Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	H	L	L	P	L	A	L	L	F	S	G	I	S	P	A	Q	A	L	D	V	G	D	I	S	S	F	M	N	S	D	S	S	T	L	S	K	T	I	K	N	S	T	D	S	G	R	L	I	N	I	R	L	E	R	L	S	S
Secondary structure
SS confidence
Disorder		?	?	?												?	?	?	?	?												?	?	?	?	?													?												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	L	D	D	G	Q	V	I	S	M	D	K	P	D	E	L	L	L	T	P	A	S	L	L	L	P	A	Q	A	S	E	V	I	R	F	F	Y	K	G	P	A	D	E	K	E	R	Y	Y	R	I	V	W	F	D	Q	A	L	S	D	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?		?	?	?	?	?	?	?									?			?	?																														?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	R	D	N	A	N	R	S	A	V	A	T	A	S	A	R	I	G	T	I	L	V	V	A	P	R	Q	A	N	Y	H	F	Q	Y	A	N	G	S	L	T	N	T	G	N	A	T	L	R	I	L	A	Y	G	P	C	L	K	A	A	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?								?	?																		?	?																				?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Sequence		G	K	E	C	K	E	N	Y	Y	L	M	P	G	K	S	R	R	F	T	R	V	D	T	A	D	N	K	G	R	V	A	L	W	Q	G	D	K	F	I	P	V	K
Secondary structure
SS confidence
Disorder		?	?	?	?														?	?	?		?	?	?	?																?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1z9s chain A Region: 16 - 215 Aligned: 172 Modelled: 186 Confidence: 100.0% Identity: 16% PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex Phyre2 PDB 2co7 chain B Region: 16 - 215 Aligned: 171 Modelled: 190 Confidence: 100.0% Identity: 11% PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) Phyre2 PDB 3q48 chain B Region: 23 - 215 Aligned: 163 Modelled: 174 Confidence: 100.0% Identity: 13% PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone Phyre2 PDB 1qun chain A Region: 20 - 215 Aligned: 174 Modelled: 186 Confidence: 100.0% Identity: 14% PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli Phyre2 PDB 1l4i chain A Region: 20 - 215 Aligned: 165 Modelled: 186 Confidence: 100.0% Identity: 12% PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae Phyre2 PDB 1qpx chain A Region: 20 - 215 Aligned: 171 Modelled: 181 Confidence: 100.0% Identity: 11% PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers Phyre2 PDB 3f6i chain B Region: 20 - 215 Aligned: 167 Modelled: 186 Confidence: 99.9% Identity: 14% PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee Phyre2 PDB 1p5v chain A domain 1 Region: 15 - 148 Aligned: 109 Modelled: 116 Confidence: 99.9% Identity: 20% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2co7 chain B domain 1 Region: 16 - 148 Aligned: 114 Modelled: 133 Confidence: 99.9% Identity: 12% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2j2z chain A domain 1 Region: 20 - 151 Aligned: 118 Modelled: 128 Confidence: 99.9% Identity: 11% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 1 Region: 20 - 148 Aligned: 112 Modelled: 129 Confidence: 99.9% Identity: 13% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1l4i chain A domain 1 Region: 20 - 148 Aligned: 109 Modelled: 119 Confidence: 99.9% Identity: 10% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1m1s chain A Region: 18 - 121 Aligned: 88 Modelled: 89 Confidence: 97.9% Identity: 11% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1row chain A Region: 21 - 121 Aligned: 85 Modelled: 86 Confidence: 97.7% Identity: 12% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 2qsv chain A Region: 20 - 200 Aligned: 163 Modelled: 154 Confidence: 97.6% Identity: 16% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 Phyre2 PDB 1grw chain A Region: 15 - 145 Aligned: 116 Modelled: 116 Confidence: 97.2% Identity: 14% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 3bwu chain C domain 2 Region: 149 - 215 Aligned: 63 Modelled: 67 Confidence: 96.7% Identity: 14% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1z9o chain B Region: 21 - 119 Aligned: 84 Modelled: 84 Confidence: 96.6% Identity: 13% PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif Phyre2 PDB 1msp chain A Region: 19 - 122 Aligned: 89 Modelled: 89 Confidence: 95.9% Identity: 15% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 2e6j chain A Region: 13 - 112 Aligned: 88 Modelled: 100 Confidence: 95.5% Identity: 10% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydin protein; PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein Phyre2 1 c1z9sA_ 2 c2co7B_ 3 c3q48B_ 4 c1qunA_ 5 c1l4iA_ 6 c1qpxA_ 7 c3f6iB_ 8 d1p5va1 9 d2co7b1 10 d2j2za1 11 d3bwuc1 12 d1l4ia1 13 d1m1sa_ 14 d1rowa_ 15 c2qsvA_ 16 d1grwa_ 17 d3bwuc2 18 c1z9oB_ 19 d1mspa_ 20 c2e6jA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1z9sA_ 100.0 16 PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex 2 c2co7B_ 100.0 11 PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) 3 c3q48B_ 100.0 13 PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone 4 c1qunA_ 100.0 14 PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli 5 c1l4iA_ 100.0 12 PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae 6 c1qpxA_ 100.0 11 PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers 7 c3f6iB_ 99.9 14 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee 8 d1p5va1 99.9 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 9 d2co7b1 99.9 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 10 d2j2za1 99.9 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 11 d3bwuc1 99.9 13 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 12 d1l4ia1 99.9 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 13 d1m1sa_ 97.9 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 14 d1rowa_ 97.7 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 15 c2qsvA_ 97.6 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 16 d1grwa_ 97.2 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 17 d3bwuc2 96.7 14 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 18 c1z9oB_ 96.6 13 PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif 19 d1mspa_ 95.9 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 20 c2e6jA_ 95.5 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydin protein; PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein 21 c2ys4A_ not modelled 95.3 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog; PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human 22 d1wica_ not modelled 94.3 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 23 d1w8oa1 not modelled 94.2 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 24 d2j2za2 not modelled 94.0 12 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 25 c3o0lB_ not modelled 94.0 9 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 26 d1p5va2 not modelled 94.0 10 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 27 d2co7b2 not modelled 93.4 8 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 28 c3qbtH_ not modelled 91.7 17 PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp 29 d1l4ia2 not modelled 88.4 14 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 30 c3qisA_ not modelled 88.3 17 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: recognition of the f&h motif by the lowe syndrome protein ocrl 31 c2jwyA_ not modelled 84.7 17 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yaji; PDBTitle: solution nmr structure of uncharacterized lipoprotein yaji from2 escherichia coli. northeast structural genomics target er540 32 c3ac0B_ not modelled 80.8 14 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 33 d2vzsa2 not modelled 75.7 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 34 c2x41A_ not modelled 71.2 13 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 35 c1l9mB_ not modelled 65.9 13 PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation 36 c3isyA_ not modelled 59.2 10 PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution 37 c2r39A_ not modelled 51.3 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:fixg-related protein; PDBTitle: crystal structure of fixg-related protein from vibrio parahaemolyticus 38 c3cfuA_ not modelled 47.2 16 PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562 39 d1exha_ not modelled 47.1 14 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Carbohydrate-binding domain Family:Cellulose-binding domain family II 40 d1yq2a1 not modelled 45.7 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 41 d1ufga_ not modelled 45.7 14 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 42 c2lllA_ not modelled 44.8 9 PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a 43 d4ubpb_ not modelled 44.1 11 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 44 d1e9ya1 not modelled 43.6 15 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 45 c3qgaD_ not modelled 38.0 11 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 46 c3jt0B_ not modelled 37.8 13 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a 47 c2kl6A_ not modelled 37.1 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the cardb domain of pf1109 from2 pyrococcus furiosus. northeast structural genomics3 consortium target pfr193a 48 d1ejxb_ not modelled 32.1 17 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 49 d1ifra_ not modelled 31.9 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 50 c1yewI_ not modelled 26.9 17 PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase 51 d1hmja_ not modelled 26.7 26 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 52 c3rgbA_ not modelled 26.