Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	K	I	I	R	A	G	M	Y	T	T	V	Q	D	G	G	R	H	G	F	R	Q	S	G	I	S	H	C	G	A	L	D	M	P	A	L	R	I	A	N	L	L	V	G	N	D	A	N	A	P	A	L	E	I	T	L	G	Q	L
Secondary structure
SS confidence
Disorder		?				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	V	E	F	E	T	D	G	W	F	A	L	T	G	A	G	C	E	A	R	L	D	D	N	A	V	W	T	G	W	R	L	P	M	K	A	G	Q	R	L	T	L	K	R	P	Q	H	G	M	R	S	Y	L	A	V	A	G	G	I	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	P	P	V	M	G	S	C	S	T	D	L	K	V	G	I	G	G	L	E	G	R	L	L	K	D	G	D	R	L	P	I	G	K	S	K	R	D	S	M	E	A	Q	G	V	K	Q	L	L	W	G	N	R	I	R	A	L	P	G	P
Secondary structure
SS confidence
Disorder												?			?					?	?																?	?		?	?	?	?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	Y	H	E	F	D	R	A	S	Q	D	A	F	W	R	S	P	W	Q	L	S	S	Q	S	N	R	M	G	Y	R	L	Q	G	Q	I	L	K	R	T	T	D	R	E	L	L	S	H	G	L	L	P	G	V	V	Q	V	P	H	N	G
Secondary structure
SS confidence
Disorder																																						?	?	?	?	?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Q	P	I	V	L	M	N	D	A	Q	T	T	G	G	Y	P	R	I	A	C	I	I	E	A	D	M	Y	H	L	A	Q	I	P	L	G	Q	P	I	H	F	V	Q	C	S	L	E	E	A	L	K	A	R	Q	D	Q	Q	R	Y	F	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310
Sequence		Q	L	A	W	R	L	H	N	E	N
Secondary structure
SS confidence
Disorder							?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3mml chain E Region: 2 - 290 Aligned: 284 Modelled: 286 Confidence: 100.0% Identity: 35% PDB header:hydrolase Chain: E: PDB Molecule:allophanate hydrolase subunit 2; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 Phyre2 PDB 3oep chain A Region: 2 - 281 Aligned: 269 Modelled: 280 Confidence: 100.0% Identity: 35% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha0988; PDBTitle: crystal structure of ttha0988 in space group p43212 Phyre2 PDB 2qf7 chain A Region: 7 - 280 Aligned: 254 Modelled: 274 Confidence: 97.3% Identity: 8% PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase protein; PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli Phyre2 PDB 2phc chain B Region: 187 - 287 Aligned: 97 Modelled: 100 Confidence: 96.1% Identity: 15% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ph0987; PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii Phyre2 PDB 2phc chain B domain 1 Region: 187 - 287 Aligned: 97 Modelled: 100 Confidence: 95.6% Identity: 15% Fold: Cyclophilin-like Superfamily: Cyclophilin-like Family: PH0987 C-terminal domain-like Phyre2 PDB 2zp2 chain B Region: 187 - 287 Aligned: 93 Modelled: 100 Confidence: 95.4% Identity: 16% PDB header:transferase inhibitor Chain: B: PDB Molecule:kinase a inhibitor; PDBTitle: c-terminal domain of kipi from bacillus subtilis Phyre2 PDB 2p0o chain A Region: 148 - 287 Aligned: 130 Modelled: 135 Confidence: 93.8% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein duf871; PDBTitle: crystal structure of a conserved protein from locus ef_2437 in2 enterococcus faecalis with an unknown function Phyre2 PDB 1x7f chain A Region: 148 - 282 Aligned: 132 Modelled: 135 Confidence: 91.9% Identity: 14% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:outer surface protein; PDBTitle: crystal structure of an uncharacterized b. cereus protein Phyre2 PDB 1x7f chain A domain 1 Region: 173 - 282 Aligned: 106 Modelled: 110 Confidence: 91.9% Identity: 13% Fold: Cyclophilin-like Superfamily: Cyclophilin-like Family: Outer surface protein, C-terminal domain Phyre2 PDB 3mml chain D Region: 187 - 283 Aligned: 94 Modelled: 93 Confidence: 89.6% Identity: 15% PDB header:hydrolase Chain: D: PDB Molecule:allophanate hydrolase subunit 1; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 Phyre2 PDB 3els chain A Region: 80 - 115 Aligned: 36 Modelled: 36 Confidence: 86.3% Identity: 17% PDB header:splicing Chain: A: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: crystal structure of yeast pml1p, residues 51-204 Phyre2 PDB 2pie chain A domain 1 Region: 60 - 127 Aligned: 68 Modelled: 68 Confidence: 84.9% Identity: 10% Fold: SMAD/FHA domain Superfamily: SMAD/FHA domain Family: FHA domain Phyre2 PDB 1gxc chain A Region: 80 - 113 Aligned: 34 Modelled: 34 Confidence: 81.4% Identity: 