Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	E	F	P	V	V	L	V	I	N	C	G	S	S	S	I	K	F	S	V	L	D	A	S	D	C	E	V	L	M	S	G	I	A	D	G	I	N	S	E	N	A	F	L	S	V	N	G	G	E	P	A	P	L	A	H	H	S	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?																																													?	?	?		?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	G	A	L	K	A	I	A	F	E	L	E	K	R	N	L	N	D	S	V	A	L	I	G	H	R	I	A	H	G	G	S	I	F	T	E	S	A	I	I	T	D	E	V	I	D	N	I	R	R	V	S	P	L	A	P	L	H	N	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	N	L	S	G	I	E	S	A	Q	Q	L	F	P	G	V	T	Q	V	A	V	F	D	T	S	F	H	Q	T	M	A	P	E	A	Y	L	Y	G	L	P	W	K	Y	Y	E	E	L	G	V	R	R	Y	G	F	H	G	T	S	H	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Y	V	S	Q	R	A	H	S	L	L	N	L	A	E	D	D	S	G	L	V	V	A	H	L	G	N	G	A	S	I	C	A	V	R	N	G	Q	S	V	D	T	S	M	G	M	T	P	L	E	G	L	M	M	G	T	R	S	G	D	V
Secondary structure
SS confidence
Disorder												?																																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	F	G	A	M	S	W	V	A	S	Q	T	N	Q	S	L	G	D	L	E	R	V	V	N	K	E	S	G	L	L	G	I	S	G	L	S	S	D	L	R	V	L	E	K	A	W	H	E	G	H	E	R	A	Q	L	A	I	K	T	F
Secondary structure
SS confidence
Disorder																																																	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		V	H	R	I	A	R	H	I	A	G	H	A	A	S	L	R	R	L	D	G	I	I	F	T	G	G	I	G	E	N	S	S	L	I	R	R	L	V	M	E	H	L	A	V	L	G	L	E	I	D	T	E	M	N	N	R	S	N	S	C
Secondary structure
SS confidence
Disorder																																																								?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Sequence		G	E	R	I	V	S	S	E	N	A	R	V	I	C	A	V	I	P	T	N	E	E	K	M	I	A	L	D	A	I	H	L	G	K	V	N	A	P	A	E	F	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																													?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1x3n chain A Region: 4 - 397 Aligned: 394 Modelled: 394 Confidence: 100.0% Identity: 83% PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium Phyre2 PDB 2iir chain J Region: 5 - 395 Aligned: 391 Modelled: 391 Confidence: 100.0% Identity: 45% PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima Phyre2 PDB 1tuu chain A Region: 5 - 395 Aligned: 389 Modelled: 391 Confidence: 100.0% Identity: 40% PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: acetate kinase crystallized with atpgs Phyre2 PDB 3khy chain A Region: 4 - 393 Aligned: 382 Modelled: 389 Confidence: 100.0% Identity: 40% PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4 Phyre2 PDB 3p4i chain A Region: 5 - 394 Aligned: 374 Modelled: 376 Confidence: 100.0% Identity: 40% PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: crystal structure of acetate kinase from mycobacterium avium Phyre2 PDB 1saz chain A Region: 4 - 400 Aligned: 351 Modelled: 356 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:probable butyrate kinase 2; PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima Phyre2 PDB 2e1z chain A domain 2 Region: 193 - 397 Aligned: 205 Modelled: 205 Confidence: 100.0% Identity: 85% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Acetokinase-like Phyre2 PDB 1g99 chain A domain 2 Region: 193 - 395 Aligned: 201 Modelled: 203 Confidence: 100.0% Identity: 40% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Acetokinase-like Phyre2 PDB 2e1z chain A domain 1 Region: 4 - 191 Aligned: 188 Modelled: 188 Confidence: 100.0% Identity: 80% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Acetokinase-like Phyre2 PDB 1saz chain A domain 2 Region: 194 - 400 Aligned: 179 Modelled: 181 Confidence: 100.0% Identity: 26% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Acetokinase-like Phyre2 PDB 1g99 chain A domain 1 Region: 5 - 192 Aligned: 188 Modelled: 188 Confidence: 100.0% Identity: 40% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Acetokinase-like Phyre2 PDB 1saz chain A domain 1 Region: 4 - 193 Aligned: 170 Modelled: 189 Confidence: 100.0% Identity: 18% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Acetokinase-like Phyre2 PDB 3eo3 chain B Region: 5 - 342 Aligned: 247 Modelled: 253 Confidence: 98.9% Identity: 11% PDB header:isomerase, transferase Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n- PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein Phyre2 PDB 2aa4 chain A domain 2 Region: 198 - 345 Aligned: 134 Modelled: 143 Confidence: 98.9% Identity: 21% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: ROK Phyre2 PDB 2qm1 chain D Region: 3 - 343 Aligned: 275 Modelled: 291 Confidence: 98.8% Identity: 15% PDB header:transferase Chain: D: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase from enterococcus faecalis Phyre2 PDB 2ap1 chain A domain 1 Region: 198 - 343 Aligned: 131 Modelled: 146 Confidence: 98.7% Identity: 18% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: ROK Phyre2 PDB 1z6r chain A domain 3 Region: 198 - 343 Aligned: 141 Modelled: 146 Confidence: 98.5% Identity: 13% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: ROK Phyre2 PDB 2gup chain A domain 2 Region: 198 - 345 Aligned: 135 Modelled: 148 Confidence: 98.4% Identity: 20% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: ROK Phyre2 PDB 1z6r chain C Region: 161 - 343 Aligned: 177 Modelled: 183 Confidence: 98.4% Identity: 14% PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli Phyre2 PDB 2aa4 chain B Region: 5 - 345 Aligned: 259 Modelled: 272 Confidence: 98.4% Identity: 17% PDB header:transferase Chain: B: PDB Molecule:putative n-acetylmannosamine kinase; PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium Phyre2 1 c1x3nA_ 2 c2iirJ_ 3 c1tuuA_ 4 c3khyA_ 5 c3p4iA_ 6 c1sazA_ 7 d2e1za2 8 d1g99a2 9 d2e1za1 10 d1saza2 11 d1g99a1 12 d1saza1 13 c3eo3B_ 14 d2aa4a2 15 c2qm1D_ 16 d2ap1a1 17 d1z6ra3 18 d2gupa2 19 c1z6rC_ 20 c2aa4B_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1x3nA_ 100.0 83 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium 2 c2iirJ_ 100.0 45 PDB header:transferase Chain: J: PDB Molecule:acetate kinase; PDBTitle: acetate kinase from a hypothermophile thermotoga maritima 3 c1tuuA_ 100.0 40 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: acetate kinase crystallized with atpgs 4 c3khyA_ 100.0 40 PDB header:transferase Chain: A: PDB Molecule:propionate kinase; PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4 5 c3p4iA_ 100.0 40 PDB header:transferase Chain: A: PDB Molecule:acetate kinase; PDBTitle: crystal structure of acetate kinase from mycobacterium avium 6 c1sazA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:probable butyrate kinase 2; PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima 7 d2e1za2 100.0 85 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 8 d1g99a2 100.0 40 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 9 d2e1za1 100.0 80 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 10 d1saza2 100.0 26 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 11 d1g99a1 100.0 40 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 12 d1saza1 100.0 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like 13 c3eo3B_ 98.9 11 PDB header:isomerase, transferase Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n- PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein 14 d2aa4a2 98.9 21 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 15 c2qm1D_ 98.8 15 PDB header:transferase Chain: D: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase from enterococcus faecalis 16 d2ap1a1 98.7 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 17 d1z6ra3 98.5 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 18 d2gupa2 98.4 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 19 c1z6rC_ 98.4 14 PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli 20 c2aa4B_ 98.4 17 PDB header:transferase Chain: B: PDB Molecule:putative n-acetylmannosamine kinase; PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium 21 d1z05a2 not modelled 98.3 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 22 c1z05A_ not modelled 98.2 12 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. 