10/01/2012 04:05:33 : INFO  : Run start: Tue Jan 10 04:05:31 GMT 2012
10/01/2012 04:05:40 : INFO  : Initialised job
10/01/2012 04:05:43 : INFO  : Renaming log file 'phyre2_20120110_040530.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/93f9ac25c7956663/phyre_20120110_040530.log'
10/01/2012 04:05:45 : INFO  : Initialised job:
Sequence
>batch____
MAGKFRCILLLIAGLFVSSLSYAENTEIPSYEEGISLFDVEATLQPDGVLDIKENIHFQA
RNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEPWHLDWHIGLMSIVVGDKQ
RFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPFEIYKTRFSLQFSNIAGNPFS
EIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVLYRWPHALLSNASAPQTTNIFSH
LLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVDVIETDVIPPDYTPGMLRLDAKLVY
DDKGFCADIVNLIVKGKIHLEDQSDKNQQILIRVNEGATRNNAVLLPAEQLLLEALFRKG
DKVVLTGRRNRVLRRAFLRMQKFYLPRKKSSFYRSDTFLQWGGLAILAVILYGNLSPVGW
AGMSLVGDMFIMICWIIPFLFCSLELLFARDDDKPCVNRVIITLFLPLICSGVAFYSLYI
NVGDVFFYWYMPAGYFTAVCLTGYLTGMGYIFLPKFTQTGQQRYAHGEAIVNYLARKEAA
THSGRRRKGETRKLDYALLGWAISANLGREWALRIAPSLSSAIRAPEIARNGVLFSLQTH
LSCGANTSLLGRSYSGGGAGGGAGGGGGGGW

10/01/2012 04:05:46 : INFO  : Checked sequence
10/01/2012 04:05:50 : INFO  : Finding homologues with PSI-BLAST
10/01/2012 04:05:52 : INFO  : PSI-BLAST 3 iterations
10/01/2012 04:08:48 : INFO  : PSI-BLAST 5 iterations
10/01/2012 04:11:01 : INFO  : Finished PSI-BLAST
10/01/2012 04:11:04 : INFO  : Running Buildali to generate a3m file
10/01/2012 04:20:34 : INFO  : Converting to HMM
10/01/2012 04:20:38 : INFO  : Calibrating HMM
10/01/2012 04:21:02 : INFO  : Searching HMM database
10/01/2012 04:31:26 : INFO  : Finished buildali
10/01/2012 04:31:29 : INFO  : Predicting secondary structure
10/01/2012 04:31:42 : INFO  : Predicted secondary structure (PSI-Pred)
10/01/2012 04:31:45 : INFO  : Predicting Disordered regions
10/01/2012 04:31:51 : INFO  : Predicted Disorder (Disopred)
10/01/2012 04:31:54 : INFO  : Running memsat_svm check
10/01/2012 04:35:01 : INFO  : Globular protein
10/01/2012 04:35:03 : INFO  : Predicted Transmembrane (memsat_svm) ID '93f9ac25c7956663'
10/01/2012 04:35:07 : INFO  : Initialising fold library search
10/01/2012 04:35:12 : INFO  : Initialised search input
10/01/2012 04:35:15 : INFO  : Building Ensemble models
10/01/2012 04:35:21 : INFO  : Building hh.c3kd4A_.model.1.pdb
10/01/2012 04:35:44 : INFO  : Building c3kd4A_.1.pdb
10/01/2012 04:36:05 : INFO  : Building d3b7sa2.2.pdb
10/01/2012 04:36:27 : INFO  : Building c3ebhA_.3.pdb
10/01/2012 04:36:48 : INFO  : Building c3b7uX_.4.pdb
10/01/2012 04:37:10 : INFO  : Building c2gtqA_.5.pdb
10/01/2012 04:37:30 : INFO  : Building c3ciaA_.6.pdb
10/01/2012 04:37:51 : INFO  : Building c2xpyA_.7.pdb
10/01/2012 04:38:12 : INFO  : Building d2etha1.8.pdb
10/01/2012 04:38:33 : INFO  : Building d1tkna_.9.pdb
10/01/2012 04:38:54 : INFO  : Building d1lj9a_.10.pdb
10/01/2012 04:39:14 : INFO  : Building d2fbha1.11.pdb
10/01/2012 04:39:35 : INFO  : Building c3hd7A_.12.pdb
10/01/2012 04:39:57 : INFO  : Building c3se6A_.13.pdb
10/01/2012 04:40:19 : INFO  : Building c2i7uA_.14.pdb
10/01/2012 04:40:44 : INFO  : Building c3nrvC_.15.pdb
10/01/2012 04:41:04 : INFO  : Building d2a61a1.16.pdb
10/01/2012 04:41:26 : INFO  : Building c2rngA_.17.pdb
10/01/2012 04:41:47 : INFO  : Building c3g3zA_.18.pdb
10/01/2012 04:42:08 : INFO  : Building c2rh0B_.19.pdb
10/01/2012 04:42:29 : INFO  : Building d1xp8a2.20.pdb
10/01/2012 04:43:17 : INFO  : Finished HH model building
10/01/2012 04:43:19 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
10/01/2012 04:44:28 : INFO  : html domain output complete ID '93f9ac25c7956663'
10/01/2012 05:02:08 : INFO  : Run end  : Tue Jan 10 05:02:06 GMT 2012