15% PDB header:phosphoprotein-binding domain Chain: A: PDB Molecule:serine/threonine-protein kinase chk2; PDBTitle: fha domain from human chk2 kinase in complex with a2 synthetic phosphopeptide Phyre2 PDB 1gxc chain A Region: 80 - 113 Aligned: 34 Modelled: 34 Confidence: 81.4% Identity: 15% Fold: SMAD/FHA domain Superfamily: SMAD/FHA domain Family: FHA domain Phyre2 PDB 2jkd chain B Region: 51 - 115 Aligned: 61 Modelled: 65 Confidence: 80.1% Identity: 10% PDB header:gene regulation Chain: B: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: structure of the yeast pml1 splicing factor and its2 integration into the res complex Phyre2 PDB 1uht chain A Region: 60 - 106 Aligned: 47 Modelled: 47 Confidence: 69.2% Identity: 19% Fold: SMAD/FHA domain Superfamily: SMAD/FHA domain Family: FHA domain Phyre2 PDB 2jpe chain A Region: 60 - 106 Aligned: 47 Modelled: 47 Confidence: 68.0% Identity: 2% PDB header:transcription Chain: A: PDB Molecule:nuclear inhibitor of protein phosphatase 1; PDBTitle: fha domain of nipp1 Phyre2 PDB 3gmg chain B Region: 1 - 98 Aligned: 81 Modelled: 98 Confidence: 67.8% Identity: 21% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rv1825/mt1873; PDBTitle: crystal structure of an uncharacterized conserved protein2 from mycobacterium tuberculosis Phyre2 PDB 2brf chain A domain 1 Region: 60 - 113 Aligned: 54 Modelled: 54 Confidence: 66.5% Identity: 13% Fold: SMAD/FHA domain Superfamily: SMAD/FHA domain Family: FHA domain Phyre2 PDB 1ujx chain A Region: 60 - 114 Aligned: 55 Modelled: 55 Confidence: 65.8% Identity: 7% Fold: SMAD/FHA domain Superfamily: SMAD/FHA domain Family: FHA domain Phyre2 1 c3mmlE_ 2 c3oepA_ 3 c2qf7A_ 4 c2phcB_ 5 d2phcb1 6 c2zp2B_ 7 c2p0oA_ 8 c1x7fA_ 9 d1x7fa1 10 c3mmlD_ 11 c3elsA_ 12 d2piea1 13 c1gxcA_ 14 d1gxca_ 15 c2jkdB_ 16 d1uhta_ 17 c2jpeA_ 18 c3gmgB_ 19 d2brfa1 20 d1ujxa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3mmlE_ 100.0 35 PDB header:hydrolase Chain: E: PDB Molecule:allophanate hydrolase subunit 2; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 2 c3oepA_ 100.0 35 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha0988; PDBTitle: crystal structure of ttha0988 in space group p43212 3 c2qf7A_ 97.3 8 PDB header:ligase Chain: A: PDB Molecule:pyruvate carboxylase protein; PDBTitle: crystal structure of a complete multifunctional pyruvate carboxylase2 from rhizobium etli 4 c2phcB_ 96.1 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ph0987; PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii 5 d2phcb1 95.6 15 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like 6 c2zp2B_ 95.4 16 PDB header:transferase inhibitor Chain: B: PDB Molecule:kinase a inhibitor; PDBTitle: c-terminal domain of kipi from bacillus subtilis 7 c2p0oA_ 93.8 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein duf871; PDBTitle: crystal structure of a conserved protein from locus ef_2437 in2 enterococcus faecalis with an unknown function 8 c1x7fA_ 91.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:outer surface protein; PDBTitle: crystal structure of an uncharacterized b. cereus protein 9 d1x7fa1 91.9 13 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:Outer surface protein, C-terminal domain 10 c3mmlD_ 89.6 15 PDB header:hydrolase Chain: D: PDB Molecule:allophanate hydrolase subunit 1; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436 11 c3elsA_ 86.3 17 PDB header:splicing Chain: A: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: crystal structure of yeast pml1p, residues 51-204 12 d2piea1 84.9 10 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 13 c1gxcA_ 81.4 15 PDB header:phosphoprotein-binding domain Chain: A: PDB Molecule:serine/threonine-protein kinase chk2; PDBTitle: fha domain from human chk2 kinase in complex with a2 synthetic phosphopeptide 14 d1gxca_ 81.4 15 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 15 c2jkdB_ 80.1 10 PDB header:gene regulation Chain: B: PDB Molecule:pre-mrna leakage protein 1; PDBTitle: structure of the yeast pml1 splicing factor and its2 integration into the res complex 