Phyre 2 alignment of P45848 with c2l0gA_

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Job Description | P45848
Confidence | 5.93% | Date | Thu Jan 5 12:03:51 GMT 2012
Rank | 45 | Aligned Residues | 24
% Identity | 25% | Template | c2l0gA_
PDB info | PDB header:protein binding | Chain: A: PDB Molecule:dna polymerase iota; | PDBTitle: solution nmr structure of ubiquitin-binding motif (ubm2) of human2 polymerase iota
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 547 | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | K | G | E | T | R | K | L | D | Y | A | L | L | G | W | A | I | S | A | N | L | G | R | E | W
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | S | D | I | D | P | Q | V | F | Y | E | . | L | P | E | A | V | Q | K | E | L | L | A | E | W
Template Known Secondary structure |  | S | S | S |  |  |  |  |  |  |  |  | . | S |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 680 | . | . | . | . | . | . | . | . | . | 690 |  | . | . | . | . | . | . | . | . | . | 700 | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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