Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	N	R	T	L	A	D	L	D	R	V	V	A	L	G	G	G	H	G	L	G	R	V	L	S	S	L	S	S	L	G	S	R	L	T	G	I	V	T	T	T	D	N	G	G	S	T	G	R	I	R	R	S	E	G	G	I	A	W
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	D	M	R	N	C	L	N	Q	L	I	T	E	P	S	V	A	S	A	M	F	E	Y	R	F	G	G	N	G	E	L	S	G	H	N	L	G	N	L	M	L	K	A	L	D	H	L	S	V	R	P	L	E	A	I	N	L	I	R	N
Secondary structure
SS confidence
Disorder																												?	?	?																		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	L	K	V	D	T	H	L	I	P	M	S	E	H	P	V	D	L	M	A	I	D	D	Q	G	H	E	V	Y	G	E	V	N	I	D	Q	L	T	T	P	I	Q	E	L	L	L	T	P	N	V	P	A	T	R	E	A	V	H	A	I
Secondary structure
SS confidence
Disorder																																				?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		N	E	A	D	L	I	I	I	G	P	G	S	F	Y	T	S	L	M	P	I	L	L	L	K	E	I	A	Q	A	L	R	R	T	P	A	P	M	V	Y	I	G	N	L	G	R	E	L	S	L	P	A	A	N	L	K	L	E	S	K	L
Secondary structure
SS confidence
Disorder																																												?		?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	I	M	E	Q	Y	V	G	K	K	V	I	D	A	V	I	V	G	P	K	V	D	V	S	A	V	K	E	R	I	V	I	Q	E	V	L	E	A	S	D	I	P	Y	R	H	D	R	Q	L	L	H	N	A	L	E	K	A	L	Q	A
Secondary structure
SS confidence
Disorder																						?	?	?	?									?				?				?		?
Disorder confidence
		.	.
Sequence		L	G
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2hzb chain A domain 1 Region: 8 - 296 Aligned: 288 Modelled: 289 Confidence: 100.0% Identity: 30% Fold: CofD-like Superfamily: CofD-like Family: CofD-like Phyre2 PDB 2ppv chain A Region: 8 - 301 Aligned: 292 Modelled: 294 Confidence: 100.0% Identity: 34% PDB header:transferase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein belonging to the upf0052 (se_0549) from2 staphylococcus epidermidis atcc 12228 at 2.00 a resolution Phyre2 PDB 2q7x chain A Region: 9 - 299 Aligned: 275 Modelled: 290 Confidence: 100.0% Identity: 29% PDB header:transferase Chain: A: PDB Molecule:upf0052 protein sp_1565; PDBTitle: crystal structure of a putative phospho transferase (sp_1565) from2 streptococcus pneumoniae tigr4 at 2.00 a resolution Phyre2 PDB 2ffe chain A domain 1 Region: 13 - 301 Aligned: 274 Modelled: 289 Confidence: 100.0% Identity: 16% Fold: CofD-like Superfamily: CofD-like Family: CofD-like Phyre2 PDB 2p0y chain A Region: 9 - 302 Aligned: 219 Modelled: 254 Confidence: 100.0% Identity: 29% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein lp_0780; PDBTitle: crystal structure of q88yi3_lacpl from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr6 Phyre2 PDB 3dzc chain A Region: 9 - 59 Aligned: 51 Modelled: 51 Confidence: 88.7% Identity: 8% PDB header:isomerase Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase; PDBTitle: 2.35 angstrom resolution structure of wecb (vc0917), a udp-n-2 acetylglucosamine 2-epimerase from vibrio cholerae. Phyre2 PDB 1p3d chain A domain 1 Region: 5 - 38 Aligned: 34 Modelled: 32 Confidence: 86.8% Identity: 21% Fold: MurCD N-terminal domain Superfamily: MurCD N-terminal domain Family: MurCD N-terminal domain Phyre2 PDB 3klj chain A Region: 8 - 62 Aligned: 55 Modelled: 55 Confidence: 86.7% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:nad(fad)-dependent dehydrogenase, nirb-family (n-terminal PDBTitle: crystal structure of nadh:rubredoxin oxidoreductase from clostridium2 acetobutylicum Phyre2 PDB 3kpg chain A