Phyre 2 Results for P45848

Email | l.a.kelley@imperial.ac.uk
Description | P45848
Date | Thu Jan 5 12:03:51 GMT 2012
Unique Job ID | 93f9ac25c7956663

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3kd4A_ |
|  | 87.5 | 9 | PDB header:hydrolase Chain: A: PDB Molecule:putative protease; PDBTitle: crystal structure of a putative protease (bdi_1141) from2 parabacteroides distasonis atcc 8503 at 2.00 a resolution
2 | d3b7sa2 |
|  | 72.1 | 9 | Fold:Leukotriene A4 hydrolase N-terminal domain Superfamily:Leukotriene A4 hydrolase N-terminal domain Family:Leukotriene A4 hydrolase N-terminal domain
3 | c3ebhA_ |
|  | 71.9 | 5 | PDB header:hydrolase inhibitor Chain: A: PDB Molecule:m1 family aminopeptidase; PDBTitle: structure of the m1 alanylaminopeptidase from malaria complexed with2 bestatin
4 | c3b7uX_ |
|  | 61.6 | 10 | PDB header:hydrolase Chain: X: PDB Molecule:leukotriene a-4 hydrolase; PDBTitle: leukotriene a4 hydrolase complexed with kelatorphan
5 | c2gtqA_ |
|  | 52.9 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase n; PDBTitle: crystal structure of aminopeptidase n from human pathogen neisseria2 meningitidis
6 | c3ciaA_ |
|  | 51.5 | 9 | PDB header:hydrolase Chain: A: PDB Molecule:cold-active aminopeptidase; PDBTitle: crystal structure of cold-aminopeptidase from colwellia2 psychrerythraea
7 | c2xpyA_ |
|  | 35.6 | 10 | PDB header:hydrolase Chain: A: PDB Molecule:leukotriene a-4 hydrolase; PDBTitle: structure of native leukotriene a4 hydrolase from saccharomyces2 cerevisiae
8 | d2etha1 |
|  | 33.5 | 13 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
9 | d1tkna_ |
|  | 28.9 | 12 | Fold:STAT-like Superfamily:CAPPD, an extracellular domain of amyloid beta A4 protein Family:CAPPD, an extracellular domain of amyloid beta A4 protein
10 | d1lj9a_ |
|  | 26.4 | 16 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
11 | d2fbha1 |
|  | 22.9 | 10 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
12 | c3hd7A_ |
|  | 21.8 | 8 | PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
13 | c3se6A_ |
|  | 19.7 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 2; PDBTitle: crystal structure of the human endoplasmic reticulum aminopeptidase 2
14 | c2i7uA_ |
|  | 19.5 | 100 | PDB header:de novo protein/ligand binding protein Chain: A: PDB Molecule:four-alpha-helix bundle; PDBTitle: structural and dynamical analysis of a four-alpha-helix2 bundle with designed anesthetic binding pockets
15 | c3nrvC_ |
|  | 18.3 | 13 | PDB header:transcription regulator Chain: C: PDB Molecule:putative transcriptional regulator (marr/emrr family); PDBTitle: crystal structure of marr/emrr family transcriptional regulator from2 acinetobacter sp. adp1
16 | d2a61a1 |
|  | 17.9 | 9 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
17 | c2rngA_ |
|  | 16.8 | 13 | PDB header:antimicrobial protein Chain: A: PDB Molecule:big defensin; PDBTitle: solution structure of big defensin
18 | c3g3zA_ |
|  | 15.3 | 12 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
19 | c2rh0B_ |
|  | 14.9 | 11 | PDB header:nuclear protein Chain: B: PDB Molecule:nudc domain-containing protein 2; PDBTitle: crystal structure of nudc domain-containing protein 22 (13542905) from mus musculus at 1.95 a resolution
20 | d1xp8a2 |
|  | 12.0 | 16 | Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain
21 | d1s3ja_ |
| not modelled | 11.1 | 7 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
22 | c3bj6B_ |
| not modelled | 11.0 | 11 | PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of marr family transcription regulator sp03579
23 | d1rw6a_ |
| not modelled | 10.9 | 12 | Fold:STAT-like Superfamily:CAPPD, an extracellular domain of amyloid beta A4 protein Family:CAPPD, an extracellular domain of amyloid beta A4 protein
24 | c3k66A_ |
| not modelled | 10.6 | 19 | PDB header:cell adhesion Chain: A: PDB Molecule:beta-amyloid-like protein; PDBTitle: x-ray crystal structure of the e2 domain of c. elegans apl-1
25 | c3bogC_ |
| not modelled | 10.3 | 87 | PDB header:antifreeze protein Chain: C: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein quasi-racemate
26 | c3bogD_ |
| not modelled | 10.3 | 87 | PDB header:antifreeze protein Chain: D: PDB Molecule:6.5 kda glycine-rich antifreeze protein; PDBTitle: snow flea antifreeze protein quasi-racemate
27 | c1z5hB_ |
| not modelled | 10.2 | 12 | PDB header:hydrolase Chain: B: PDB Molecule:tricorn protease interacting factor f3; PDBTitle: crystal structures of the tricorn interacting factor f32 from thermoplasma acidophilum
28 | c3bjaA_ |
| not modelled | 9.7 | 11 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family, putative; PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution
29 | c3ju0A_ |
| not modelled | 9.6 | 18 | PDB header:dna binding protein Chain: A: PDB Molecule:phage integrase; PDBTitle: structure of the arm-type binding domain of hai7 integrase
30 | c2zouB_ |
| not modelled | 9.2 | 21 | PDB header:cell adhesion Chain: B: PDB Molecule:spondin-1; PDBTitle: crystal struture of human f-spondin reeler domain (fragment 2)
31 | c2vn2B_ |
| not modelled | 9.0 | 19 | PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426
32 | d2v9va2 |
| not modelled | 7.9 | 15 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal fragment of elongation factor SelB
33 | c3cwcB_ |
| not modelled | 7.8 | 35 | PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2
34 | c3jtzA_ |
| not modelled | 7.4 | 21 | PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: structure of the arm-type binding domain of hpi integrase
35 | c1cn3F_ |
| not modelled | 7.1 | 88 | PDB header:viral protein Chain: F: PDB Molecule:fragment of coat protein vp2; PDBTitle: interaction of polyomavirus internal protein vp2 with major2 capsid protein vp1 and implications for participation of3 vp2 in viral entry
36 | c2fl8N_ |
| not modelled | 6.6 | 10 | PDB header:virus/viral protein Chain: N: PDB Molecule:baseplate structural protein gp10; PDBTitle: fitting of the gp10 trimer structure into the cryoem map of the2 bacteriophage t4 baseplate in the hexagonal conformation.
