Secondary structure and disorder prediction

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10

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20

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30

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40

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50

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60

Sequence

M

A

I

R

K

R

F

I

A

G

A

K

C

P

A

C

Q

A

Q

D

S

M

A

M

W

R

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N

N

I

D

I

V

E

C

V

K

C

G

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M

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A

D

K

E

A

R

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V

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K

D

E

Q

V

I

Secondary structure

SS confidence

Disorder

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Disorder confidence

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Sequence

G

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F

H

P

D

Secondary structure

SS confidence

Disorder

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Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1k81 chain A Region: 11 - 39 Aligned: 28 Modelled: 29 Confidence: 90.7% Identity: 25% Fold: Zinc-binding domain of translation initiation factor 2 beta Superfamily: Zinc-binding domain of translation initiation factor 2 beta Family: Zinc-binding domain of translation initiation factor 2 beta Phyre2 PDB 2e9h chain A Region: 11 - 41 Aligned: 31 Modelled: 31 Confidence: 88.5% Identity: 19% PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5; PDBTitle: solution structure of the eif-5_eif-2b domain from human2 eukaryotic translation initiation factor 5 Phyre2 PDB 3h0g chain I Region: 11 - 44 Aligned: 33 Modelled: 34 Confidence: 88.1% Identity: 36% PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe Phyre2 PDB 1nee chain A Region: 11 - 41 Aligned: 30 Modelled: 31 Confidence: 87.9% Identity: 30% PDB header:translation Chain: A: PDB Molecule:probable translation initiation factor 2 beta PDBTitle: structure of archaeal translation factor aif2beta from2 methanobacterium thermoautrophicum Phyre2 PDB 1nui chain A domain 2 Region: 7 - 58 Aligned: 46 Modelled: 52 Confidence: 84.8% Identity: 20% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: DNA primase zinc finger Phyre2 PDB 3cw2 chain M Region: 11 - 41 Aligned: 30 Modelled: 31 Confidence: 80.6% Identity: 27% PDB header:translation Chain: M: PDB Molecule:translation initiation factor 2 subunit beta; PDBTitle: crystal structure of the intact archaeal translation2 initiation factor 2 from sulfolobus solfataricus . Phyre2 PDB 2dcu chain B Region: 11 - 41 Aligned: 30 Modelled: 31 Confidence: 78.4% Identity: 23% PDB header:translation Chain: B: PDB Molecule:translation initiation factor 2 beta subunit; PDBTitle: crystal structure of translation initiation factor aif2betagamma2 heterodimer with gdp Phyre2 PDB 1twf chain I domain 2 Region: 11 - 48 Aligned: 37 Modelled: 38 Confidence: 74.3% Identity: 19% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 1qyp chain A Region: 11 - 44 Aligned: 34 Modelled: 34 Confidence: 73.6% Identity: 26% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 3k7a chain M Region: 12 - 40 Aligned: 28 Modelled: 29 Confidence: 71.2% Identity: 32% PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex Phyre2 PDB 1y1y chain S Region: 12 - 41 Aligned: 30 Modelled: 30 Confidence: 68.6% Identity: 23% PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex Phyre2 PDB 1pqv chain S Region: 12 - 41 Aligned: 30 Modelled: 30 Confidence: 66.9% Identity: 23% PDB header:transferase/transcription Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis complex Phyre2 PDB 1tfi chain A Region: 12 - 41 Aligned: 30 Modelled: 30 Confidence: 65.4% Identity: 20% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Transcriptional factor domain Phyre2 PDB 1i3q chain I Region: 13 - 57 Aligned: 45 Modelled: 45 Confidence: 64.4% Identity: 20% PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution Phyre2 PDB 2nn6 chain I Region: 11 - 45 Aligned: 29 Modelled: 35 Confidence: 61.4% Identity: 14% PDB header:hydrolase/transferase Chain: I: PDB Molecule:3'-5' exoribonuclease csl4 homolog; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 