Email l.a.kelley@imperial.ac.uk Description P77179 Date Thu Jan 5 12:26:01 GMT 2012 Unique Job ID 967f8a4c4c5b0bce

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3mk7K_ 37.9 20 PDB header:oxidoreductase Chain: K: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit n; PDBTitle: the structure of cbb3 cytochrome oxidase 2 c3eh4A_ 33.1 16 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c oxidase subunit 1; PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus 3 c2k21A_ 28.4 20 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 4 d1xmea1 27.6 17 Fold:Cytochrome c oxidase subunit I-like Superfamily:Cytochrome c oxidase subunit I-like Family:Cytochrome c oxidase subunit I-like 5 d1pw4a_ 26.2 16 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 6 d1pv7a_ 25.9 12 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter 7 d2ecba1 25.6 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 8 c2zmeA_ 22.8 27 PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex 9 c3dinD_ 21.1 7 PDB header:membrane protein, protein transport Chain: D: PDB Molecule:preprotein translocase subunit sece; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 10 c3pmiC_ 19.3 18 PDB header:protein binding Chain: C: PDB Molecule:pwwp domain-containing protein mum1; PDBTitle: pwwp domain of human mutated melanoma-associated antigen 1 11 c2jp3A_ 13.4 16 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 12 c1u5tA_ 12.9 3 PDB header:transport protein Chain: A: PDB Molecule:appears to be functionally related to snf7; PDBTitle: structure of the escrt-ii endosomal trafficking complex 13 d1ha7b_ 12.3 15 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 14 d1b8da_ 12.0 18 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 15 c2ntxB_ 10.9 36 PDB header:signaling protein Chain: B: PDB Molecule:emb cab41934.1; 16 d1u5ta1 8.4 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 17 d1cpca_ 8.1 5 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 18 c3mlqD_ 8.0 29 PDB header:transferase/transcription Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain 19 d1phnb_ 8.0 18 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 20 d1eyxb_ 7.9 15 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 21 c3mlqB_ not modelled 7.8 29 PDB header:transferase/transcription Chain: B: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain 22 c2jo1A_ not modelled 7.6 9 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 23 d1a6qa1 not modelled 7.6 80 Fold:Another 3-helical bundle Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain Family:Protein serine/threonine phosphatase 2C, C-terminal domain 24 d1v54a_ not modelled 7.4 9 Fold:Cytochrome c oxidase subunit I-like Superfamily:Cytochrome c oxidase subunit I-like Family:Cytochrome c oxidase subunit I-like 25 c1qfqB_ not modelled 7.3 43 PDB header:transcription/rna Chain: B: PDB Molecule:36-mer n-terminal peptide of the n protein; PDBTitle: bacteriophage lambda n-protein-nutboxb-rna complex 26 c2c7jB_ not modelled 7.2 18 PDB header:electron transport Chain: B: PDB Molecule:phycoerythrocyanin beta chain; PDBTitle: phycoerythrocyanin from mastigocladus laminosus, 295 k,2 3.0 a 27 d1ffta_ not modelled 7.0 9 Fold:Cytochrome c oxidase subunit I-like Superfamily:Cytochrome c oxidase subunit I-like Family:Cytochrome c oxidase subunit I-like 28 c1fftF_ not modelled 7.0 9 PDB header:oxidoreductase Chain: F: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli 29 c2e19A_ not modelled 6.8 6 PDB header:transcription Chain: A: PDB Molecule:transcription factor 8; PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8 30 d1cpcb_ not modelled 6.8 15 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 31 c3mp7A_ not modelled 6.7 50 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase subunit secy; PDBTitle: lateral opening of a translocon upon entry of protein suggests the2 mechanism of insertion into membranes 32 c2kncA_ not modelled 6.7 8 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 33 d1hynp_ not modelled 6.6 26 Fold:Phoshotransferase/anion transport protein Superfamily:Phoshotransferase/anion transport protein Family:Anion transport protein, cytoplasmic domain 34 c2rddB_ not modelled 6.6 14 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 35 d1liab_ not modelled 6.5 15 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 36 c1hynQ_ not modelled 6.5 16 PDB header:membrane protein Chain: Q: PDB Molecule:band 3 anion transport protein; PDBTitle: crystal structure of the cytoplasmic domain of human2 erythrocyte band-3 protein 37 d1kn1a_ not modelled 6.4 21 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 38 d1ar1a_ not modelled 6.4 2 Fold:Cytochrome c oxidase subunit I-like Superfamily:Cytochrome c oxidase subunit I-like Family:Cytochrome c oxidase