16 d1uhta_ 69.2 19 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 17 c2jpeA_ 68.0 2 PDB header:transcription Chain: A: PDB Molecule:nuclear inhibitor of protein phosphatase 1; PDBTitle: fha domain of nipp1 18 c3gmgB_ 67.8 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rv1825/mt1873; PDBTitle: crystal structure of an uncharacterized conserved protein2 from mycobacterium tuberculosis 19 d2brfa1 66.5 13 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 20 d1ujxa_ 65.8 7 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 21 c1yj5C_ not modelled 62.8 11 PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 22 c3poaA_ not modelled 62.3 10 PDB header:peptide binding protein Chain: A: PDB Molecule:putative uncharacterized protein tb39.8; PDBTitle: structural and functional analysis of phosphothreonine-dependent fha2 domain interactions 23 c3kt9A_ not modelled 61.7 16 PDB header:hydrolase Chain: A: PDB Molecule:aprataxin; PDBTitle: aprataxin fha domain 24 d1g3ga_ not modelled 61.5 16 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 25 d2g1la1 not modelled 54.2 20 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 26 c3fm8A_ not modelled 53.9 14 PDB header:transport protein/hydrolase activator Chain: A: PDB Molecule:kinesin-like protein kif13b; PDBTitle: crystal structure of full length centaurin alpha-1 bound with the fha2 domain of kif13b (capri target) 27 c3kf6B_ not modelled 47.4 20 PDB header:structural protein Chain: B: PDB Molecule:protein ten1; PDBTitle: crystal structure of s. pombe stn1-ten1 complex 28 c2eh0A_ not modelled 47.2 12 PDB header:transport protein Chain: A: PDB Molecule:kinesin-like protein kif1b; PDBTitle: solution structure of the fha domain from human kinesin-2 like protein kif1b 29 d1g6ga_ not modelled 46.7 15 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 30 d1dmza_ not modelled 43.4 17 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 31 d1kf6b2 not modelled 41.4 6 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 32 d1yjma1 not modelled 40.1 9 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 33 c3hx1B_ not modelled 38.4 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:slr1951 protein; PDBTitle: crystal structure of the slr1951 protein from synechocystis sp.2 northeast structural genomics consortium target sgr167a 34 c1zeqX_ not modelled 38.0 15 PDB header:metal binding protein Chain: X: PDB Molecule:cation efflux system protein cusf; PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli 35 c2o55A_ not modelled 37.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative glycerophosphodiester phosphodiesterase; PDBTitle: crystal structure of a putative glycerophosphodiester2 phosphodiesterase from galdieria sulphuraria 36 d1dm9a_ not modelled 36.4 11 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 37 c1dm9A_ not modelled 36.4 11 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 38 d2cu3a1 not modelled 34.5 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 39 c2k6pA_ not modelled 34.2 18 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 40 c2kklA_ not modelled 34.0 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mb1858; PDBTitle: solution nmr structure of fha domain of mb1858 from2 mycobacterium bovis. northeast structural genomics3 consortium target mbr243c (24-155). 41 c3ks6A_ not modelled 30.9 18 PDB header:hydrolase Chain: A: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of putative glycerophosphoryl diester2 phosphodiesterase (17743486) from agrobacterium tumefaciens3 str. c58 (dupont) at 1.80 a resolution 42 d1nekb2 not modelled 29.8 6 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 43 c2l55A_ not modelled 29.8 14 PDB header:metal binding protein Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans 44 c3gqsB_ not modelled 29.6 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:adenylate cyclase-like protein; PDBTitle: crystal structure of the fha domain of ct664 protein from chlamydia2 trachomatis 45 d1snoa_ not modelled 28.2 19 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 