23 c2ap1A_ not modelled 98.1 17 PDB header:transferase Chain: A: PDB Molecule:putative regulator protein; PDBTitle: crystal structure of the putative regulatory protein 24 c2e2pA_ not modelled 97.9 14 PDB header:transferase Chain: A: PDB Molecule:hexokinase; PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp 25 c2gupA_ not modelled 97.8 20 PDB header:transferase Chain: A: PDB Molecule:rok family protein; PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose 26 c3r8eA_ not modelled 97.8 15 PDB header:transferase Chain: A: PDB Molecule:hypothetical sugar kinase; PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution 27 c3vgkB_ not modelled 97.8 11 PDB header:transferase Chain: B: PDB Molecule:glucokinase; PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus 28 d2hoea2 not modelled 97.7 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 29 c3enoB_ not modelled 97.6 18 PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 30 c3mcpA_ not modelled 97.5 17 PDB header:transferase Chain: A: PDB Molecule:glucokinase; PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution 31 d1q18a2 not modelled 97.4 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 32 c2hoeA_ not modelled 97.3 15 PDB header:transferase Chain: A: PDB Molecule:n-acetylglucosamine kinase; PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution 33 d1huxa_ not modelled 97.3 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 34 d1sz2a1 not modelled 97.3 11 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glucokinase 35 c1xc3A_ not modelled 97.0 13 PDB header:transferase Chain: A: PDB Molecule:putative fructokinase; PDBTitle: structure of a putative fructokinase from bacillus subtilis 36 d2ewsa1 not modelled 96.7 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 37 c3htvA_ not modelled 96.6 20 PDB header:transferase Chain: A: PDB Molecule:d-allose kinase; PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution 38 c2ch5D_ not modelled 96.4 14 PDB header:transferase Chain: D: PDB Molecule:nagk protein; PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine 39 d1xc3a2 not modelled 96.1 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 40 c3gbtA_ not modelled 95.5 14 PDB header:transferase Chain: A: PDB Molecule:gluconate kinase; PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus 41 c2q2rA_ not modelled 95.2 19 PDB header:transferase Chain: A: PDB Molecule:glucokinase 1, putative; PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp 42 c3hz6A_ not modelled 94.8 15 PDB header:transferase Chain: A: PDB Molecule:xylulokinase; PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum 43 c3ifrB_ not modelled 94.0 15 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum 44 c2w40C_ not modelled 93.7 13 PDB header:transferase Chain: C: PDB Molecule:glycerol kinase, putative; PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol 45 c2ivoC_ not modelled 93.1 17 PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein 46 c1glbG_ not modelled 92.6 17 PDB header:phosphotransferase Chain: G: PDB Molecule:glycerol kinase; PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase 47 c2nlxA_ not modelled 92.4 17 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: crystal structure of the apo e. coli xylulose kinase 48 c3jvpA_ not modelled 92.3 21 PDB header:transferase Chain: A: PDB Molecule:ribulokinase; PDBTitle: crystal structure of ribulokinase from bacillus halodurans 49 c1zc6A_ not modelled 92.0 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:probable n-acetylglucosamine kinase; PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23. 50 c2d4wA_ not modelled 91.8 21 PDB header:transferase Chain: A: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060 51 d2i7pa1 not modelled 91.4 20 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 52 c2cgkB_ not modelled 90.9 16 PDB header:transferase Chain: B: PDB Molecule:l-rhamnulose kinase; PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation. 53 d2ch5a1 not modelled 90.9 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 54 c3bf1C_ not modelled 90.6 17 PDB header:transferase Chain: C: PDB Molecule:type iii pantothenate kinase; PDBTitle: type iii pantothenate kinase from thermotoga maritima2 complexed with pantothenate and adp 55 c2dpnB_ not modelled 90.6 15 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8 56 c3ezwD_ not modelled 90.5 17 PDB header:transferase Chain: D: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices 57 c3flcX_ not modelled 90.5 18 PDB header:transferase Chain: X: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol 58 d2p3ra1 not modelled 90.4 17 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 59 c3gg4B_ not modelled 90.4 12 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis 60 c1zxoB_ not modelled 90.3 15 PDB header:unknown function Chain: B: PDB Molecule:conserved hypothetical protein q8a1p1; PDBTitle: x-ray crystal structure of protein q8a1p1 from bacteroides2 thetaiotaomicron. northeast structural genomics consortium3 target btr25. 