303 - 1347
Aligned: 45
Modelled: 45
Confidence: 68.3%
Identity: 16%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Immunoglobulin
Family: V set domains (antibody variable domain-like)

Phyre2

PDB 1n7d chain A

3D model

Region: 472 - 688
Aligned: 217
Modelled: 217
Confidence: 67.7%
Identity: 12%
PDB header:lipid transport
Chain: A: PDB Molecule:low-density lipoprotein receptor;
PDBTitle: extracellular domain of the ldl receptor

Phyre2

PDB 1x3z chain A domain 1

3D model

Region: 1209 - 1242
Aligned: 33
Modelled: 34
Confidence: 39.1%
Identity: 18%
Fold: Cysteine proteinases
Superfamily: Cysteine proteinases
Family: Transglutaminase core

Phyre2

PDB 1osp chain O

3D model

Region: 366 - 558
Aligned: 173
Modelled: 180
Confidence: 33.3%
Identity: 16%
Fold: open-sided beta-meander
Superfamily: Outer surface protein
Family: Outer surface protein

Phyre2

PDB 2w8b chain B

3D model

Region: 347 - 599
Aligned: 243
Modelled: 253
Confidence: 31.4%
Identity: 12%
PDB header:protein transport/membrane protein
Chain: B: PDB Molecule:protein tolb;
PDBTitle: crystal structure of processed tolb in complex with pal

Phyre2

PDB 3e5z chain A

3D model

Region: 426 - 683
Aligned: 252
Modelled: 258
Confidence: 31.0%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative gluconolactonase;
PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130.

Phyre2

PDB 3rwx chain A

3D model

Region: 62 - 78
Aligned: 17
Modelled: 15
Confidence: 25.0%
Identity: 18%
PDB header:transport protein
Chain: A: PDB Molecule:hypothetical bacterial outer membrane protein;
PDBTitle: crystal structure of a hypothetical bacterial outer membrane protein2 (bf2706) from bacteroides fragilis nctc 9343 at 2.40 a resolution

Phyre2

PDB 2j44 chain A domain 2

3D model

Region: 1238 - 1299
Aligned: 61
Modelled: 62
Confidence: 23.8%
Identity: 18%
Fold: Prealbumin-like
Superfamily: Starch-binding domain-like
Family: PUD-like

Phyre2

PDB 2ivz chain D

3D model

Region: 385 - 626
Aligned: 238
Modelled: 242
Confidence: 22.0%
Identity: 11%
PDB header:protein transport/hydrolase
Chain: D: PDB Molecule:protein tolb;
PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain

Phyre2

PDB 2f4m chain A domain 1

3D model

Region: 1209 - 1242
Aligned: 34
Modelled: 34
Confidence: 21.0%
Identity: 26%
Fold: Cysteine proteinases
Superfamily: Cysteine proteinases
Family: Transglutaminase core

Phyre2

PDB 3esw chain A

3D model

Region: 1209 - 1242
Aligned: 33
Modelled: 34
Confidence: 20.8%
Identity: 21%
PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.

Phyre2

PDB 1ssk chain A

3D model

Region: 1347 - 1410
Aligned: 53
Modelled: 64
Confidence: 20.3%
Identity: 21%
Fold: Coronavirus RNA-binding domain
Superfamily: Coronavirus RNA-binding domain
Family: Coronavirus RNA-binding domain

Phyre2

PDB 3msw chain A

3D model

Region: 926 - 995
Aligned: 46
Modelled: 54
Confidence: 20.3%
Identity: 20%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function (bf3112) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution

Phyre2

PDB 1j5q chain B

3D model

Region: 1189 - 1246
Aligned: 50
Modelled: 58
Confidence: 20.0%
Identity: 28%
PDB header:viral protein
Chain: B: PDB Molecule:major capsid protein;
PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus.

