Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	Y	R	S	L	T	L	D	D	F	L	S	R	F	Q	L	L	R	P	Q	I	N	R	E	T	L	N	H	R	Q	A	A	V	L	I	P	I	V	R	R	P	Q	P	G	L	L	L	T	Q	R	S	I	H	L	R	K	H	A	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?										?	?	?	?	?	?	?	?	?	?	?	?	?																								?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	V	A	F	P	G	G	A	V	D	D	T	D	A	S	A	I	A	A	A	L	R	E	A	E	E	E	V	A	I	P	P	S	A	V	E	V	I	G	V	L	P	P	V	D	S	V	T	G	Y	Q	V	T	P	V	V	G	I	I	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		P	D	L	P	Y	R	A	S	E	D	E	V	S	A	V	F	E	M	P	L	A	Q	A	L	H	L	G	R	Y	H	P	L	D	I	Y	R	R	G	D	S	H	R	V	W	L	S	W	Y	E	Q	Y	F	V	W	G	M	T	A	G	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.
Sequence		I	R	E	L	A	L	Q	I	G	V	K	P
Secondary structure
SS confidence
Disorder											?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1nqz chain A Region: 20 - 186 Aligned: 159 Modelled: 167 Confidence: 100.0% Identity: 36% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2fkb chain A domain 1 Region: 20 - 150 Aligned: 127 Modelled: 131 Confidence: 99.8% Identity: 20% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 3gz8 chain C Region: 32 - 147 Aligned: 114 Modelled: 116 Confidence: 99.8% Identity: 27% PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose Phyre2 PDB 1hzt chain A Region: 29 - 143 Aligned: 111 Modelled: 115 Confidence: 99.8% Identity: 18% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 2fb1 chain A domain 2 Region: 32 - 145 Aligned: 111 Modelled: 114 Confidence: 99.8% Identity: 16% Fold: Nudix Superfamily: Nudix Family: BT0354 N-terminal domain-like Phyre2 PDB 1ppv chain A Region: 24 - 143 Aligned: 116 Modelled: 120 Confidence: 99.8% Identity: 18% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 2b0v chain A domain 1 Region: 29 - 143 Aligned: 110 Modelled: 113 Confidence: 99.8% Identity: 19% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3grn chain B Region: 28 - 145 Aligned: 115 Modelled: 118 Confidence: 99.8% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 Phyre2 PDB 3n77 chain B Region: 29 - 147 Aligned: 117 Modelled: 119 Confidence: 99.8% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 Phyre2 PDB 3gz6 chain A Region: 34 - 145 Aligned: 110 Modelled: 112 Confidence: 99.8% Identity: 28% PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna Phyre2 PDB 2gb5 chain B Region: 16 - 151 Aligned: 127 Modelled: 134 Confidence: 99.8% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution Phyre2 PDB 3dku chain B Region: 29 - 151 Aligned: 117 Modelled: 123 Confidence: 99.8% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 Phyre2 PDB 1vk6 chain A domain 2 Region: 30 - 151 Aligned: 114 Modelled: 122 Confidence: 99.8% Identity: 18% Fold: Nudix Superfamily: Nudix Family: NADH pyrophosphatase Phyre2 PDB 3h95 chain A Region: 33 - 151 Aligned: 109 Modelled: 116 Confidence: 99.8% Identity: 19% PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 Phyre2 PDB 3exq chain A Region: 26 - 145 Aligned: 117 Modelled: 120 Confidence: 99.8% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis Phyre2 PDB 1sjy chain A Region: 22 - 143 Aligned: 118 Modelled: 122 Confidence: 99.8% Identity: 22% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 1iry chain A Region: 28 - 177 Aligned: 144 Modelled: 148 Confidence: 99.8% Identity: 15% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 1vhz chain A Region: 29 - 145 Aligned: 113 Modelled: 117 Confidence: 99.8% Identity: 22% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3hhj chain A Region: 34 - 145 Aligned: 109 Modelled: 111 Confidence: 99.7% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae Phyre2 PDB 3ef5 chain A Region: 33 - 191 Aligned: 127 Modelled: 134 Confidence: 99.7% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp Phyre2 1 d1nqza_ 2 d2fkba1 3 c3gz8C_ 4 d1hzta_ 5 d2fb1a2 6 d1ppva_ 7 d2b0va1 8 c3grnB_ 9 c3n77B_ 10 c3gz6A_ 11 c2gb5B_ 12 c3dkuB_ 13 d1vk6a2 14 c3h95A_ 15 c3exqA_ 16 d1sjya_ 17 d1irya_ 18 d1vhza_ 19 c3hhjA_ 20 c3ef5A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1nqza_ 100.0 36 Fold:Nudix Superfamily:Nudix Family:MutT-like 2 d2fkba1 99.8 20 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 3 c3gz8C_ 99.8 27 PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose 4 d1hzta_ 99.8 18 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 5 d2fb1a2 99.8 16 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 6 d1ppva_ 99.8 18 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 7 d2b0va1 99.8 