Phyre2 PDB 2kpi chain A Region: 1 - 41 Aligned: 37 Modelled: 41 Confidence: 60.4% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sco3027; PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58 Phyre2 PDB 2ba1 chain B Region: 11 - 45 Aligned: 29 Modelled: 35 Confidence: 59.9% Identity: 28% PDB header:rna binding protein Chain: B: PDB Molecule:archaeal exosome rna binding protein csl4; PDBTitle: archaeal exosome core Phyre2 PDB 2qkd chain A Region: 11 - 41 Aligned: 31 Modelled: 31 Confidence: 57.2% Identity: 32% PDB header:signaling protein, cell cycle Chain: A: PDB Molecule:zinc finger protein zpr1; PDBTitle: crystal structure of tandem zpr1 domains Phyre2 PDB 1nui chain A Region: 7 - 40 Aligned: 31 Modelled: 34 Confidence: 55.8% Identity: 19% PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein Phyre2 PDB 1wii chain A Region: 13 - 54 Aligned: 42 Modelled: 42 Confidence: 55.4% Identity: 19% Fold: Rubredoxin-like Superfamily: Zinc beta-ribbon Family: Putative zinc binding domain Phyre2 1 d1k81a_ 2 c2e9hA_ 3 c3h0gI_ 4 c1neeA_ 5 d1nuia2 6 c3cw2M_ 7 c2dcuB_ 8 d1twfi2 9 d1qypa_ 10 c3k7aM_ 11 c1y1yS_ 12 c1pqvS_ 13 d1tfia_ 14 c1i3qI_ 15 c2nn6I_ 16 c2kpiA_ 17 c2ba1B_ 18 c2qkdA_ 19 c1nuiA_ 20 d1wiia_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1k81a_ 90.7 25 Fold:Zinc-binding domain of translation initiation factor 2 beta Superfamily:Zinc-binding domain of translation initiation factor 2 beta Family:Zinc-binding domain of translation initiation factor 2 beta 2 c2e9hA_ 88.5 19 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 5; PDBTitle: solution structure of the eif-5_eif-2b domain from human2 eukaryotic translation initiation factor 5 3 c3h0gI_ 88.1 36 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 4 c1neeA_ 87.9 30 PDB header:translation Chain: A: PDB Molecule:probable translation initiation factor 2 beta PDBTitle: structure of archaeal translation factor aif2beta from2 methanobacterium thermoautrophicum 5 d1nuia2 84.8 20 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 6 c3cw2M_ 80.6 27 PDB header:translation Chain: M: PDB Molecule:translation initiation factor 2 subunit beta; PDBTitle: crystal structure of the intact archaeal translation2 initiation factor 2 from sulfolobus solfataricus . 7 c2dcuB_ 78.4 23 PDB header:translation Chain: B: PDB Molecule:translation initiation factor 2 beta subunit; PDBTitle: crystal structure of translation initiation factor aif2betagamma2 heterodimer with gdp 8 d1twfi2 74.3 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 9 d1qypa_ 73.6 26 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 10 c3k7aM_ 71.2 32 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 11 c1y1yS_ 68.6 23 PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex 12 c1pqvS_ 66.9 23 PDB header:transferase/transcription Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis complex 13 d1tfia_ 65.4 20 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 14 c1i3qI_ 64.4 20 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution 15 c2nn6I_ 61.4 14 PDB header:hydrolase/transferase Chain: I: PDB Molecule:3'-5' exoribonuclease csl4 homolog; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 16 c2kpiA_ 60.4 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sco3027; PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58 17 c2ba1B_ 59.9 28 PDB header:rna binding protein Chain: B: PDB Molecule:archaeal exosome rna binding protein csl4; PDBTitle: archaeal exosome core 18 c2qkdA_ 57.2 32 PDB header:signaling protein, cell cycle Chain: A: PDB Molecule:zinc finger protein zpr1; PDBTitle: crystal structure of tandem zpr1 domains 19 c1nuiA_ 55.8 19 PDB header:replication Chain: A: PDB Molecule:dna primase/helicase; PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein 20 d1wiia_ 55.4 19 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Putative zinc binding domain 21 d2fiya1 not modelled 54.1 28 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 22 c2qa4Z_ not modelled 45.6 25 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit 23 d2nn6i1 not modelled 44.2 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 24 d1jj2y_ not modelled 43.6 29 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 25 d1ffkw_ not modelled 43.4 29 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 26 d2jnya1 not modelled 41.3 9 