Phyre2

PDB 2j43 chain A domain 1

3D model

Region: 1243 - 1299
Aligned: 56
Modelled: 57
Confidence: 17.2%
Identity: 16%
Fold: Prealbumin-like
Superfamily: Starch-binding domain-like
Family: PUD-like

Phyre2

PDB 2j44 chain A domain 1

3D model

Region: 1243 - 1299
Aligned: 55
Modelled: 57
Confidence: 17.2%
Identity: 15%
Fold: Prealbumin-like
Superfamily: Starch-binding domain-like
Family: PUD-like

Phyre2

PDB 1ei5 chain A domain 1

3D model

Region: 1191 - 1209
Aligned: 19
Modelled: 19
Confidence: 15.5%
Identity: 32%
Fold: Streptavidin-like
Superfamily: D-aminopeptidase, middle and C-terminal domains
Family: D-aminopeptidase, middle and C-terminal domains

Phyre2

PDB 3k8h chain A

3D model

Region: 1314 - 1362
Aligned: 37
Modelled: 49
Confidence: 15.5%
Identity: 24%
PDB header:membrane protein
Chain: A: PDB Molecule:30klp;
PDBTitle: structure of crystal form i of tp0453

Phyre2
1

c2oy7A_
2

d1hnga1
3

d1hnfa1
4

c1n7dA_
5

d1x3za1
6

d1ospo_
7

c2w8bB_
8

c3e5zA_
9

c3rwxA_
10

d2j44a2
11

c2ivzD_
12

d2f4ma1
13

c3eswA_
14

d1sska_
15

c3mswA_
16

c1j5qB_
17

d2j43a1
18

d2j44a1
19

d1ei5a1
20

c3k8hA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2oy7A_



96.5 15 PDB header:membrane protein
Chain: A: PDB Molecule:outer surface protein a;
PDBTitle: the crystal structure of ospa mutant
2d1hnga1



92.7 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
3d1hnfa1



68.3 16 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
4c1n7dA_



67.7 12 PDB header:lipid transport
Chain: A: PDB Molecule:low-density lipoprotein receptor;
PDBTitle: extracellular domain of the ldl receptor
5d1x3za1



39.1 18 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
6d1ospo_



33.3 16 Fold:open-sided beta-meander
Superfamily:Outer surface protein
Family:Outer surface protein
7c2w8bB_



31.4 12 PDB header:protein transport/membrane protein
Chain: B: PDB Molecule:protein tolb;
PDBTitle: crystal structure of processed tolb in complex with pal
8c3e5zA_



31.0 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative gluconolactonase;
PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130.
9c3rwxA_



25.0 18 PDB header:transport protein
Chain: A: PDB Molecule:hypothetical bacterial outer membrane protein;
PDBTitle: crystal structure of a hypothetical bacterial outer membrane protein2 (bf2706) from bacteroides fragilis nctc 9343 at 2.40 a resolution
10d2j44a2



23.8 18 Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:PUD-like
11c2ivzD_



22.0 11 PDB header:protein transport/hydrolase
Chain: D: PDB Molecule:protein tolb;
PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain
12d2f4ma1



21.0 26 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
13c3eswA_



20.8 21 PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.
14d1sska_



20.3 21 Fold:Coronavirus RNA-binding domain
Superfamily:Coronavirus RNA-binding domain
Family:Coronavirus RNA-binding domain
15c3mswA_



20.3 20 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function (bf3112) from2 bacteroides fragilis nctc 9343 at 1.90 a resolution
16c1j5qB_



20.0 28 PDB header:viral protein
Chain: B: PDB Molecule:major capsid protein;
PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus.
17d2j43a1



17.2 16 Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:PUD-like
18d2j44a1



17.2 15 Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:PUD-like
19d1ei5a1



15.5 32 Fold:Streptavidin-like
Superfamily:D-aminopeptidase, middle and C-terminal domains
Family:D-aminopeptidase, middle and C-terminal domains
20c3k8hA_



