15/01/2012 17:59:27 : INFO  : Run start: Sun Jan 15 17:59:26 GMT 2012
15/01/2012 17:59:31 : INFO  : Initialised job
15/01/2012 17:59:32 : INFO  : Renaming log file 'phyre2_20120115_175926.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/946140ee4e120a9f/phyre_20120115_175926.log'
15/01/2012 17:59:33 : INFO  : Initialised job:
Sequence
>batch____
MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLVGNDANAPALEITLGQL
TVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTLKRPQHGMRSYLAVAGGID
VPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSMEAQGVKQLLWGNRIRALPGP
EYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKRTTDRELLSHGLLPGVVQVPHNG
QPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQPIHFVQCSLEEALKARQDQQRYFE
QLAWRLHNEN

15/01/2012 17:59:34 : INFO  : Checked sequence
15/01/2012 17:59:36 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 17:59:36 : INFO  : PSI-BLAST 3 iterations
15/01/2012 18:01:39 : INFO  : PSI-BLAST 5 iterations
15/01/2012 18:03:07 : INFO  : Finished PSI-BLAST
15/01/2012 18:03:08 : INFO  : Running Buildali to generate a3m file
15/01/2012 18:09:15 : INFO  : Converting to HMM
15/01/2012 18:09:16 : INFO  : Calibrating HMM
15/01/2012 18:09:26 : INFO  : Searching HMM database
15/01/2012 18:17:15 : INFO  : Finished buildali
15/01/2012 18:17:16 : INFO  : Predicting secondary structure
15/01/2012 18:17:18 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 18:17:19 : INFO  : Predicting Disordered regions
15/01/2012 18:17:20 : INFO  : Predicted Disorder (Disopred)
15/01/2012 18:17:22 : INFO  : Running memsat_svm check
15/01/2012 18:18:13 : INFO  : Globular protein
15/01/2012 18:18:13 : INFO  : Predicted Transmembrane (memsat_svm) ID '946140ee4e120a9f'
15/01/2012 18:18:14 : INFO  : Initialising fold library search
15/01/2012 18:18:15 : INFO  : Initialised search input
15/01/2012 18:18:16 : INFO  : Building Ensemble models
15/01/2012 18:18:18 : INFO  : Building hh.c3mmlE_.model.1.pdb
15/01/2012 18:18:24 : INFO  : Building hh.c3oepA_.model.2.pdb
15/01/2012 18:18:29 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/946140ee4e120a9f/hh.c3oepA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/946140ee4e120a9f/c3oepA_.2.pdb
15/01/2012 18:18:31 : INFO  : Building c3mmlE_.1.pdb
15/01/2012 18:18:36 : INFO  : Building c3oepA_.2.pdb
15/01/2012 18:18:41 : INFO  : Building c2qf7A_.3.pdb
15/01/2012 18:18:47 : INFO  : Building c2phcB_.4.pdb
15/01/2012 18:18:52 : INFO  : Building d2phcb1.5.pdb
15/01/2012 18:18:57 : INFO  : Building c2zp2B_.6.pdb
15/01/2012 18:19:02 : INFO  : Building c2p0oA_.7.pdb
15/01/2012 18:19:10 : INFO  : Building c1x7fA_.8.pdb
15/01/2012 18:19:15 : INFO  : Building d1x7fa1.9.pdb
15/01/2012 18:19:19 : INFO  : Building c3mmlD_.10.pdb
15/01/2012 18:19:24 : INFO  : Building c3elsA_.11.pdb
15/01/2012 18:19:29 : INFO  : Building d2piea1.12.pdb
15/01/2012 18:19:34 : INFO  : Building c1gxcA_.13.pdb
15/01/2012 18:19:39 : INFO  : Building d1gxca_.14.pdb
15/01/2012 18:19:47 : INFO  : Building c2jkdB_.15.pdb
15/01/2012 18:19:55 : INFO  : Building d1uhta_.16.pdb
15/01/2012 18:20:01 : INFO  : Building c2jpeA_.17.pdb
15/01/2012 18:20:08 : INFO  : Building c3gmgB_.18.pdb
15/01/2012 18:20:15 : INFO  : Building d2brfa1.19.pdb
15/01/2012 18:20:24 : INFO  : Building d1ujxa_.20.pdb
15/01/2012 18:20:53 : INFO  : Finished HH model building
15/01/2012 18:20:56 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 18:21:54 : INFO  : html domain output complete ID '946140ee4e120a9f'
15/01/2012 18:50:21 : INFO  : Run end  : Sun Jan 15 18:50:20 GMT 2012
