Phyre 2 alignment of P75745 with c2vgmA_

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Job Description | P75745
Confidence | 13.18% | Date | Thu Jan 5 12:13:41 GMT 2012
Rank | 87 | Aligned Residues | 30
% Identity | 17% | Template | c2vgmA_
PDB info | PDB header:cell cycle | Chain: A: PDB Molecule:dom34; | PDBTitle: structure of yeast dom34 : a protein related to translation2 termination factor erf1 and involved in no-go decay.
Resolution | 2.6 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 253 | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . |  | . | . | . | . | . | . | . | 280 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | G | G | Y | P | R | I | A | C | I | I | E | A | D | M | Y | H | L | A | Q | I | . | P | L | G | Q | P | I | H | F | V | Q
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |
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Template Sequence |  | G | A | V | I | T | L | L | P | E | D | K | E | D | L | F | T | V | Y | Q | I | V | D | K | D | D | E | L | I | F | K | K
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  | T | T |  |  | T | T |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 15 | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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