subunit I-like 39 d1xmec1 not modelled 6.3 53 Fold:Single transmembrane helix Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa Family:Bacterial ba3 type cytochrome c oxidase subunit IIa 40 d1f99b_ not modelled 6.2 20 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 41 c2bbjB_ not modelled 6.1 17 PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter 42 c3smaD_ not modelled 6.0 41 PDB header:transferase Chain: D: PDB Molecule:frbf; PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf 43 d1vp8a_ not modelled 5.9 25 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 44 c2vmlD_ not modelled 5.8 13 PDB header:photosynthesis Chain: D: PDB Molecule:phycocyanin beta chain; PDBTitle: the monoclinic structure of phycocyanin from gloeobacter2 violaceus 45 c3hwpA_ not modelled 5.8 23 PDB header:hydrolase Chain: A: PDB Molecule:phlg; PDBTitle: crystal structure and computational analyses provide insights into the2 catalytic mechanism of 2, 4-diacetylphloroglucinol hydrolase phlg3 from pseudomonas fluorescens 46 c2da7A_ not modelled 5.8 9 PDB header:dna binding protein Chain: A: PDB Molecule:zinc finger homeobox protein 1b; PDBTitle: solution structure of the homeobox domain of zinc finger2 homeobox protein 1b (smad interacting protein 1) 47 c3e4fB_ not modelled 5.8 41 PDB header:transferase Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase; PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis 48 c1cw5A_ not modelled 5.7 29 PDB header:toxin Chain: A: PDB Molecule:type iia bacteriocin carnobacteriocin b2; PDBTitle: solution structure of carnobacteriocin b2 49 d2h8pc1 not modelled 5.7 11 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 50 d1mtyg_ not modelled 5.7 15 Fold:Open three-helical up-and-down bundle Superfamily:Methane monooxygenase hydrolase, gamma subunit Family:Methane monooxygenase hydrolase, gamma subunit 51 c1jb0K_ not modelled 5.7 11 PDB header:photosynthesis Chain: K: PDB Molecule:photosystem 1 reaction centre subunit x; PDBTitle: crystal structure of photosystem i: a photosynthetic reaction center2 and core antenna system from cyanobacteria 52 d1jb0k_ not modelled 5.7 11 Fold:Photosystem I reaction center subunit X, PsaK Superfamily:Photosystem I reaction center subunit X, PsaK Family:Photosystem I reaction center subunit X, PsaK 53 c3gitA_ not modelled 5.7 10 PDB header:transferase Chain: A: PDB Molecule:carbon monoxide dehydrogenase/acetyl-coa synthase subunit PDBTitle: crystal structure of a truncated acetyl-coa synthase 54 d1unld_ not modelled 5.6 29 Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin 55 c1q90L_ not modelled 5.6 38 PDB header:photosynthesis Chain: L: PDB Molecule:cytochrome b6f complex subunit petl; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 56 d1q90l_ not modelled 5.6 38 Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex 57 d1mhyg_ not modelled 5.6 10 Fold:Open three-helical up-and-down bundle Superfamily:Methane monooxygenase hydrolase, gamma subunit Family:Methane monooxygenase hydrolase, gamma subunit 58 c2ka2A_ not modelled 5.4 33 PDB header:membrane protein Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints 59 c2ka1B_ not modelled 5.4 33 PDB header:membrane protein Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles 60 c2ka1A_ not modelled 5.4 33 PDB header:membrane protein Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles 61 c2ka2B_ not modelled 5.4 33 PDB header:membrane protein Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints 62 d1ha7a_ not modelled 5.4 14 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 63 d1jboa_ not modelled 5.4 10 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 64 c1m56G_ not modelled 5.3 5 PDB header:oxidoreductase Chain: G: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobactor2 sphaeroides (wild type) 65 c1peiA_ not modelled 5.3 50 PDB header:nucleotidyltransferase Chain: A: PDB Molecule:pepc22; PDBTitle: nmr structure of the membrane-binding domain of ctp2 phosphocholine cytidylyltransferase, 10 structures 66 d1xg0c_ not modelled 5.2 15 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 67 c2kluA_ not modelled 5.1 23 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 68 c2diiA_ not modelled 5.1 23 PDB header:transcription Chain: A: PDB Molecule:tfiih basal transcription factor complex p62 PDBTitle: solution structure of the bsd domain of human tfiih basal2 transcription factor complex p62 subunit 69 c1ifpA_ not modelled 5.1 32 PDB header:virus Chain: A: PDB Molecule:major coat protein assembly; PDBTitle: inovirus (filamentous bacteriophage) strain pf3 major coat2 protein assembly 70 d1sana_ not modelled 5.1 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 71 d1f99a_ not modelled 5.1 7 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins