Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	G	K	F	R	C	I	L	L	L	I	A	G	L	F	V	S	S	L	S	Y	A	E	N	T	E	I	P	S	Y	E	E	G	I	S	L	F	D	V	E	A	T	L	Q	P	D	G	V	L	D	I	K	E	N	I	H	F	Q	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?																?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	N	Q	Q	I	K	H	G	F	Y	R	D	L	P	R	L	W	M	Q	P	D	G	D	A	A	L	L	N	Y	H	I	V	G	V	T	R	D	G	I	P	E	P	W	H	L	D	W	H	I	G	L	M	S	I	V	V	G	D	K	Q
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?	?																						?											?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	F	L	P	Q	G	D	Y	H	Y	Q	I	H	Y	Q	V	K	N	A	F	L	R	E	G	D	S	D	L	L	I	W	N	V	T	G	N	H	W	P	F	E	I	Y	K	T	R	F	S	L	Q	F	S	N	I	A	G	N	P	F	S
Secondary structure
SS confidence
Disorder		?	?																																																				?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	I	D	L	F	T	G	E	E	G	D	T	Y	R	N	G	R	I	L	E	D	G	R	I	E	S	R	D	P	F	Y	R	E	D	F	T	V	L	Y	R	W	P	H	A	L	L	S	N	A	S	A	P	Q	T	T	N	I	F	S	H
Secondary structure
SS confidence
Disorder															?														?	?																							?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	L	L	P	S	T	S	S	L	L	I	W	F	P	C	L	F	L	V	C	G	W	L	Y	L	W	K	R	R	P	Q	F	T	P	V	D	V	I	E	T	D	V	I	P	P	D	Y	T	P	G	M	L	R	L	D	A	K	L	V	Y
Secondary structure
SS confidence
Disorder								?																			?		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	D	K	G	F	C	A	D	I	V	N	L	I	V	K	G	K	I	H	L	E	D	Q	S	D	K	N	Q	Q	I	L	I	R	V	N	E	G	A	T	R	N	N	A	V	L	L	P	A	E	Q	L	L	L	E	A	L	F	R	K	G
Secondary structure
SS confidence
Disorder																							?			?	?	?									?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		D	K	V	V	L	T	G	R	R	N	R	V	L	R	R	A	F	L	R	M	Q	K	F	Y	L	P	R	K	K	S	S	F	Y	R	S	D	T	F	L	Q	W	G	G	L	A	I	L	A	V	I	L	Y	G	N	L	S	P	V	G	W
Secondary structure
SS confidence
Disorder		?							?	?	?	?																	?	?	?								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		A	G	M	S	L	V	G	D	M	F	I	M	I	C	W	I	I	P	F	L	F	C	S	L	E	L	L	F	A	R	D	D	D	K	P	C	V	N	R	V	I	I	T	L	F	L	P	L	I	C	S	G	V	A	F	Y	S	L	Y	I
Secondary structure
SS confidence
Disorder																									?		?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		N	V	G	D	V	F	F	Y	W	Y	M	P	A	G	Y	F	T	A	V	C	L	T	G	Y	L	T	G	M	G	Y	I	F	L	P	K	F	T	Q	T	G	Q	Q	R	Y	A	H	G	E	A	I	V	N	Y	L	A	R	K	E	A	A
Secondary structure
SS confidence
Disorder								?																											?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600
Sequence		T	H	S	G	R	R	R	K	G	E	T	R	K	L	D	Y	A	L	L	G	W	A	I	S	A	N	L	G	R	E	W	A	L	R	I	A	P	S	L	S	S	A	I	R	A	P	E	I	A	R	N	G	V	L	F	S	L	Q	T	H
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?																																	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
Sequence		L	S	C	G	A	N	T	S	L	L	G	R	S	Y	S	G	G	G	A	G	G	G	A	G	G	G	G	G	G	G	W
Secondary structure
SS confidence
Disorder									?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3kd4 chain A Region: 32 - 211 Aligned: 168 Modelled: 180 Confidence: 87.5% Identity: 9% PDB header:hydrolase Chain: A: PDB Molecule:putative protease; PDBTitle: crystal structure of a putative protease (bdi_1141) from2 parabacteroides distasonis atcc 8503 at 2.00 a resolution Phyre2 PDB 3b7s chain A domain 2 Region: 33 - 138 Aligned: 92 Modelled: 93 Confidence: 72.1% Identity: 9% Fold: Leukotriene A4 hydrolase N-terminal domain Superfamily: Leukotriene A4 hydrolase N-terminal domain Family: Leukotriene A4 hydrolase N-terminal domain Phyre2 PDB 3ebh chain A Region: 26 - 171 Aligned: 130 Modelled: 133 Confidence: 71.9% Identity: 5% PDB header:hydrolase inhibitor Chain: A: PDB Molecule:m1 family aminopeptidase; PDBTitle: structure of the m1 alanylaminopeptidase from malaria complexed with2 bestatin Phyre2 PDB 3b7u chain X Region: 34 - 137 Aligned: 90 Modelled: 90 Confidence: 61.6% Identity: 10% PDB header:hydrolase Chain: X: PDB Molecule:leukotriene a-4 hydrolase; PDBTitle: leukotriene a4 hydrolase complexed with kelatorphan Phyre2 PDB 2gtq chain A Region: 26 - 171 Aligned: 121 Modelled: 130 Confidence: 52.9% Identity: 12% PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase n; PDBTitle: crystal structure of aminopeptidase n from human pathogen neisseria2 meningitidis Phyre2 PDB 3cia chain A Region: 32 - 171 Aligned: 116 Modelled: 121 Confidence: 51.5% Identity: 9% PDB header:hydrolase Chain: A: PDB Molecule:cold-active aminopeptidase; PDBTitle: crystal structure of cold-aminopeptidase from colwellia2 psychrerythraea Phyre2 PDB 2xpy chain A Region: 32 - 174 Aligned: 126 Modelled: 143 Confidence: 35.6% Identity: 10% PDB header:hydrolase Chain: A: PDB Molecule:leukotriene a-4 hydrolase; PDBTitle: structure of native leukotriene a4 hydrolase from saccharomyces2 cerevisiae Phyre2 PDB 2eth chain A domain 1 Region: 285 - 387 Aligned: 96 Modelled: 103 Confidence: 33.5% Identity: 13% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MarR-like transcriptional regulators Phyre2 PDB 1tkn chain A Region: 527 - 559 Aligned: 26 Modelled: 33 Confidence: 28.9% Identity: 12% Fold: STAT-like Superfamily: CAPPD, an extracellular domain of amyloid beta A4 protein Family: CAPPD, an extracellular domain of amyloid beta A4 protein Phyre2 PDB 1lj9 chain A Region: 285 - 389 Aligned: 98 Modelled: 105 Confidence: 26.4% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MarR-like transcriptional regulators Phyre2 PDB 2fbh chain A domain 1 Region: 284 - 386 Aligned: 96 Modelled: 103 Confidence: 22.9% Identity: 10% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MarR-like transcriptional regulators Phyre2 PDB 3hd7 chain A Region: 353 - 418 Aligned: 66 Modelled: 66 Confidence: 21.8% Identity: 8% PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 Phyre2 PDB 3se6 chain A Region: 36 - 220 Aligned: 170 Modelled: 183 Confidence: 19.7% Identity: 12% PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 2; PDBTitle: crystal structure of the human endoplasmic reticulum aminopeptidase 2 Phyre2 PDB 2i7u chain A Region: 624 - 630 Aligned: 7 Modelled: 6 Confidence: 19.5% Identity: 100% PDB header:de novo protein/ligand binding protein Chain: A: PDB Molecule:four-alpha-helix bundle; PDBTitle: structural and dynamical analysis of a four-alpha-helix2 bundle with designed anesthetic binding pockets Phyre2 PDB 3nrv chain C Region: 285 - 386 Aligned: 95 Modelled: 102 Confidence: 18.3% Identity: 13% PDB header:transcription regulator Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family); PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1 Phyre2 PDB 2a61 chain A domain 1 Region: 285 - 388 Aligned: 97 Modelled: 104 Confidence: 17.9% Identity: 9% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MarR-like transcriptional regulators Phyre2 PDB 2rng chain A Region: 577 - 621 Aligned: 45 Modelled: 45 Confidence: 16.8% Identity: 13% PDB header:antimicrobial protein Chain: A: PDB Molecule:big defensin; PDBTitle: solution structure of big defensin Phyre2 PDB 3g3z chain A Region: 285 - 391 Aligned: 100 Modelled: 107 Confidence: 15.3% Identity: 12% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis Phyre2 PDB 2rh0 chain B Region: 158 - 184 Aligned: 27 Modelled: 27 Confidence: 14.9% Identity: 11% PDB header:nuclear protein Chain: B: PDB Molecule:nudc domain-containing protein 2; PDBTitle: crystal structure of nudc domain-containing protein 22 (13542905) from mus musculus at 1.95 a resolution Phyre2 PDB 1xp8 chain A domain 2 Region: 574 - 598 Aligned: 25 Modelled: 25 Confidence: 12.0% Identity: 16% Fold: Anti-LPS factor/recA domain Superfamily: RecA protein, C-terminal domain Family: RecA protein, C-terminal domain Phyre2 1 c3kd4A_ 2 d3b7sa2 3 c3ebhA_ 4 c3b7uX_ 5 c2gtqA_ 6 c3ciaA_ 7 c2xpyA_ 8 d2etha1 9 d1tkna_ 10 d1lj9a_ 11 d2fbha1 12 c3hd7A_ 13 c3se6A_ 14 c2i7uA_ 15 c3nrvC_ 16 d2a61a1 17 c2rngA_ 18 c3g3zA_ 19 c2rh0B_ 20 d1xp8a2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3kd4A_ 87.5 9 PDB header:hydrolase Chain: A: PDB Molecule:putative protease; PDBTitle: crystal structure of a putative protease (bdi_1141) from2 parabacteroides distasonis atcc 8503 at 2.00 a resolution 2 d3b7sa2 72.1 9 Fold:Leukotriene A4 hydrolase N-terminal domain Superfamily:Leukotriene A4 hydrolase N-terminal domain Family:Leukotriene A4 hydrolase N-terminal domain 3 c3ebhA_ 71.9 5 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:m1 family aminopeptidase; PDBTitle: structure of the m1 alanylaminopeptidase from malaria complexed with2 bestatin 4 c3b7uX_ 61.6 10 PDB header:hydrolase Chain: X: PDB Molecule:leukotriene a-4 hydrolase; PDBTitle: leukotriene a4 hydrolase complexed with kelatorphan 5 c2gtqA_ 52.9 12 PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase n; PDBTitle: crystal structure of aminopeptidase n from human pathogen neisseria2 meningitidis 6 c3ciaA_ 51.5 9 PDB header:hydrolase Chain: A: PDB Molecule:cold-active aminopeptidase; PDBTitle: crystal structure of cold-aminopeptidase from colwellia2 psychrerythraea 7 c2xpyA_ 35.6 10 PDB header:hydrolase Chain: A: PDB Molecule:leukotriene a-4 hydrolase; PDBTitle: structure of native leukotriene a4 hydrolase from saccharomyces2 cerevisiae 8 d2etha1 33.5 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 9 d1tkna_ 28.9 12 Fold:STAT-like Superfamily:CAPPD, an extracellular domain of amyloid beta A4 protein Family:CAPPD, an extracellular domain of amyloid beta A4 protein 10 d1lj9a_ 26.4 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 11 d2fbha1 22.9 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 12 c3hd7A_ 21.8 8 PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1 13 c3se6A_ 19.7 12 PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 2; PDBTitle: crystal structure of the human endoplasmic reticulum aminopeptidase 2 14 c2i7uA_ 19.5 100 PDB header:de novo protein/ligand binding protein Chain: A: PDB Molecule:four-alpha-helix bundle; PDBTitle: structural and dynamical analysis of a four-alpha-helix2 bundle with designed anesthetic binding pockets 15 c3nrvC_ 18.3 13 PDB header:transcription regulator Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family); PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1 16 d2a61a1 17.9 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 17 c2rngA_ 16.8 13 PDB header:antimicrobial protein Chain: A: PDB Molecule:big defensin; PDBTitle: solution structure of big defensin 18 c3g3zA_ 15.3 12 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis 19 c2rh0B_ 14.9 11 PDB header:nuclear protein Chain: B: PDB Molecule:nudc domain-containing protein 2; PDBTitle: crystal structure of nudc domain-containing protein 22 (13542905) from mus musculus at 1.95 a resolution 20 d1xp8a2 12.0 16 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 21 d1s3ja_ not modelled 11.1 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators 22 c3bj6B_ not modelled 11.0 11 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcription regulator sp03579 23 d1rw6a_ not modelled 10.9 12 Fold:STAT-like Superfamily:CAPPD, an extracellular domain of amyloid beta A4 protein Family:CAPPD, an extracellular domain of amyloid beta A4 protein 24 c3k66A_ not modelled 10.6 19 PDB header:cell adhesion Chain: A: PDB Molecule:beta-amyloid-like protein; PDBTitle: x-ray crystal structure of the e2 domain of c. elegans apl-1 25 c3bogC_ not modelled 10.3 87 PDB header:antifreeze protein Chain: C: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein quasi-racemate 26 c3bogD_ not modelled 10.3 87 PDB header:antifreeze protein Chain: D: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein quasi-racemate 27 c1z5hB_ not modelled 10.2 12 PDB header:hydrolase Chain: B: PDB Molecule:tricorn protease interacting factor f3; PDBTitle: crystal structures of the tricorn interacting factor f32 from thermoplasma acidophilum 28 c3bjaA_ not modelled 9.7 11 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family, putative; PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution 29 c3ju0A_ not modelled 9.6 18 PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: structure of the arm-type binding domain of hai7 integrase 30 c2zouB_ not modelled 9.2 21 PDB header:cell adhesion Chain: B: PDB Molecule:spondin-1; PDBTitle: crystal struture of human f-spondin reeler domain (fragment 2) 31 c2vn2B_ not modelled 9.0 19 PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426 32 d2v9va2 not modelled 7.9 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB 33 c3cwcB_ not modelled 7.8 35 PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 34 