Region: 9 - 38 Aligned: 30 Modelled: 30 Confidence: 86.5% Identity: 33% PDB header:oxidoreductase Chain: A: PDB Molecule:sulfide-quinone reductase, putative; PDBTitle: crystal structure of sulfide:quinone oxidoreductase from2 acidithiobacillus ferrooxidans in complex with decylubiquinone Phyre2 PDB 2afb chain A domain 1 Region: 7 - 44 Aligned: 37 Modelled: 38 Confidence: 84.9% Identity: 24% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 1yqz chain A Region: 10 - 62 Aligned: 53 Modelled: 53 Confidence: 84.4% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:coenzyme a disulfide reductase; PDBTitle: structure of coenzyme a-disulfide reductase from2 staphylococcus aureus refined at 1.54 angstrom resolution Phyre2 PDB 2bln chain A domain 2 Region: 11 - 58 Aligned: 48 Modelled: 48 Confidence: 82.9% Identity: 23% Fold: Formyltransferase Superfamily: Formyltransferase Family: Formyltransferase Phyre2 PDB 1fcd chain A domain 1 Region: 9 - 39 Aligned: 31 Modelled: 31 Confidence: 82.2% Identity: 19% Fold: FAD/NAD(P)-binding domain Superfamily: FAD/NAD(P)-binding domain Family: FAD/NAD-linked reductases, N-terminal and central domains Phyre2 PDB 1yrw chain A Region: 11 - 58 Aligned: 48 Modelled: 48 Confidence: 82.0% Identity: 23% PDB header:transferase Chain: A: PDB Molecule:protein arna; PDBTitle: crystal structure of e.coli arna transformylase domain Phyre2 PDB 1kyq chain C Region: 8 - 45 Aligned: 38 Modelled: 38 Confidence: 81.5% Identity: 24% PDB header:oxidoreductase, lyase Chain: C: PDB Molecule:siroheme biosynthesis protein met8; PDBTitle: met8p: a bifunctional nad-dependent dehydrogenase and2 ferrochelatase involved in siroheme synthesis. Phyre2 PDB 1fcd chain B Region: 9 - 39 Aligned: 31 Modelled: 31 Confidence: 81.2% Identity: 19% PDB header:electron transport(flavocytochrome) Chain: B: PDB Molecule:flavocytochrome c sulfide dehydrogenase (flavin- PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution Phyre2 PDB 3dfz chain B Region: 8 - 44 Aligned: 37 Modelled: 37 Confidence: 81.1% Identity: 22% PDB header:oxidoreductase Chain: B: PDB Molecule:precorrin-2 dehydrogenase; PDBTitle: sirc, precorrin-2 dehydrogenase Phyre2 PDB 2e4g chain B Region: 8 - 38 Aligned: 31 Modelled: 31 Confidence: 80.9% Identity: 26% PDB header:biosynthetic protein, flavoprotein Chain: B: PDB Molecule:tryptophan halogenase; PDBTitle: rebh with bound l-trp Phyre2 PDB 1fmt chain A domain 2 Region: 7 - 54 Aligned: 48 Modelled: 48 Confidence: 80.9% Identity: 21% Fold: Formyltransferase Superfamily: Formyltransferase Family: Formyltransferase Phyre2 PDB 1f0k chain A Region: 10 - 58 Aligned: 46 Modelled: 49 Confidence: 80.7% Identity: 24% Fold: UDP-Glycosyltransferase/glycogen phosphorylase Superfamily: UDP-Glycosyltransferase/glycogen phosphorylase Family: Peptidoglycan biosynthesis glycosyltransferase MurG Phyre2 PDB 2vdc chain I Region: 1 - 38 Aligned: 38 Modelled: 38 Confidence: 75.4% Identity: 16% PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. Phyre2 1 d2hzba1 2 c2ppvA_ 3 c2q7xA_ 4 d2ffea1 5 c2p0yA_ 6 c3dzcA_ 7 d1p3da1 8 c3kljA_ 9 c3kpgA_ 10 d2afba1 11 c1yqzA_ 12 d2blna2 13 d1fcda1 14 c1yrwA_ 15 c1kyqC_ 16 c1fcdB_ 17 c3dfzB_ 18 c2e4gB_ 19 d1fmta2 20 d1f0ka_ 21 22 23 24 25 26 27 28 29 c2vdcI_ 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414