Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP36649
DateThu Jan 5 11:53:29 GMT 2012
Unique Job ID9359099dfc5d2215

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2fqeA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:blue copper oxidase cueo;
PDBTitle: crystal structures of e. coli laccase cueo under different2 copper binding situations
Confidence and coverage
Confidence:100.0% Coverage: 90%
463 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDARNRIQLTIGAGQSTFG
Secondary structure 
SS confidence 
Disorder  ??
????????????????
???????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  GKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEVDGGPQGIIP
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  PGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDD
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  VPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCN
Secondary structure 
SS confidence 
Disorder 
????
?????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  ARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPV
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  SQMGMAIAPFDKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQLSMDPMLD
Secondary structure 
SS confidence 
Disorder  ??????????????
?
???????????????????????
???????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  MMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAFDMNKP
Secondary structure 
SS confidence 
Disorder  ???????????
??
???
????
?
?
?
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  MFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNVS
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........490.........500.........510......
Sequence  EVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV
Secondary structure 
SS confidence 
Disorder 
??
?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2fqe chain A

3D model

Region: 31 - 516
Aligned: 463
Modelled: 463
Confidence: 100.0%
Identity: 99%
PDB header:oxidoreductase
Chain: A: PDB Molecule:blue copper oxidase cueo;
PDBTitle: crystal structures of e. coli laccase cueo under different2 copper binding situations

Phyre2

PDB 2yxw chain B

3D model

Region: 31 - 516
Aligned: 438
Modelled: 438
Confidence: 100.0%
Identity: 100%
PDB header:oxidoreductase
Chain: B: PDB Molecule:blue copper oxidase cueo;
PDBTitle: the deletion mutant of multicopper oxidase cueo

Phyre2

PDB 3abg chain A

3D model

Region: 23 - 516
Aligned: 444
Modelled: 451
Confidence: 100.0%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:bilirubin oxidase;
PDBTitle: x-ray crystal analysis of bilirubin oxidase from myrothecium2 verrucaria at 2.3 angstrom resolution using a twin crystal

Phyre2

PDB 3zx1 chain A

3D model

Region: 18 - 516
Aligned: 453
Modelled: 466
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, putative;
PDBTitle: multicopper oxidase from campylobacter jejuni: a metallo-oxidase

Phyre2

PDB 2uxt chain A

3D model

Region: 30 - 516
Aligned: 416
Modelled: 423
Confidence: 100.0%
Identity: 34%
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein sufi;
PDBTitle: sufi protein from escherichia coli

Phyre2

PDB 1zpu chain E

3D model

Region: 45 - 516
Aligned: 450
Modelled: 472
Confidence: 100.0%
Identity: 19%
PDB header:oxidoreductase
Chain: E: PDB Molecule:iron transport multicopper oxidase fet3;
PDBTitle: crystal structure of fet3p, a multicopper oxidase that functions in2 iron import

Phyre2

PDB 2g23 chain G

3D model

Region: 23 - 516
Aligned: 480
Modelled: 492
Confidence: 100.0%
Identity: 27%
PDB header:oxidoreductase
Chain: G: PDB Molecule:phenoxazinone synthase;
PDBTitle: the crystal structure of hexameric phenoxazinone synthase

Phyre2

PDB 1of0 chain A

3D model

Region: 26 - 516
Aligned: 441
Modelled: 446
Confidence: 100.0%
Identity: 29%
PDB header:oxidoreductase
Chain: A: PDB Molecule:spore coat protein a;
PDBTitle: crystal structure of bacillus subtilis cota after 1h2 soaking with ebs

Phyre2

PDB 2xu9 chain A

3D model

Region: 31 - 516
Aligned: 436
Modelled: 459
Confidence: 100.0%
Identity: 33%
PDB header:oxidoreductase
Chain: A: PDB Molecule:laccase;
PDBTitle: crystal structure of laccase from thermus thermophilus hb27

Phyre2

PDB 3pps chain D

3D model

Region: 41 - 516
Aligned: 449
Modelled: 471
Confidence: 100.0%
Identity: 24%
PDB header:oxidoreductase
Chain: D: PDB Molecule:laccase;
PDBTitle: crystal structure of an ascomycete fungal laccase from thielavia2 arenaria

Phyre2

PDB 2q9o chain A

3D model

Region: 41 - 516
Aligned: 450
Modelled: 473
Confidence: 100.0%
Identity: 22%
PDB header:oxidoreductase
Chain: A: PDB Molecule:laccase-1;
PDBTitle: near-atomic resolution structure of a melanocarpus albomyces laccase

Phyre2

PDB 1gyc chain A

3D model

Region: 47 - 516
Aligned: 447
Modelled: 453
Confidence: 100.0%
Identity: 17%
PDB header:oxidoreductase
Chain: A: PDB Molecule:laccase 2;
PDBTitle: crystal structure determination at room temperature of a2 laccase from trametes versicolor in its oxidised form3 containing a full complement of copper ions

Phyre2

PDB 1v10 chain A

3D model

Region: 44 - 516
Aligned: 448
Modelled: 467
Confidence: 100.0%
Identity: 20%
PDB header:oxidase
Chain: A: PDB Molecule:laccase;
PDBTitle: structure of rigidoporus lignosus laccase from hemihedrally2 twinned crystals

Phyre2

PDB 1a65 chain A

3D model

Region: 48 - 516
Aligned: 450
Modelled: 463
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:laccase;
PDBTitle: type-2 cu-depleted laccase from coprinus cinereus

Phyre2

PDB 1asq chain B

3D model

Region: 43 - 516
Aligned: 457
Modelled: 469
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: B: PDB Molecule:ascorbate oxidase;
PDBTitle: x-ray structures and mechanistic implications of three functional2 derivatives of ascorbate oxidase from zucchini: reduced-, peroxide-,3 and azide-forms

Phyre2

PDB 3aw5 chain A

3D model

Region: 52 - 516
Aligned: 415
Modelled: 422
Confidence: 100.0%
Identity: 31%
PDB header:oxidoreductase
Chain: A: PDB Molecule:multicopper oxidase;
PDBTitle: structure of a multicopper oxidase from the hyperthermophilic archaeon2 pyrobaculum aerophilum

Phyre2

PDB 3cdz chain A

3D model

Region: 70 - 516
Aligned: 417
Modelled: 447
Confidence: 100.0%
Identity: 15%
PDB header:blood clotting
Chain: A: PDB Molecule:coagulation factor viii heavy chain;
PDBTitle: crystal structure of human factor viii

Phyre2

PDB 1kcw chain A

3D model

Region: 72 - 516
Aligned: 422
Modelled: 445
Confidence: 100.0%
Identity: 15%
PDB header:oxidoreductase
Chain: A: PDB Molecule:ceruloplasmin;
PDBTitle: x-ray crystal structure of human ceruloplasmin at 3.0 angstroms

Phyre2

PDB 3g5w chain C

3D model

Region: 45 - 349
Aligned: 293
Modelled: 305
Confidence: 100.0%
Identity: 21%
PDB header:metal binding protein
Chain: C: PDB Molecule:multicopper oxidase type 1;
PDBTitle: crystal structure of blue copper oxidase from nitrosomonas europaea

Phyre2

PDB 2zwn chain A

3D model

Region: 44 - 342
Aligned: 287
Modelled: 299
Confidence: 100.0%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:two-domain type laccase;
PDBTitle: crystal structure of the novel two-domain type laccase from a2 metagenome

Phyre2

PDB 2e76 chain D

3D model

Region: 1 - 44
Aligned: 44
Modelled: 44
Confidence: 85.0%
Identity: 16%
PDB header:photosynthesis
Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus

Phyre2
1
c2fqeA_
2
c2yxwB_
3
c3abgA_
4
c3zx1A_
5
c2uxtA_
6
c1zpuE_
7
c2g23G_
8
c1of0A_
9
c2xu9A_
10
c3ppsD_
11
c2q9oA_
12
c1gycA_
13
c1v10A_
14
c1a65A_
15
c1asqB_
16
c3aw5A_
17
c3cdzA_
18
c1kcwA_
19
c3g5wC_
20
c2zwnA_
21
22
23
24
25
26
27
28
29
30
31
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c2e76D_
128
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2fqeA_
100.0 99 PDB header:oxidoreductase
Chain: A: PDB Molecule:blue copper oxidase cueo;
PDBTitle: crystal structures of e. coli laccase cueo under different2 copper binding situations
2c2yxwB_
100.0 100 PDB header:oxidoreductase
Chain: B: PDB Molecule:blue copper oxidase cueo;
PDBTitle: the deletion mutant of multicopper oxidase cueo
3c3abgA_
100.0 26 PDB header:oxidoreductase
Chain: A: PDB Molecule:bilirubin oxidase;
PDBTitle: x-ray crystal analysis of bilirubin oxidase from myrothecium2 verrucaria at 2.3 angstrom resolution using a twin crystal
4c3zx1A_
100.0 27 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, putative;
PDBTitle: multicopper oxidase from campylobacter jejuni: a metallo-oxidase
5c2uxtA_
100.0 34 PDB header:oxidoreductase
Chain: A: PDB Molecule:protein sufi;
PDBTitle: sufi protein from escherichia coli
6c1zpuE_
100.0 19 PDB header:oxidoreductase
Chain: E: PDB Molecule:iron transport multicopper oxidase fet3;
PDBTitle: crystal structure of fet3p, a multicopper oxidase that functions in2 iron import
7c2g23G_
100.0 27 PDB header:oxidoreductase
Chain: G: PDB Molecule:phenoxazinone synthase;
PDBTitle: the crystal structure of hexameric phenoxazinone synthase
8c1of0A_
100.0 29 PDB header:oxidoreductase
Chain: A: PDB Molecule:spore coat protein a;
PDBTitle: crystal structure of bacillus subtilis cota after 1h2 soaking with ebs
9c2xu9A_
100.0 33 PDB header:oxidoreductase
Chain: A: PDB Molecule:laccase;
PDBTitle: crystal structure of laccase from thermus thermophilus hb27
10c3ppsD_
100.0 24 PDB header:oxidoreductase
Chain: D: PDB Molecule:laccase;
PDBTitle: crystal structure of an ascomycete fungal laccase from thielavia2 arenaria
11c2q9oA_
100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:laccase-1;
PDBTitle: near-atomic resolution structure of a melanocarpus albomyces laccase
12c1gycA_
100.0 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:laccase 2;
PDBTitle: crystal structure determination at room temperature of a2 laccase from trametes versicolor in its oxidised form3 containing a full complement of copper ions
13c1v10A_
100.0 20 PDB header:oxidase
Chain: A: PDB Molecule:laccase;
PDBTitle: structure of rigidoporus lignosus laccase from hemihedrally2 twinned crystals
14c1a65A_
100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:laccase;
PDBTitle: type-2 cu-depleted laccase from coprinus cinereus
15c1asqB_
100.0 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:ascorbate oxidase;
PDBTitle: x-ray structures and mechanistic implications of three functional2 derivatives of ascorbate oxidase from zucchini: reduced-, peroxide-,3 and azide-forms
16c3aw5A_
100.0 31 PDB header:oxidoreductase
Chain: A: PDB Molecule:multicopper oxidase;
PDBTitle: structure of a multicopper oxidase from the hyperthermophilic archaeon2 pyrobaculum aerophilum
17c3cdzA_
100.0 15 PDB header:blood clotting
Chain: A: PDB Molecule:coagulation factor viii heavy chain;
PDBTitle: crystal structure of human factor viii
18c1kcwA_
100.0 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:ceruloplasmin;
PDBTitle: x-ray crystal structure of human ceruloplasmin at 3.0 angstroms
19c3g5wC_
100.0 21 PDB header:metal binding protein
Chain: C: PDB Molecule:multicopper oxidase type 1;
PDBTitle: crystal structure of blue copper oxidase from nitrosomonas europaea
20c2zwnA_
100.0 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:two-domain type laccase;
PDBTitle: crystal structure of the novel two-domain type laccase from a2 metagenome
21c2zooA_
not modelled 100.0 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable nitrite reductase;
PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125
22c1kbwA_
not modelled 100.0 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:major outer membrane protein pan 1;
PDBTitle: crystal structure of the soluble domain of ania from2 neisseria gonorrhoeae
23c3gdcC_
not modelled 100.0 25 PDB header:oxidoreductase
Chain: C: PDB Molecule:multicopper oxidase;
PDBTitle: crystal structure of multicopper oxidase
24c1wa1X_
not modelled 100.0 15 PDB header:reductase
Chain: X: PDB Molecule:dissimilatory copper-containing nitrite
PDBTitle: crystal structure of h313q mutant of alcaligenes2 xylosoxidans nitrite reductase
25c3cdzB_
not modelled 100.0 20 PDB header:blood clotting
Chain: B: PDB Molecule:coagulation factor viii light chain;
PDBTitle: crystal structure of human factor viii
26c2r7eB_