37 | c2pqnB_ |
| not modelled | 6.6 | 27 | PDB header:apoptosis Chain: B: PDB Molecule:mitochondrial division protein 1; PDBTitle: crystal structure of yeast fis1 complexed with a fragment of yeast2 mdv1
38 | c3c5pF_ |
| not modelled | 6.6 | 16 | PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein bas0735 of unknown function; PDBTitle: crystal structure of bas0735, a protein of unknown function from2 bacillus anthracis str. sterne
39 | c3cooB_ |
| not modelled | 6.4 | 21 | PDB header:cell adhesion Chain: B: PDB Molecule:spondin-1; PDBTitle: the crystal structure of reelin-n domain of f-spondin
40 | c2oq0D_ |
| not modelled | 6.3 | 16 | PDB header:protein binding Chain: D: PDB Molecule:gamma-interferon-inducible protein ifi-16; PDBTitle: crystal structure of the first hin-200 domain of interferon-inducible2 protein 16
41 | c3pa8A_ |
| not modelled | 6.2 | 9 | PDB header:toxin/peptide inhibitor Chain: A: PDB Molecule:toxin b; PDBTitle: structure of the c. difficile tcdb cysteine protease domain in complex2 with a peptide inhibitor
42 | c2l3nA_ |
| not modelled | 6.2 | 53 | PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein rap1, telomere length regulator taz1; PDBTitle: solution structure of rap1-taz1 fusion protein
43 | c2rddB_ |
| not modelled | 6.0 | 7 | PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
44 | c2khuA_ |
| not modelled | 6.0 | 25 | PDB header:transferase/protein binding Chain: A: PDB Molecule:immunoglobulin g-binding protein g, dna PDBTitle: solution structure of the ubiquitin-binding motif of human2 polymerase iota
45 | c2l0gA_ |
| not modelled | 5.9 | 25 | PDB header:protein binding Chain: A: PDB Molecule:dna polymerase iota; PDBTitle: solution nmr structure of ubiquitin-binding motif (ubm2) of human2 polymerase iota
46 | c3pmrB_ |
| not modelled | 5.9 | 27 | PDB header:cell adhesion Chain: B: PDB Molecule:amyloid-like protein 1; PDBTitle: crystal structure of e2 domain of human amyloid precursor-like protein2 1
47 | d2hyma1 |
| not modelled | 5.8 | 9 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III
48 | c2nnnB_ |
| not modelled | 5.8 | 12 | PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulator; PDBTitle: crystal structure of probable transcriptional regulator from2 pseudomonas aeruginosa
49 | d1wfia_ |
| not modelled | 5.6 | 7 | Fold:HSP20-like chaperones Superfamily:HSP20-like chaperones Family:Nuclear movement domain
50 | c3n39D_ |
| not modelled | 5.5 | 14 | PDB header:oxidoreductase Chain: D: PDB Molecule:protein nrdi; PDBTitle: ribonucleotide reductase dimanganese(ii)-nrdf from escherichia coli in2 complex with nrdi
51 | c2x8kB_ |
| not modelled | 5.3 | 12 | PDB header:viral protein Chain: B: PDB Molecule:hypothetical protein 19.1; PDBTitle: crystal structure of spp1 dit (gp 19.1) protein, a paradigm2 of hub adsorption apparatus in gram-positive infecting3 phages.
52 | c2o30A_ |
| not modelled | 5.3 | 9 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nuclear movement protein; PDBTitle: nuclear movement protein from e. cuniculi gb-m1
53 | c2kncA_ |
| not modelled | 5.3 | 18 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
54 | c2jo1A_ |
| not modelled | 5.3 | 23 | PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
55 | c1kn7A_ |
| not modelled | 5.2 | 30 | PDB header:membrane protein Chain: A: PDB Molecule:voltage-gated potassium channel protein kv1.4; PDBTitle: solution structure of the tandem inactivation domain2 (residues 1-75) of potassium channel rck4 (kv1.4)
56 | d1ubea2 |
| not modelled | 5.2 | 16 | Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain
57 | d1mo6a2 |
| not modelled | 5.1 | 16 | Fold:Anti-LPS factor/recA domain Superfamily:RecA protein, C-terminal domain Family:RecA protein, C-terminal domain
58 | c2qwwB_ |
| not modelled | 5.0 | 13 | PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of multiple antibiotic-resistance repressor (marr)2 (yp_013417.1) from listeria monocytogenes 4b f2365 at 2.07 a3 resolution