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 8 c3grnB_ 99.8 20 PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 9 c3n77B_ 99.8 16 PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 10 c3gz6A_ 99.8 28 PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna 11 c2gb5B_ 99.8 16 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 12 c3dkuB_ 99.8 13 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 13 d1vk6a2 99.8 18 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 14 c3h95A_ 99.8 19 PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 15 c3exqA_ 99.8 18 PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis 16 d1sjya_ 99.8 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 17 d1irya_ 99.8 15 Fold:Nudix Superfamily:Nudix Family:MutT-like 18 d1vhza_ 99.8 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 19 c3hhjA_ 99.7 20 PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae 20 c3ef5A_ 99.7 17 PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp 21 d1ktga_ not modelled 99.7 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 22 c2yvoA_ not modelled 99.7 23 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 23 d1g0sa_ not modelled 99.7 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 24 c3qsjA_ not modelled 99.7 35 PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius 25 d1puna_ not modelled 99.7 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 26 c2fb1A_ not modelled 99.7 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 27 d2o5fa1 not modelled 99.7 20 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 28 c2fvvA_ not modelled 99.7 17 PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1 29 d2fvva1 not modelled 99.7 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 30 c2yyhC_ not modelled 99.7 22 PDB header:hydrolase Chain: C: PDB Molecule:8-oxo-dgtpase domain; PDBTitle: crystal structure of nudix family protein from aquifex aeolicus 31 c2w4eA_ not modelled 99.7 24 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans 32 d1ryaa_ not modelled 99.7 19 Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD 33 c2kdvA_ not modelled 99.7 20 PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli 34 c3bm4B_ not modelled 99.7 23 PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr 35 c2i6kA_ not modelled 99.7 15 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 36 c3i9xA_ not modelled 99.7 29 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua 37 c3gg6A_ not modelled 99.7 18 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 38 d2fmla2 not modelled 99.7 21 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 39 c2o1cB_ not modelled 99.7 21 PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase 40 c2r5wA_ not modelled 99.7 21 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 41 c2jvbA_ not modelled 99.7 12 PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 42 c3cngC_ not modelled 99.7 16 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 43 d1xsba_ not modelled 99.7 23 Fold:Nudix Superfamily:Nudix Family:MutT-like 44 c3r03B_ not modelled 99.7 20 PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum 45 d2b06a1 not modelled 99.7 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 46 c3fjyB_ not modelled 99.7 19 PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis 47 c3sonB_ not modelled 99.7 15 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution 48 c3o8sA_ not modelled 99.7 19 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution 49 c2qkmF_ not modelled 99.7 17 PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex 50 c2qjoB_ not modelled 99.7 18 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 51 d2azwa1 not modelled 99.7 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 52 c3q4iA_ not modelled 99.7 14 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 53 c3id9B_ not modelled 99.7 14 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis 54 c3gwyA_ not modelled 99.7 20 PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis 55 c2pnyA_ not modelled 99.7 13 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 56 c3fk9B_ not modelled 99.7 19 PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans 57 c2pq1B_ not modelled 99.6 17 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 58 d1mqea_ not modelled 99.6 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 59 d1vcda1 not modelled 99.6 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 60 c3edsA_ not modelled 99.6 19 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis 61 d1jkna_ not modelled 99.6 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 62 c3f6aA_ not modelled 99.6 20 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 63 c2fmlB_ not modelled 99.6 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis 64 d1viua_ not modelled 99.6 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 65 d1v8ya_ not modelled 99.6 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 66 c2pqvA_ not modelled 99.