not modelled 100.0 20 PDB header:blood clotting
Chain: B: PDB Molecule:coagulation factor viii;
PDBTitle: crystal structure analysis of coagulation factor viii
27c1mzzC_
not modelled 100.0 15 PDB header:oxidoreductase
Chain: C: PDB Molecule:copper-containing nitrite reductase;
PDBTitle: crystal structure of mutant (m182t)of nitrite reductase
28c2dv6F_
not modelled 100.0 29 PDB header:oxidoreductase
Chain: F: PDB Molecule:nitrite reductase;
PDBTitle: crystal structure of nitrite reductase from hyphomicrobium2 denitrificans
29c1aq8B_
not modelled 100.0 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrite reductase;
PDBTitle: structure of alcaligenes faecalis nitrite reductase reduced2 with ascorbate
30c1sddB_
not modelled 100.0 22 PDB header:blood clotting
Chain: B: PDB Molecule:coagulation factor v;
PDBTitle: crystal structure of bovine factor vai
31c3cg8B_
not modelled 100.0 28 PDB header:oxidoreductase
Chain: B: PDB Molecule:laccase;
PDBTitle: laccase from streptomyces coelicolor
32c3kw8A_
not modelled 100.0 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative copper oxidase;
PDBTitle: two-domain laccase from streptomyces coelicolor at 2.3 a resolution
33c1sddA_
not modelled 100.0 19 PDB header:blood clotting
Chain: A: PDB Molecule:coagulation factor v;
PDBTitle: crystal structure of bovine factor vai
34d1kv7a1
not modelled 100.0 100 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
35d1gska1
not modelled 100.0 30 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
36d1v10a1
not modelled 100.0 27 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
37d1gyca1
not modelled 100.0 25 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
38d1kv7a3
not modelled 100.0 94 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
39d1aoza1
not modelled 100.0 27 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
40d1oe1a1
not modelled 100.0 19 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
41d2q9oa1
not modelled 100.0 28 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
42d2bw4a1
not modelled 100.0 18 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
43d1hfua1
not modelled 100.0 30 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
44d1mzya1
not modelled 100.0 17 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
45d1kyaa1
not modelled 100.0 28 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
46d1kv7a2
not modelled 100.0 100 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
47d1kbva1
not modelled 100.0 20 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
48d1hfua3
not modelled 100.0 16 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
49d1snra1
not modelled 100.0 17 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
50d1gska3
not modelled 100.0 29 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
51d1ndsa1
not modelled 100.0 17 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
52d1sdda1
not modelled 100.0 16 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
53d1kyaa3
not modelled 100.0 15 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
54d1gska2
not modelled 100.0 22 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
55d2q9oa3
not modelled 100.0 27 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
56d1gyca3
not modelled 100.0 15 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
57d1v10a3
not modelled 100.0 18 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
58d1aoza3
not modelled 100.0 19 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
59d2j5wa3
not modelled 99.9 19 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
60d1aoza2
not modelled 99.9 22 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
61d1hfua2
not modelled 99.9 20 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
62d2q9oa2
not modelled 99.9 21 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
63d2j5wa1
not modelled 99.9 28 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
64d1kyaa2
not modelled 99.9 18 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
65d1gyca2
not modelled 99.9 15 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
66d2j5wa4
not modelled 99.9 19 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
67d1v10a2
not modelled 99.9 22 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
68d1sddb2
not modelled 99.9 16 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
69d2j5wa5
not modelled 99.9 26 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
70d2j5wa2
not modelled 99.8 21 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
71d1kbva2
not modelled 99.8 19 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
72d1kcwa2
not modelled 99.8 21 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
73d1snra2
not modelled 99.8 18 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
74d1e30a_