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 27 c2zkrz_ not modelled 41.2 21 PDB header:ribosomal protein/rna Chain: Z: PDB Molecule:e site t-rna; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 28 d1vqoz1 not modelled 39.7 25 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 29 c3cc4Z_ not modelled 39.1 21 PDB header:ribosome Chain: Z: PDB Molecule:50s ribosomal protein l37ae; PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit 30 c2y69S_ not modelled 38.6 18 PDB header:electron transport Chain: S: PDB Molecule:cytochrome c oxidase subunit 5b; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 31 c3n9mC_ not modelled 38.5 18 PDB header:oxidoreductase Chain: C: PDB Molecule:putative uncharacterized protein; PDBTitle: cekdm7a from c.elegans, alone 32 c3cngC_ not modelled 37.7 19 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 33 d1pfta_ not modelled 35.7 23 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 34 c2x5cB_ not modelled 35.6 42 PDB header:viral protein Chain: B: PDB Molecule:hypothetical protein orf131; PDBTitle: crystal structure of hypothetical protein orf131 from2 pyrobaculum spherical virus 35 d1v54f_ not modelled 35.0 17 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Cytochrome c oxidase Subunit F 36 c4a17Y_ not modelled 34.8 21 PDB header:ribosome Chain: Y: PDB Molecule:rpl37a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2. 37 c1yshD_ not modelled 34.3 21 PDB header:structural protein/rna Chain: D: PDB Molecule:ribosomal protein l37a; PDBTitle: localization and dynamic behavior of ribosomal protein l30e 38 d3gata_ not modelled 32.0 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Erythroid transcription factor GATA-1 39 d2ct7a1 not modelled 30.0 20 Fold:RING/U-box Superfamily:RING/U-box Family:IBR domain 40 c2gb5B_ not modelled 25.6 14 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 41 c1s1i9_ not modelled 25.1 20 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. 42 c3ndjA_ not modelled 24.1 11 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product 43 d1dl6a_ not modelled 23.8 14 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 44 d1g47a1 not modelled 22.2 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 45 c3jyw9_ not modelled 19.3 18 PDB header:ribosome Chain: 9: PDB Molecule:60s ribosomal protein l43; PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 46 d2k4xa1 not modelled 19.0 29 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27a 47 d1ctla1 not modelled 18.3 20 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 48 d1qxfa_ not modelled 15.7 30 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27e 49 d2i9be3 not modelled 15.5 14 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Extracellular domain of cell surface receptors 50 d2fd6u3 not modelled 15.4 36 Fold:Snake toxin-like Superfamily:Snake toxin-like Family:Extracellular domain of cell surface receptors 51 c2f9iD_ not modelled 14.8 26 PDB header:transferase Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 52 d2baia1 not modelled 14.6 57 Fold:Viral leader polypeptide zinc finger Superfamily:Viral leader polypeptide zinc finger Family:Viral leader polypeptide zinc finger 53 c2jvyA_ not modelled 14.5 63 PDB header:metal binding protein Chain: A: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: solution structure of the eda-id-related c417f mutant of2 human nemo zinc finger 54 c2js4A_ not modelled 14.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 55 d1ee8a3 not modelled 13.6 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 56 d2ctda1 not modelled 13.2 63 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 57 c3gn5B_ not modelled 13.1 29 PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021) 58 c2opfA_ not modelled 13.0 20 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 59 d1hdoa_ not modelled 13.0 50 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 60 d1twfi1 not modelled 12.9 27 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 61 c3iz6X_ not modelled 12.9 18 PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein s27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 62 d1r2za3 not modelled 12.7 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 63 d5gata_ not modelled 12.5 30 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Erythroid transcription factor GATA-1 64 d1k82a3 