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae 67 d2a6ta2 not modelled 99.6 17 Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like 68 c3q91D_ not modelled 99.6 21 PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) 69 d1u20a1 not modelled 99.6 27 Fold:Nudix Superfamily:Nudix Family:MutT-like 70 d1x51a1 not modelled 99.5 14 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 71 c3fcmA_ not modelled 99.5 15 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 72 d1k2ea_ not modelled 99.5 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 73 c3dupB_ not modelled 99.5 16 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 74 c3e57A_ not modelled 99.5 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein tm1382; PDBTitle: crystal structure of tm1382, a putative nudix hydrolase 75 c3f13A_ not modelled 99.5 18 PDB header:hydrolase Chain: A: PDB Molecule:putative nudix hydrolase family member; PDBTitle: crystal structure of putative nudix hydrolase family member2 from chromobacterium violaceum 76 c1rrqA_ not modelled 99.5 15 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 77 d1q33a_ not modelled 99.4 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 78 c3rh7A_ not modelled 99.4 12 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution 79 d1rrqa2 not modelled 99.4 16 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 80 c2j8qB_ not modelled 99.2 20 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 81 c3couA_ not modelled 98.7 27 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16; PDBTitle: crystal structure of human nudix motif 16 (nudt16) 82 c3kvhA_ not modelled 98.2 23 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 83 c3p5tE_ not modelled 94.8 20 PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex 84 d1aopa2 not modelled 33.2 19 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 85 d1zl8a1 not modelled 11.6 50 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 86 d1cmca_ not modelled 10.7 31 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Met repressor, MetJ (MetR) 87 d2w6ka1 not modelled 10.4 11 Fold:CobE/GbiG C-terminal domain-like Superfamily:CobE/GbiG C-terminal domain-like Family:CobE/GbiG C-terminal domain-like 88 c2eq8C_ not modelled 10.1 13 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp 89 d1y74a1 not modelled 10.0 50 Fold:L27 domain Superfamily:L27 domain Family:L27 domain 90 c3enoB_ not modelled 8.9 21 PDB header:hydrolase/unknown function Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase; PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1 91 c2eq7C_ not modelled 8.5 25 PDB header:oxidoreductase Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo 92 d1w4ha1 not modelled 7.4 31 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 93 c2cb4D_ not modelled 7.2 45 PDB header:toxin Chain: D: PDB Molecule:mosquitocidal toxin; PDBTitle: crystal structure of the catalytic domain of the2 mosquitocidal toxin from bacillus sphaericus, mutant e197q 94 c1w4kA_ not modelled 7.1 38 PDB header:transferase Chain: A: PDB Molecule:pyruvate dehydrogenase e2; PDBTitle: peripheral-subunit binding domains from mesophilic,2 thermophilic, and hyperthermophilic bacteria fold by3 ultrafast, apparently two-state transitions 95 d2cyua1 not modelled 7.1 31 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 96 d1w85i_ not modelled 7.1 19 Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 97 c3dv0I_ not modelled 7.1 19 PDB header:oxidoreductase/transferase Chain: I: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex 98 c2eq9C_ not modelled 6.6 38 PDB header:oxidoreductase Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb 99 c2cooA_ not modelled 6.6 38 PDB header:transferase Chain: A: PDB Molecule:lipoamide acyltransferase component of branched- PDBTitle: solution structure of the e3_binding domain of2 dihydrolipoamide branched chaintransacylase

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0