not modelled 99.8 16 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
75d1ndsa2
not modelled 99.8 18 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
76d2bw4a2
not modelled 99.8 19 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
77d1mzya2
not modelled 99.8 19 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
78d1ibya_
not modelled 99.6 21 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Nitrosocyanin
79c2aanA_
not modelled 99.6 17 PDB header:electron transport
Chain: A: PDB Molecule:auracyanin a;
PDBTitle: auracyanin a: a "blue" copper protein from the green thermophilic2 photosynthetic bacterium,chloroflexus aurantiacus
80d1fwxa1
not modelled 99.5 19 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Nitrosocyanin
81d1qhqa_
not modelled 99.5 16 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
82d1qnia1
not modelled 99.4 22 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Nitrosocyanin
83d1sddb1
not modelled 99.3 14 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
84d1sdda2
not modelled 99.2 12 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
85d1plaa_
not modelled 99.0 13 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
86d1ag6a_
not modelled 99.0 21 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
87d2q5ba1
not modelled 98.9 26 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
88d2plta_
not modelled 98.9 16 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
89d1jzga_
not modelled 98.7 14 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
90d1joia_
not modelled 98.7 13 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
91d2ccwa1
not modelled 98.7 18 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
92d1pcsa_
not modelled 98.6 20 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
93d2jxma1
not modelled 98.6 13 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
94d1iuza_
not modelled 98.6 12 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
95c3sbrF_
not modelled 98.6 20 PDB header:oxidoreductase
Chain: F: PDB Molecule:nitrous-oxide reductase;
PDBTitle: pseudomonas stutzeri nitrous oxide reductase, p1 crystal form with2 substrate
96d1bypa_
not modelled 98.5 25 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
97d9pcya_
not modelled 98.5 24 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
98d7pcya_
not modelled 98.4 9 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
99d2cj3a1
not modelled 98.4 21 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
100d1cuoa_
not modelled 98.3 18 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
101d1bxua_
not modelled 98.3 21 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
102c2iwkB_
not modelled 98.3 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrous oxide reductase;
PDBTitle: inhibitor-bound form of nitrous oxide reductase from2 achromobacter cycloclastes at 1.7 angstrom resolution
103c2h47C_
not modelled 98.2 14 PDB header:oxidoreductase/electron transport
Chain: C: PDB Molecule:azurin;
PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1)
104d1oe1a2
not modelled 98.2 17 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
105d1kdja_
not modelled 98.2 13 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
106d1cc3a_
not modelled 98.0 21 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
107d1id2a_
not modelled 98.0 19 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
108c3c75B_
not modelled 98.0 19 PDB header:oxidoreductase
Chain: B: PDB Molecule:amicyanin;
PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin
109c3ef4A_
not modelled 98.0 16 PDB header:electron transport
Chain: A: PDB Molecule:blue copper protein;
PDBTitle: crystal structure of native pseudoazurin from2 hyphomicrobium denitrificans
110d2cuaa_
not modelled 98.0 16 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
111d1paza_
not modelled 98.0 15 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
112d1azca_
not modelled 97.9 15 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
113d1plca_
not modelled 97.9 18 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
114d1bqka_
not modelled 97.8 18 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
115d2ov0a1
not modelled 97.8 20 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
116c1qniE_
not modelled 97.8 22 PDB header:oxidoreductase
Chain: E: PDB Molecule:nitrous-oxide reductase;
PDBTitle: crystal structure of nitrous oxide reductase from2 pseudomonas nautica, at 2.4a resolution
117d1pmya_
not modelled 97.8 22 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
118d1adwa_
not modelled 97.6 21 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
119d1nwpa_
not modelled 97.6 23 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
120d1rkra_
not modelled 97.5 19 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0