46 d2affa1 not modelled 27.9 9 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 47 d2ff4a3 not modelled 27.6 5 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 48 d1w96c1 not modelled 27.5 13 Fold:Barrel-sandwich hybrid Superfamily:Rudiment single hybrid motif Family:BC C-terminal domain-like 49 d1rkna_ not modelled 26.5 17 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 50 d1mzka_ not modelled 26.4 9 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 51 c2jqlA_ not modelled 25.6 13 PDB header:cell cycle Chain: A: PDB Molecule:dna damage response protein kinase dun1; PDBTitle: nmr structure of the yeast dun1 fha domain in complex with2 a doubly phosphorylated (pt) peptide derived from rad533 scd1 52 c3uotB_ not modelled 25.6 3 PDB header:cell cycle Chain: B: PDB Molecule:mediator of dna damage checkpoint protein 1; PDBTitle: crystal structure of mdc1 fha domain in complex with a phosphorylated2 peptide from the mdc1 n-terminus 53 c3rlgA_ not modelled 25.3 11 PDB header:hydrolase Chain: A: PDB Molecule:sphingomyelin phosphodiesterase d lisictox-alphaia1a; PDBTitle: crystal structure of loxosceles intermedia phospholipase d isoform 12 h12a mutant 54 d1zud21 not modelled 24.7 14 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 55 c2zplA_ not modelled 24.3 26 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain a 56 d2oyza1 not modelled 24.2 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:VPA0057-like 57 c1r21A_ not modelled 23.9 9 PDB header:cell cycle Chain: A: PDB Molecule:antigen ki-67; PDBTitle: solution structure of human ki67 fha domain 58 d1lgpa_ not modelled 22.9 10 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 59 c3rggD_ not modelled 22.9 28 PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein; PDBTitle: crystal structure of treponema denticola pure bound to air 60 d2bs2b2 not modelled 22.6 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins 61 c2g1eA_ not modelled 22.5 15 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein ta0895; PDBTitle: solution structure of ta0895 62 c2kl0A_ not modelled 22.4 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative thiamin biosynthesis this; PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325 63 c2nnzA_ not modelled 21.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: solution structure of the hypothetical protein af2241 from2 archaeoglobus fulgidus 64 c3eo6B_ not modelled 21.2 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein of unknown function (duf1255); PDBTitle: crystal structure of protein of unknown function (duf1255)2 (afe_2634) from acidithiobacillus ferrooxidans ncib8455 at3 0.97 a resolution 65 d1wlna1 not modelled 21.0 12 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 66 d1k92a1 not modelled 21.0 33 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 67 c3cwiA_ not modelled 20.5 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:thiamine-biosynthesis protein this; PDBTitle: crystal structure of thiamine biosynthesis protein (this)2 from geobacter metallireducens. northeast structural3 genomics consortium target gmr137 68 c3rleA_ not modelled 20.5 33 PDB header:membrane protein Chain: A: PDB Molecule:golgi reassembly-stacking protein 2; PDBTitle: crystal structure of grasp55 grasp domain (residues 7-208) 69 d2z1ca1 not modelled 18.9 9 Fold:OB-fold Superfamily:HupF/HypC-like Family:HupF/HypC-like 70 d1v10a2 not modelled 17.7 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 71 c3i10A_ not modelled 16.9 31 PDB header:hydrolase Chain: A: PDB Molecule:putative glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of putative glycerophosphoryl diester2 phosphodiesterase (np_812074.1) from bacteroides thetaiotaomicron3 vpi-5482 at 1.35 a resolution 72 c2jrtA_ not modelled 16.4 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr solution structure of the protein coded by gene2 rhos4_12090 of rhodobacter sphaeroides. northeast3 structural genomics target rhr5 73 d2soba_ not modelled 15.9 16 