c3jtzA_ not modelled 7.4 21 PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: structure of the arm-type binding domain of hpi integrase 35 c1cn3F_ not modelled 7.1 88 PDB header:viral protein Chain: F: PDB Molecule:fragment of coat protein vp2; PDBTitle: interaction of polyomavirus internal protein vp2 with major2 capsid protein vp1 and implications for participation of3 vp2 in viral entry 36 c2fl8N_ not modelled 6.6 10 PDB header:virus/viral protein Chain: N: PDB Molecule:baseplate structural protein gp10; PDBTitle: fitting of the gp10 trimer structure into the cryoem map of the2 bacteriophage t4 baseplate in the hexagonal conformation. 37 c2pqnB_ not modelled 6.6 27 PDB header:apoptosis Chain: B: PDB Molecule:mitochondrial division protein 1; PDBTitle: crystal structure of yeast fis1 complexed with a fragment of yeast2 mdv1 38 c3c5pF_ not modelled 6.6 16 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein bas0735 of unknown function; PDBTitle: crystal structure of bas0735, a protein of unknown function from2 bacillus anthracis str. sterne 39 c3cooB_ not modelled 6.4 21 PDB header:cell adhesion Chain: B: PDB Molecule:spondin-1; PDBTitle: the crystal structure of reelin-n domain of f-spondin 40 c2oq0D_ not modelled 6.3 16 PDB header:protein binding Chain: D: PDB Molecule:gamma-interferon-inducible protein ifi-16; PDBTitle: crystal structure of the first hin-200 domain of interferon-inducible2 protein 16 41 c3pa8A_ not modelled 6.2 9 PDB header:toxin/peptide inhibitor Chain: A: PDB Molecule:toxin b; PDBTitle: structure of the c. difficile tcdb cysteine protease domain in complex2 with a peptide inhibitor 42 c2l3nA_ not modelled 6.2 53 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein rap1, telomere length regulator taz1; PDBTitle: solution structure of rap1-taz1 fusion protein 43 c2rddB_ not modelled 6.0 7 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 44 c2khuA_ not modelled 6.0 25 PDB header:transferase/protein binding Chain: A: PDB Molecule:immunoglobulin g-binding protein g, dna PDBTitle: solution structure of the ubiquitin-binding motif of human2 polymerase iota 45 c2l0gA_ not modelled 5.9 25 PDB header:protein binding Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: solution nmr structure of ubiquitin-binding motif (ubm2) of human2 polymerase iota 46 c3pmrB_ not modelled 5.9 27 PDB header:cell adhesion Chain: B: PDB Molecule:amyloid-like protein 1; PDBTitle: crystal structure of e2 domain of human amyloid precursor-like protein2 1 47 d2hyma1 not modelled 5.8 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 48 c2nnnB_ not modelled 5.8 12 PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulator; PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa 49 d1wfia_ not modelled 5.6 7 Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:Nuclear movement domain 50 c3n39D_ not modelled 5.5 14 PDB header:oxidoreductase Chain: D: PDB Molecule:protein nrdi; PDBTitle: ribonucleotide reductase dimanganese(ii)-nrdf from escherichia coli in2 complex with nrdi 51 c2x8kB_ not modelled 5.3 12 PDB header:viral protein Chain: B: PDB Molecule:hypothetical protein 19.1; PDBTitle: crystal structure of spp1 dit (gp 19.1) protein, a paradigm2 of hub adsorption apparatus in gram-positive infecting3 phages. 52 c2o30A_ not modelled 5.3 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nuclear movement protein; PDBTitle: nuclear movement protein from e. cuniculi gb-m1 53 c2kncA_ not modelled 5.3 18 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 54 c2jo1A_ not modelled 5.3 23 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 55 c1kn7A_ not modelled 5.2 30 PDB header:membrane protein Chain: A: PDB Molecule:voltage-gated potassium channel protein kv1.4; PDBTitle: solution structure of the tandem inactivation domain2 (residues 1-75) of potassium channel rck4 (kv1.4) 56 d1ubea2 not modelled 5.2 16 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 57 d1mo6a2 not modelled 5.1 16 Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain 58 c2qwwB_ not modelled 5.0 13 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0