15.5 24 PDB header:membrane protein
Chain: A: PDB Molecule:30klp;
PDBTitle: structure of crystal form i of tp0453
21c1t3dB_



not modelled 14.0 32 PDB header:transferase
Chain: B: PDB Molecule:serine acetyltransferase;
PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a
22c3hd4A_



not modelled 13.8 21 PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: mhv nucleocapsid protein ntd
23c3ilwA_



not modelled 13.7 24 PDB header:isomerase
Chain: A: PDB Molecule:dna gyrase subunit a;
PDBTitle: structure of dna gyrase subunit a n-terminal domain
24d1o5ua_



not modelled 13.6 8 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Hypothetical protein TM1112
25c2ksnA_



not modelled 13.1 20 PDB header:signaling protein
Chain: A: PDB Molecule:ubiquitin domain-containing protein 2;
PDBTitle: solution structure of the n-terminal domain of dc-ubp/ubtd2
26c2x12A_



not modelled 12.6 27 PDB header:cell adhesion
Chain: A: PDB Molecule:fimbriae-associated protein fap1;
PDBTitle: ph-induced modulation of streptococcus parasanguinis2 adhesion by fap1 fimbriae
27c3s88I_



not modelled 12.6 19 PDB header:immune system/viral protein
Chain: I: PDB Molecule:envelope glycoprotein;
PDBTitle: crystal structure of sudan ebolavirus glycoprotein (strain gulu) bound2 to 16f6
28c2kijA_



not modelled 12.1 25 PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the actuator domain of the copper-2 transporting atpase atp7a
29c3bmxB_



not modelled 12.1 42 PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized lipoprotein ybbd;
PDBTitle: beta-n-hexosaminidase (ybbd) from bacillus subtilis
30d1xata_



not modelled 11.8 26 Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:Galactoside acetyltransferase-like
31d1t3da_



not modelled 11.6 32 Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:Serine acetyltransferase
32d1pk6c_



not modelled 11.4 27 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
33c2wlgA_



not modelled 11.2 26 PDB header:transferase
Chain: A: PDB Molecule:polysialic acid o-acetyltransferase;
PDBTitle: crystallographic analysis of the polysialic acid o-2 acetyltransferase oatwy
34d1td6a_



not modelled 11.1 31 Fold:Hypothetical protein MPN330
Superfamily:Hypothetical protein MPN330
Family:Hypothetical protein MPN330
35c2j44A_



not modelled 11.1 15 PDB header:carbohydrate-binding module
Chain: A: PDB Molecule:alkaline amylopullulanase;
PDBTitle: alpha-glucan binding by a streptococcal virulence factor
36c2gopB_



not modelled 11.0 8 PDB header:hydrolase
Chain: B: PDB Molecule:trilobed protease;
PDBTitle: the beta-propeller domain of the trilobed protease from pyrococcus2 furiosus reveals an open velcro topology
37d1bcoa1



not modelled 11.0 17 Fold:mu transposase, C-terminal domain
Superfamily:mu transposase, C-terminal domain
Family:mu transposase, C-terminal domain
38c3ifzA_



not modelled 10.8 21 PDB header:isomerase
Chain: A: PDB Molecule:dna gyrase subunit a;
PDBTitle: crystal structure of the first part of the mycobacterium tuberculosis2 dna gyrase reaction core: the breakage and reunion domain at 2.7 a3 resolution
39d2bxxa1



not modelled 10.8 24 Fold:Coronavirus RNA-binding domain
Superfamily:Coronavirus RNA-binding domain
Family:Coronavirus RNA-binding domain
40c2ka3C_



not modelled 10.7 36 PDB header:structural protein
Chain: C: PDB Molecule:emilin-1;
PDBTitle: structure of emilin-1 c1q-like domain
41d1brwa3



not modelled 10.5 26 Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
42d2i52a1



not modelled 10.2 17 Fold:MK0786-like
Superfamily:MK0786-like
Family:MK0786-like
43d1bcga_



not modelled 10.2 38 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Long-chain scorpion toxins
44d1pk6b_



not modelled 10.1 27 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
45d1pk6a_



not modelled 10.1 27 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
46c3jroA_



not modelled 10.0 12 PDB header:transport protein, structural protein
Chain: A: PDB Molecule:fusion protein of protein transport protein sec13
PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice
47d1mr7a_



not modelled 9.7 24 Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:Galactoside acetyltransferase-like
48d2tpta3



not modelled 9.7 23 Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
49d2jdqd1



not modelled 9.5 20 Fold:PB2 C-terminal domain-like
Superfamily:PB2 C-terminal domain-like
Family:PB2 C-terminal domain-like
50d1f00i2



not modelled 9.5 38 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
51d1m3ya2



not modelled 9.4 39 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group II dsDNA viruses VP
Family:Major capsid protein vp54
52c3bgyA_



not modelled 9.4 20 PDB header:hydrolase, viral protein
Chain: A: PDB Molecule:polynucleotide 5'-triphosphatase;
PDBTitle: triclinic structure of mimivirus capping enzyme2 triphosphatase at 1.65 a
53c3fsbB_



not modelled 9.1 27 PDB header:transferase
Chain: B: PDB Molecule:qdtc;
PDBTitle: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-2 glucose n-acetyl transferase from thermoanaerobacterium3 thermosaccharolyticum in complex with coa and dtdp-3-amino-4 quinovose
54d1c3ha_



not modelled 9.0 31 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
55c3vh0C_



not modelled 9.0 9 PDB header:protein binding/dna
Chain: C: PDB Molecule:uncharacterized protein ynce;
PDBTitle: crystal structure of e. coli ynce complexed with dna
56c2hc8A_



not modelled 9.0 28 PDB header:transport protein
Chain: A: PDB Molecule:cation-transporting atpase, p-type;
PDBTitle: structure of the a. fulgidus copa a-domain
57d1krra_



not modelled 8.9 29 Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:Galactoside acetyltransferase-like
58c1gr3A_



not modelled 8.9 45 PDB header:collagen
Chain: A: PDB Molecule:collagen x;
PDBTitle: structure of the human collagen x nc1 trimer
59d1gr3a_



not modelled 8.9 45 Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
60d1j2za_



not modelled 8.7 19 Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:UDP N-acetylglucosamine acyltransferase
61c2xzmG_



not modelled 8.7 17 PDB header:ribosome
Chain: G: PDB Molecule:ribosomal protein s7 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
62c2iu9C_



not modelled 8.6 23 PDB header:transferase
Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine
PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii)
63d1jnpa_



not modelled 8.6 26 Fold:Oncogene products
Superfamily:Oncogene products
Family:Oncogene products
64c1m4xC_



not modelled 8.5 39 PDB header:virus
Chain: C: PDB Molecule:pbcv-1 virus capsid;
PDBTitle: pbcv-1 virus capsid, quasi-atomic model
65c2vtwF_



not modelled 8.4 32 PDB header:viral protein
Chain: F: PDB Molecule:fiber protein 2;
PDBTitle: structure of the c-terminal head domain of the fowl2 adenovirus type 1 short fibre
66d2geca1



not modelled 8.3 24 Fold:Coronavirus RNA-binding domain
Superfamily:Coronavirus RNA-binding domain
Family:Coronavirus RNA-binding domain
67c3di4A_



not modelled 8.3 25 PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein duf1989;
PDBTitle: crystal structure of a duf1989 family protein (spo0365) from2 silicibacter pomeroyi dss-3 at 1.60 a resolution
68d1azpa_



not modelled 7.9 17 Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:"Histone-like" proteins from archaea
69d1a1xa_



not modelled 7.9 21 Fold:Oncogene products
Superfamily:Oncogene products
Family:Oncogene products
70c3qx3B_



not modelled 7.9 34 PDB header:isomerase/dna/isomerase inhibitor
Chain: B: PDB Molecule:dna topoisomerase 2-beta;
PDBTitle: human topoisomerase iibeta in complex with dna and etoposide
71d1ufya_



not modelled 7.8 13 Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:Chorismate mutase
72d1f1sa3



not modelled 7.8 18 Fold:Hyaluronate lyase-like, C-terminal domain
Superfamily:Hyaluronate lyase-like, C-terminal domain
Family:Hyaluronate lyase-like, C-terminal domain
73c3eevC_



not modelled 7.8 26 PDB header:transferase
Chain: C: PDB Molecule:chloramphenicol acetyltransferase;
PDBTitle: crystal structure of chloramphenicol acetyltransferase vca0300 from2 vibrio cholerae o1 biovar eltor
74d2oqea2



not modelled 7.6 25 Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
75d2pyta1



not modelled 7.5 13 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:EutQ-like
76c3myxA_



not modelled 7.5 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pspto_0244;
PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution
77c3r0sA_



not modelled 7.4 18 PDB header:transferase
Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-
PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni
78c2kssA_