not modelled 12.4 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 65 c2aklA_ not modelled 12.1 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa 66 d1osxa_ not modelled 11.9 57 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:BAFF receptor-like 67 c2jr6A_ not modelled 11.8 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 68 d1dxsa_ not modelled 11.8 50 Fold:SAM domain-like Superfamily:SAM/Pointed domain Family:SAM (sterile alpha motif) domain 69 d1hk8a_ not modelled 11.6 35 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 70 c1hk8A_ not modelled 11.6 35 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 71 c1p0tq_ not modelled 11.5 57 PDB header:protein binding Chain: Q: PDB Molecule:tumor necrosis factor receptor superfamily PDBTitle: crystal structure of the baff-baff-r complex (part ii) 72 d1weva_ not modelled 11.5 23 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:PHD domain 73 d1oqen_ not modelled 11.4 57 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:BAFF receptor-like 74 d1l1ta3 not modelled 11.2 18 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 75 c2pq1B_ not modelled 11.1 15 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 76 c2jneA_ not modelled 10.8 30 PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein yfgj; PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound.2 northeast structural genomics consortium target er317. 77 d2jnea1 not modelled 10.8 30 Fold:Rubredoxin-like Superfamily:YfgJ-like Family:YfgJ-like 78 c3lpeF_ not modelled 10.8 29 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 79 c1cl4A_ not modelled 10.6 50 PDB header:viral protein Chain: A: PDB Molecule:protein (gag polyprotein); PDBTitle: nucleocapsid protein from mason-pfizer monkey virus (mpmv) 80 d2akla2 not modelled 10.5 26 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:PhnA zinc-binding domain 81 d1ffya1 not modelled 10.1 57 Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 82 c3a44D_ not modelled 10.0 42 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 83 d1tdza3 not modelled 9.9 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 84 d1ryqa_ not modelled 9.9 15 Fold:Rubredoxin-like Superfamily:RNA polymerase subunits Family:RpoE2-like 85 d2cu8a1 not modelled 9.8 67 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 86 c2f5qA_ not modelled 9.7 18 PDB header:hydrolase/dna Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase; PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2 87 c2gajA_ not modelled 9.7 20 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase i; PDBTitle: structure of full length topoisomerase i from thermotoga maritima in2 monoclinic crystal form 88 c2kwjA_ not modelled 9.7 22 PDB header:metal binding protein Chain: A: PDB Molecule:zinc finger protein dpf3; PDBTitle: solution structures of the double phd fingers of human transcriptional2 protein dpf3 bound to a histone peptide containing acetylation at3 lysine 14 89 c2kdxA_ not modelled 9.6 15 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 90 c3mjhD_ not modelled 9.5 57 PDB header:protein transport Chain: D: PDB Molecule:early endosome antigen 1; PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1 91 d1oqek_ not modelled 9.4 35 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:BAFF receptor-like 92 c2xzm6_ not modelled 9.3 24 PDB header:ribosome Chain: 6: PDB Molecule:rps27e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 93 d1pvma3 not modelled 9.2 23 Fold:Rubredoxin-like Superfamily:Hypothetical protein Ta0289 C-terminal domain Family:Hypothetical protein Ta0289 C-terminal domain 94 c2f9yB_ not modelled 9.1 32 PDB header:ligase Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli 95 d2f9yb1 not modelled 9.1 32 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 96 d1vd4a_ not modelled 9.1 56 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 97 d1imla1 not modelled 9.0 67 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 98 d2gmga1 not modelled 9.0 40 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like 99 c2bx9J_ not modelled 9.0 38 PDB header:transcription regulation Chain: J: PDB Molecule:tryptophan rna-binding attenuator protein-inhibitory PDBTitle: crystal structure of b.subtilis anti-trap protein, an2 antagonist of trap-rna interactions

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0