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath) 53 d2uubs1 not modelled 23.7 29 Fold:Ribosomal protein S19 Superfamily:Ribosomal protein S19 Family:Ribosomal protein S19 54 d2gy9s1 not modelled 23.3 29 Fold:Ribosomal protein S19 Superfamily:Ribosomal protein S19 Family:Ribosomal protein S19 55 d1ivta_ not modelled 20.2 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 56 d1vjja2 not modelled 19.4 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 57 c3bbnS_ not modelled 18.4 23 PDB header:ribosome Chain: S: PDB Molecule:ribosomal protein s19; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 58 d1kyaa2 not modelled 18.3 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 59 c1s1hS_ not modelled 17.8 29 PDB header:ribosome Chain: S: PDB Molecule:40s ribosomal protein s15; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 60 d2cj3a1 not modelled 16.0 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 61 c3rfrI_ not modelled 15.6 15 PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m 62 c2zkqs_ not modelled 15.4 29 PDB header:ribosomal protein/rna Chain: S: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 63 c3ndyG_ not modelled 15.4 17 PDB header:hydrolase Chain: G: PDB Molecule:endoglucanase d; PDBTitle: the structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 64 c2xzmS_ not modelled 14.5 29 PDB header:ribosome Chain: S: PDB Molecule:rps15e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 65 c1e9zA_ not modelled 14.3 25 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 66 c2je8B_ not modelled 12.9 10 PDB header:hydrolase Chain: B: PDB Molecule:beta-mannosidase; PDBTitle: structure of a beta-mannosidase from bacteroides2 thetaiotaomicron 67 d1plaa_ not modelled 12.7 25 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 68 d1eika_ not modelled 12.6 24 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 69 d1bxua_ not modelled 12.1 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 70 d2q5ba1 not modelled 12.0 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 71 d1pcsa_ not modelled 11.4 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 72 c3mdjB_ not modelled 11.3 10 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:endoplasmic reticulum aminopeptidase 1; PDBTitle: er aminopeptidase, erap1, bound to the zinc aminopeptidase inhibitor,2 bestatin 73 d1gyca2 not modelled 11.1 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 74 d1bqka_ not modelled 10.9 22 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 75 d9pcya_ not modelled 10.8 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 76 c2f1eA_ not modelled 10.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein apag; PDBTitle: solution structure of apag protein 77 d1dzfa2 not modelled 9.7 25 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 78 d1ag6a_ not modelled 9.5 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 79 d1g0da2 not modelled 9.4 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 80 d1hfua2 not modelled 9.3 5 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 81 d1plca_ not modelled 9.1 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 82 c2kutA_ not modelled 9.0 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of gmr58a from geobacter metallireducens.2 northeast structural genomics consortium target gmr58a 83 d1aoza2 not modelled 8.8 10 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 84 d1hc1a3 not modelled 8.7 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Arthropod hemocyanin, C-terminal domain 85 d1v7wa2 not modelled 8.6 16 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:Glycosyltransferase family 36 N-terminal domain 86 d7pcya_ not modelled 8.3 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 87 c2pmzV_ not modelled 8.1 25 PDB header:translation, transferase Chain: V: PDB Molecule:dna-directed rna polymerase subunit h; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 88 c1pzdA_ not modelled 7.6 15 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:coatomer gamma subunit; PDBTitle: structural identification of a conserved appendage domain2 in the carboxyl-terminus of the copi gamma-subunit. 89 d3pmga4 not modelled 7.6 11 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 90 d2jxma1 not modelled 7.4 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 91 c3qnfA_ not modelled 7.4 12 PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 1; PDBTitle: crystal structure of the open state of human endoplasmic reticulum2 aminopeptidase 1 erap1 92 d1ex0a2 not modelled 7.2 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 93 d1v10a2 not modelled 6.9 10 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 94 d1pmya_ not modelled 6.6 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 95 d1adwa_ not modelled 6.6 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 96 d1bypa_ not modelled 6.5 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 97 d2plta_ not modelled 6.5 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 98 d1nc7a_ not modelled 5.9 21 Fold:Hypothetical protein TM1070 Superfamily:Hypothetical protein TM1070 Family:Hypothetical protein TM1070 99 c3izbR_ not modelled 5.6 31 PDB header:ribosome Chain: R: PDB Molecule:40s ribosomal protein rps15 (s19p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0