not modelled 7.3 31 PDB header:transcription regulator
Chain: A: PDB Molecule:carotenogenesis protein cars;
PDBTitle: nmr structure of myxococcus xanthus antirepressor cars1
79c2gacA_



not modelled 7.1 13 PDB header:hydrolase
Chain: A: PDB Molecule:glycosylasparaginase;
PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum
80d1jsga_



not modelled 7.1 26 Fold:Oncogene products
Superfamily:Oncogene products
Family:Oncogene products
81d1k8wa3



not modelled 7.0 27 Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
82d1w9pa2



not modelled 7.0 18 Fold:FKBP-like
Superfamily:Chitinase insertion domain
Family:Chitinase insertion domain
83c2j43A_



not modelled 7.0 16 PDB header:carbohydrate-binding module
Chain: A: PDB Molecule:spydx;
PDBTitle: alpha-glucan recognition by family 41 carbohydrate-binding2 modules from streptococcal virulence factors
84d1jofa_



not modelled 7.0 13 Fold:7-bladed beta-propeller
Superfamily:3-carboxy-cis,cis-mucoante lactonizing enzyme
Family:3-carboxy-cis,cis-mucoante lactonizing enzyme
85c2l92A_



not modelled 6.9 44 PDB header:dna binding protein
Chain: A: PDB Molecule:histone family protein nucleoid-structuring protein h-ns;
PDBTitle: solution structure of the c-terminal domain of h-ns like protein bv3f
86d1oi0a_



not modelled 6.9 15 Fold:Cytidine deaminase-like
Superfamily:JAB1/MPN domain
Family:JAB1/MPN domain
87c7apiB_



not modelled 6.9 6 PDB header:proteinase inhibitor
Chain: B: PDB Molecule:alpha 1-antitrypsin;
PDBTitle: the s variant of human alpha1-antitrypsin, structure and implications2 for function and metabolism
88c3i3aC_



not modelled 6.8 19 PDB header:transferase
Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-
PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa
89d2ax3a2



not modelled 6.8 14 Fold:YjeF N-terminal domain-like
Superfamily:YjeF N-terminal domain-like
Family:YjeF N-terminal domain-like
90c1jjoE_



not modelled 6.8 22 PDB header:signaling protein
Chain: E: PDB Molecule:neuroserpin;
PDBTitle: crystal structure of mouse neuroserpin (cleaved form)
91d1jiwi_



not modelled 6.8 15 Fold:Streptavidin-like
Superfamily:beta-Barrel protease inhibitors
Family:Metalloprotease inhibitor
92c1n0nB_



not modelled 6.7 57 PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase [mn];
PDBTitle: catalytic and structural effects of amino-acid substitution at his302 in human manganese superoxide dismutase
93c3jqyB_



not modelled 6.7 30 PDB header:transferase
Chain: B: PDB Molecule:polysialic acid o-acetyltransferase;
PDBTitle: crystal strucutre of the polysia specific acetyltransferase neuo
94c3izbF_



not modelled 6.7 14 PDB header:ribosome
Chain: F: PDB Molecule:40s ribosomal protein rps5 (s7p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
95c1y10C_



not modelled 6.7 32 PDB header:lyase
Chain: C: PDB Molecule:hypothetical protein rv1264/mt1302;
PDBTitle: mycobacterial adenylyl cyclase rv1264, holoenzyme, inhibited state
96c1p7gL_



not modelled 6.6 43 PDB header:oxidoreductase
Chain: L: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of superoxide dismutase from pyrobaculum2 aerophilum
97d1ulva3



not modelled 6.6 35 Fold:Immunoglobulin-like beta-sandwich
Superfamily:CBD9-like
Family:Glucodextranase, domain C
98c1gn4B_



not modelled 6.6 43 PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: h145e mutant of mycobacterium tuberculosis iron-superoxide2 dismutase.
99c3dr2A_



not modelled 6.6 15 PDB header:hydrolase
Chain: A: PDB Molecule:exported gluconolactonase;
PDBTitle: structural and functional analyses of xc5397 from2 xanthomonas campestris: a gluconolactonase important in3 glucose secondary metabolic pathways

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0