61 c3i8bA_ not modelled 90.1 22 PDB header:transferase Chain: A: PDB Molecule:xylulose kinase; PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis 62 c3g25B_ not modelled 90.0 17 PDB header:transferase Chain: B: PDB Molecule:glycerol kinase; PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol. 63 c2zf5O_ not modelled 89.8 18 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon 64 c1woqB_ not modelled 87.9 18 PDB header:transferase Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase; PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution 65 d2f9wa2 not modelled 86.5 31 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:CoaX-like 66 c2ychA_ not modelled 86.1 11 PDB header:cell cycle Chain: A: PDB Molecule:competence protein pilm; PDBTitle: pilm-piln type iv pilus biogenesis complex 67 c3h6eB_ not modelled 86.0 18 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans 68 d3bexa1 not modelled 84.8 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:CoaX-like 69 c3hi0B_ not modelled 82.6 18 PDB header:hydrolase Chain: B: PDB Molecule:putative exopolyphosphatase; PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution 70 d1r59o2 not modelled 82.6 10 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 71 c3lm2B_ not modelled 82.3 15 PDB header:transferase Chain: B: PDB Molecule:putative kinase; PDBTitle: crystal structure of putative kinase. (17743352) from agrobacterium2 tumefaciens str. c58 (dupont) at 1.70 a resolution 72 c2c5sA_ not modelled 81.0 22 PDB header:rna-binding protein Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii; PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain 73 c3h1qB_ not modelled 80.7 19 PDB header:structural protein Chain: B: PDB Molecule:ethanolamine utilization protein eutj; PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans 74 c2h3gX_ not modelled 80.5 11 PDB header:biosynthetic protein Chain: X: PDB Molecule:biosynthetic protein; PDBTitle: structure of the type iii pantothenate kinase (coax) from bacillus2 anthracis 75 c3djcA_ not modelled 78.6 26 PDB header:transferase Chain: A: PDB Molecule:type iii pantothenate kinase; PDBTitle: crystal structure of pantothenate kinase from legionella pneumophila 76 c1zbsA_ not modelled 77.8 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg1100; PDBTitle: crystal structure of the putative n-acetylglucosamine kinase (pg1100)2 from porphyromonas gingivalis, northeast structural genomics target3 pgr18 77 d1t6ca1 not modelled 76.9 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Ppx/GppA phosphatase 78 d2i7na2 not modelled 76.8 19 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Fumble-like 79 d1woqa2 not modelled 74.7 24 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:ROK 80 c2f9tB_ not modelled 73.5 29 PDB header:transferase Chain: B: PDB Molecule:pantothenate kinase; PDBTitle: structure of the type iii coaa from pseudomonas aeruginosa 81 d1r59o1 not modelled 73.1 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 82 c1xupO_ not modelled 71.7 13 PDB header:transferase Chain: O: PDB Molecule:glycerol kinase; PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol 83 c3js6A_ not modelled 71.3 15 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized parm protein; PDBTitle: crystal structure of apo psk41 parm protein 84 c3tsuA_ not modelled 70.6 20 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 85 c3cerD_ not modelled 70.3 14 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:possible exopolyphosphatase-like protein; PDBTitle: crystal structure of the exopolyphosphatase-like protein2 q8g5j2. northeast structural genomics consortium target3 blr13 86 d1zbsa1 not modelled 69.6 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 87 c2i7pA_ not modelled 69.3 21 PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 3; PDBTitle: crystal structure of human pank3 in complex with accoa 88 c3smpA_ not modelled 68.7 19 PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase 1; PDBTitle: monoclinic crystal structure of human pantothenate kinase 1 alpha 89 d1zc6a2 not modelled 66.1 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 90 d1vcoa1 not modelled 65.4 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 91 c3nvbA_ not modelled 64.6 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of n-terminal part of the protein bf1531 from2 bacteroides fragilis containing phosphatase domain complexed with mg3 and tungstate 92 c3nurA_ not modelled 61.7 11 PDB header:hydrolase Chain: A: PDB Molecule:amidohydrolase; PDBTitle: crystal structure of a putative amidohydrolase from staphylococcus2 aureus 93 d2p3ra2 not modelled 60.6 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Glycerol kinase 94 c3en9B_ not modelled 59.7 17 PDB header:hydrolase Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase; PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein 95 c1t6dB_ not modelled 59.3 13 PDB header:hydrolase Chain: B: PDB Molecule:exopolyphosphatase; PDBTitle: miras phasing of the aquifex aeolicus ppx/gppa phosphatase: crystal2 structure of the type ii variant 96 d1zxoa2 not modelled 57.5 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 97 d1zc6a1 not modelled 55.9 9 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 98 c3mdqA_ not modelled 52.2 15 PDB header:hydrolase Chain: A: PDB Molecule:exopolyphosphatase; PDBTitle: crystal structure of an exopolyphosphatase (chu_0316) from cytophaga2 hutchinsonii atcc 33406 at 1.50 a resolution 99 d1bupa2 not modelled 51.9 13 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 100 d2ftsa3 not modelled 51.5 15 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 101 d1hnja2 not modelled 51.4 10 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 102 c2fsnB_ not modelled 49.6 13 PDB header:structural protein Chain: B: PDB Molecule:hypothetical protein ta0583; PDBTitle: crystal structure of ta0583, an archaeal actin homolog, complex with2 adp 103 c2p9lA_ not modelled 44.2 11 PDB header:structural protein Chain: A: PDB Molecule:actin-like protein 3; PDBTitle: crystal structure of bovine arp2/3 complex 104 c3aapA_ not modelled 43.8 9 PDB header:hydrolase Chain: A: PDB Molecule:ectonucleoside triphosphate diphosphohydrolase i; PDBTitle: crystal structure of lp1ntpdase from legionella pneumophila 105 c3dwlB_ not modelled 43.5 12 PDB header:structural protein Chain: B: PDB Molecule:actin-related protein 3; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 106 c3kbqA_ not modelled 41.4 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ta0487; PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum 107 d1s1ma1 not modelled 41.1 29 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 108 c3nvaB_ not modelled 41.0 26 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus 109 d1yzya1 not modelled 40.1 21 Fold:YgbK-like Superfamily:YgbK-like Family:YgbK-like 110 d1hjra_ not modelled 40.0 23 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:RuvC resolvase 111 d1gpma1 not modelled 40.0 14 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 112 d2csba1 not modelled 39.8 21 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 113 d1y5ea1 not modelled 39.1 15 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 114 c4a5bA_ not modelled 39.0 44 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside-triphosphatase 2; PDBTitle: crystal structure of the c258s/c268s variant of toxoplasma gondii2 nucleoside triphosphate diphosphohydrolase 1 (ntpdase1) 115 c2zzfA_ not modelled 36.7 17 PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of alanyl-trna synthetase without2 oligomerization domain 116 d2zgya2 not modelled 36.3 12 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 117 d2f7wa1 not modelled 36.3 23 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 118 c3cjpA_ not modelled 35.8 16 PDB header:hydrolase Chain: A: PDB Molecule:predicted amidohydrolase, dihydroorotase family; PDBTitle: crystal structure of an uncharacterized amidohydrolase cac3332 from2 clostridium acetobutylicum 119 d1ub7a2 not modelled 35.5 16 Fold:Thiolase-like Superfamily:Thiolase-like Family:Chalcone synthase-like 120 d1mkza_ not modelled 35.3 21 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0