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 74 c3hvzB_ not modelled 15.0 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 75 c3ju0A_ not modelled 14.8 38 PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: structure of the arm-type binding domain of hai7 integrase 76 d1u1ha1 not modelled 14.6 44 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Cobalamin-independent methionine synthase 77 c3r6oA_ not modelled 14.3 30 PDB header:isomerase Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; PDBTitle: crystal structure of a probable 2-hydroxyhepta-2,4-diene-1, 7-2 dioateisomerase from mycobacterium abscessus 78 d1zcca1 not modelled 14.1 23 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Glycerophosphoryl diester phosphodiesterase 79 c2aanA_ not modelled 13.9 17 PDB header:electron transport Chain: A: PDB Molecule:auracyanin a; PDBTitle: auracyanin a: a "blue" copper protein from the green thermophilic2 photosynthetic bacterium,chloroflexus aurantiacus 80 d2pyta1 not modelled 13.7 13 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:EutQ-like 81 d1tygb_ not modelled 13.7 3 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 82 d2bh1x1 not modelled 13.5 13 Fold:Alpha-lytic protease prodomain-like Superfamily:EspE N-terminal domain-like Family:GSPII protein E N-terminal domain-like 83 c2bh1Y_ not modelled 13.5 13 PDB header:transport protein Chain: Y: PDB Molecule:general secretion pathway protein e,; PDBTitle: x-ray structure of the general secretion pathway complex of2 the n-terminal domain of epse and the cytosolic domain of3 epsl of vibrio cholerae 84 c3rlhA_ not modelled 13.4 13 PDB header:hydrolase Chain: A: PDB Molecule:sphingomyelin phosphodiesterase d lisictox-alphaia1a; PDBTitle: crystal structure of a class ii phospholipase d from loxosceles2 intermedia venom 85 d1tkea1 not modelled 13.3 13 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 86 d1nyra2 not modelled 13.3 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 87 c2vgmA_ not modelled 13.2 17 PDB header:cell cycle Chain: A: PDB Molecule:dom34; PDBTitle: structure of yeast dom34 : a protein related to translation2 termination factor erf1 and involved in no-go decay. 88 c1kh2D_ not modelled 13.0 35 PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp 89 c1tygG_ not modelled 12.8 0 PDB header:biosynthetic protein Chain: G: PDB Molecule:yjbs; PDBTitle: structure of the thiazole synthase/this complex 90 c3rpfB_ not modelled 12.8 13 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase catalytic subunit; PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 91 d1j20a1 not modelled 12.5 35 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 92 c3hqxA_ not modelled 12.4 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0345 protein aciad0356; PDBTitle: crystal structure of protein of unknown function (duf1255,pf06865)2 from acinetobacter sp. adp1 93 d2oa4a1 not modelled 12.4 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:SPO1678-like 94 d1vl2a1 not modelled 12.0 31 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:N-type ATP pyrophosphatases 95 c2zpmA_ not modelled 12.0 18 PDB header:hydrolase Chain: A: PDB Molecule:regulator of sigma e protease; PDBTitle: crystal structure analysis of pdz domain b 96 c2x4iA_ not modelled 11.6 6 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein 114; PDBTitle: orf 114a from sulfolobus islandicus rudivirus 1 97 c3r7kB_ not modelled 11.6 13 PDB header:oxidoreductase Chain: B: PDB Molecule:probable acyl coa dehydrogenase; PDBTitle: crystal structure of a probable acyl coa dehydrogenase from2 mycobacterium abscessus atcc 19977 / dsm 44196 98 d1tt2a_ not modelled 11.5 19 Fold:OB-fold Superfamily:Staphylococcal nuclease Family:Staphylococcal nuclease 99 c3no3A_ not modelled 11.5 21 PDB header:hydrolase Chain: A: PDB Molecule:glycerophosphodiester phosphodiesterase; PDBTitle: crystal structure of a glycerophosphodiester phosphodiesterase2 (bdi_0402) from parabacteroides distasonis atcc 8503 at 1.89 a3 resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0